BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343234
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19640.2 | Symbols: ASHR2 | ASH1-related protein 2 | chr2:84... 1742 0.0
> AT2G19640.2 | Symbols: ASHR2 | ASH1-related protein 2 | chr2:8491388-8492920
FORWARD LENGTH=1533
Length=1533
Score = 1742 bits (943), Expect = 0.0
Identities = 1075/1138 (94%), Gaps = 12/1138 (1%)
Strand=Plus/Plus
Query 7 GACGGCGGAGCTAAACCGGAGACACTGCTTAGGGTTGCAGAAATCGGTGGAAGAGGAAGG 66
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 23 GACGGCGGAGCTAAACCGGAGACGCTGCTTAGGGTTGCAGAAATCGGTGGAAGAGGAAGG 82
Query 67 AGTTTGGTGGCGGCACAGTCTCTTCGTGCTGGACAAGTTATCCTAAGAGAGtctcctctc 126
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 83 AGTTTGGTGGCGGCACAGTCTCTTCGTGCTGGACAAGTTATCCTCAGAGAGTCTCCTCTC 142
Query 127 ctcctctactctgctttcccatttctctcctcctctgtttctcctTACTGCGACCATTGT 186
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 CTTCTCTACTCTGCTTTTCCATTTCTCTCCTCCTCTGTTTCTCCTTACTGCGACCATTGT 202
Query 187 TTCCGGTTATTAGCTTCATCGGCGCATCATAAATGCCAATCTTGCTCTCTCGTCTCCTTT 246
||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 203 TTCCGTTTGTTAGCTTCATCGGCGCATCAGAAATGTCAATCTTGCTCTCTCGTCTCCTTT 262
Query 247 TGTAGCCCTAGTTGCTTTGCCTCTCACACTCCTTGGCTCTGTGAATCTCTTCTCCGGCTT 306
|||||||||| |||||| |||||||| |||||||||||||| |||||||||| |||||||
Sbjct 263 TGTAGCCCTAATTGCTTCGCCTCTCATACTCCTTGGCTCTGCGAATCTCTTCGCCGGCTT 322
Query 307 CACC-A--ATCCTCCTCTGCATTCTCAGATCAACCTTCTGATCGCCAAGTCCAAGCTCGT 363
|||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 323 CACCAATCATCCTCCTCTGCATTCTCCGATCAACCTTCTGATCGTCAAGTCCAAGCTCGT 382
Query 364 TTCCTCCTCTCTGCTTACAACCTCGCCGCTGCTTCTCCTTCTGATTTCCAGATTTTGCTC 423
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 383 TTCCTCCTCTCTGCTTACAATCTCGCCGCTGCTTCTCCTTCTGATTTCCAGATTTTGCTC 442
Query 424 TCTCTCCAAGGTAGTGGCTGCAGCAATGGAGATTCTTCTTCTTCTGC----GA--CTG-A 476
|||||||||||||||||| |||||||||||||| |||||| |||||| || ||| |
Sbjct 443 TCTCTCCAAGGTAGTGGCAGCAGCAATGGAGATCCTTCTTGTTCTGCGGGTGATTCTGCA 502
Query 477 --TTCTGGGTTTCTGCATTCTCTTTTATCAGCCGTGTGTCCACCTCTTCCGGTGTGTATC 534
| |||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 503 GCTGCTGGGTTTCTTCATTCTCTTTTATCTTCCGTGTGTCCATCTCTTCCGGTGTCTATC 562
Query 535 TCGCCGGAGCTCACGGCAGCTTTACTGGCTAAGGATAAAGTTAACGCCTTTGGTCTGATG 594
|||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 563 TCGCCGGATCTCACGGCGGCTTTACTGTCAAAGGATAAAGTTAACGCCTTTGGTCTGATG 622
Query 595 GAACCGTTCTCTGTTTCGAATGATAAAAGATCAGTGCGAGCTTATGGGATTTATCCGAAG 654
||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 623 GAACCGTGCTCTGTTTCGAATGAGAAAAGATCTGTGCGAGCTTATGGGATTTATCCAAAG 682
Query 655 ACTTCGTTTTTCAATCATGATTGTCTTCCTAATGCTTGTAGATTCGATTATGTTGACTCT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 ACTTCGTTTTTCAATCATGATTGTCTTCCTAATGCTTGTAGATTCGATTATGTTGACTCT 742
Query 715 GCTTCTGATGGTAATACTGATATCATCATTAGGATGATTCATGATGTTCCTGAAGGTAGA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GCTTCTGATGGTAATACTGATATCATCATTAGGATGATTCATGATGTTCCTGAAGGTAGA 802
Query 775 GAAGTTTGTTTGAGCTACTTCCCTGTGAACATGAACTACTCGAGTAGACAAAAGAGATTG 834
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 803 GAAGTTTGTTTAAGCTACTTCCCTGTGAACATGAACTATTCGAGTAGACAAAAGAGATTG 862
Query 835 CTTGAGGATTACGGTTTTAAGTGTGACTGTGATCGGTGTAAAGTTGAATCTAGTTGGTCg 894
|||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct 863 CTTGAGGATTACGGTTTTAAGTGTGACTGTGATCGGTGCAAAGTGGAATTTAGTTGGTCT 922
Query 895 gaaggtgaggaagatgagaatgaggttatggaagagatggagaatgaagatgaagaagaa 954
|||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||
Sbjct 923 GAAGGTGAGGAAGATGAGAATGAGATTATGGAAGAGATGGAGGATCAAGATGAACAAGAA 982
Query 955 gagatggaggattcagaaggtgggaatgtagaagaagTTTGTGGAAATGGTGTGGATGAT 1014
|||||||| ||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 983 GAGATGGAAGATTCAGTAGGTGAGAATGAAGAAGAAGTTTGTGGAAATGGTGTGGATGAT 1042
Query 1015 GAATTTAATTTTCCTCATGCTTACTTTTTTGTGAGATATATGTGTGAGAAGGAGAGTTGT 1074
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1043 GAATCTAATTTTCCTCATGCTTACTTTTTTGTGAGATATATGTGTGAGAAGGAGAATTGT 1102
Query 1075 TTTGGCACTCTAGCTCCGCTTCCGCCGAAGACTCATGATGCTTCGAGGGTTCTTGAAT 1132
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1103 TTTGGCACTCTAGCTCCGCTTCCCCCGAAGACTCATGATGCTTCGAGAGTTCTTGAAT 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5