BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343239
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19590.1 | Symbols: ACO1, ATACO1 | ACC oxidase 1 | chr2:8475... 1480 0.0
> AT2G19590.1 | Symbols: ACO1, ATACO1 | ACC oxidase 1 | chr2:8475966-8477502
REVERSE LENGTH=1354
Length=1354
Score = 1480 bits (801), Expect = 0.0
Identities = 890/934 (95%), Gaps = 2/934 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTTGATCAAAGAAAGGGAGATGGAGATTCCTGTTATTGATTTTGGAGAATTGGAT 60
||||||||||||||||| || |||||||||||||| ||||||||||||| ||| ||||||
Sbjct 149 ATGGTTTTGATCAAAGAGAGAGAGATGGAGATTCCAGTTATTGATTTTGCAGAGTTGGAT 208
Query 61 GGAGAGAACAGAAGCAAGACCATGTCACTTCTTGATCATGCATGTGATAAGTGGGGCTTT 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 209 GGAGAGAAGAGAAGCAAGACCATGTCACTTCTTGATCATGCATGTGATAAGTGGGGATTC 268
Query 121 TTCATGGTTGATAATCATGGAATTGATAAAGAGTTGATGGAGAAAGTGAAGAAGATGATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TTCATGGTTGATAATCATGGAATTGATAAAGAGTTGATGGAGAAAGTGAAGAAGATGATT 328
Query 181 AACTCTTACTATGAGGAGCATTTGAAAGAGAAGTTTTACCAGTCAGAGATGGTCAAAGCT 240
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 329 AACTCTCACTATGAGGAGCATTTGAAAGAGAAGTTTTACCAGTCAGAGATGGTCAAGGCT 388
Query 241 TTGAGTGAAGGCAAAACCTCAGATGCAGATTGGGAAAGCAGTTTCTTCATCTCTCATAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 389 TTGAGTGAAGGCAAAACCTCAGATGCAGATTGGGAAAGCAGTTTCTTCATCTCACATAAA 448
Query 301 CCAACTTCAAATTTCTG-CGAGATCCTAAACATTTCAGTGGAACGGAGCAAGACGATGGA 359
|||||||||||| |||| | |||||| ||||||||||| ||||| ||||||||||||||
Sbjct 449 CCAACTTCAAATATCTGTC-AGATCCCAAACATTTCAGAGGAACTCAGCAAGACGATGGA 507
Query 360 TGAATATGTTTGTCAACTGCACAAGTTTGCAGAGAGGCTCTCGAAGCTCATGAGTGAGAA 419
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 508 TGAATATGTTTGTCAACTGCACAAGTTTGCAGAGAGACTCTCCAAGCTCATGTGTGAGAA 567
Query 420 TCTTGGTCTTGATCAAGAATACATAATGAATGCATTTTCTGGTTCAAAAGGTCCAGCTTT 479
||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||||
Sbjct 568 TCTTGGTCTTGATCAGGAAGACATAATGAATGCCTTTTCTGGTCCAAAAGGTCCAGCTTT 627
Query 480 CGGAACAAAAGTGGCTAAATACCCAGAATGTCCTCGTCCTGAGCTTATGAGAGGGCTGAG 539
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 628 TGGAACAAAAGTGGCTAAATACCCAGAATGCCCACGTCCTGAGCTTATGAGAGGGCTGAG 687
Query 540 AGAACATACGGATGCTGGTGGAATCATATTACTCCTGCAGGATGACCAAGTGCCTGGTCT 599
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 688 AGAACATACGGATGCTGGGGGAATCATATTACTCCTGCAGGATGATCAAGTGCCTGGTCT 747
Query 600 TGAGTTCTTTAAAGATGGGAAGTGGTTTCCTATACCACCATCCAAGAACAATACCATATT 659
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||
Sbjct 748 TGAGTTCTTTAAAGATGGGAAGTGGGTTCCTATACCGCCATCCAAGAACAATACCATTTT 807
Query 660 TGTCAATACCGGTGATCAGCTCGAGATACTGAGTAATGGGAGGTACAAGAGTGTTGTACA 719
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 808 TGTCAATACCGGTGATCAACTAGAGATACTGAGTAATGGGAGGTACAAGAGTGTTGTTCA 867
Query 720 TCGTGTAATGACATTGAAGCATGGAAGTAGACTTTCGATTGCTACGTTTTACAATCCGGC 779
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 868 CCGTGTAATGACAGTGAAGCATGGAAGTAGACTGTCGATTGCTACGTTTTACAATCCGGC 927
Query 780 TGGTGATGCCATAATATCTCCAGCTCCAAAGCTCTTGTATCCAAGTGGCTACCGGTTTCA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 928 TGGTGATGCCATAATATCTCCAGCTCCAAAGCTCTTGTATCCAAGTGGCTACCGTTTTCA 987
Query 840 AGACTACCTGAAGCTTTATTCAACTACCAAGTTTGGAGATAAAGGCCCCAGACTTGAGAG 899
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 988 AGACTACCTAAAGCTTTATTCAACTACCAAGTTTGGAGACAAAGGCCCCAGACTTGAGAC 1047
Query 900 CATGAAGAAAATGGGAAATGCGGATTCGGCCTAG 933
||||||||||||||||||||||||||| ||||||
Sbjct 1048 CATGAAGAAAATGGGAAATGCGGATTCAGCCTAG 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5