BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343256
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19400.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent a... 2649 0.0
> AT2G19400.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent
and protein kinase C) kinase family protein | chr2:8399157-8402601
REVERSE LENGTH=2070
Length=2070
Score = 2649 bits (1434), Expect = 0.0
Identities = 1534/1584 (97%), Gaps = 0/1584 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAATCAAGAAGACGAGGAGGTGGTGGTGGCGAAGGTGACGCCGGAGGCTGAGGAT 60
||||| |||||||| || || ||||||||| |||||||||||||| |||||| |||||||
Sbjct 121 ATGGAGAATCAAGAGGAAGATGAGGTGGTGCTGGCGAAGGTGACGTCGGAGGTTGAGGAT 180
Query 61 AGTTTTGAGGATGAAGGGTTGGTTTCAAATTCGACATTGGAGAAAGTTGCTGCAGCGAAG 120
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 AATTTTGAGGATGAAGGGTTGGTTTCAAATTCAACATTGGAGAAAGTTGCTGCAGCGAAG 240
Query 121 AAGTATATTGAAAACCATTACAATAGACGCATGAGACATATTCAACAACGTAAAGAAAGG 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AAGTATATTGAAAACCATTACAATAGACGCATGAGACACATTCAACAACGTAAAGAAAGG 300
Query 181 CGTTTGGTGCTAGAGCAAAAGATTGCATCTTTAGATGTATCAGAAAAAGAACAACTCGAG 240
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGTTGGGTGCTAGAACAAAAGATTGCATCTTTAGATGTATCAGAAAAAGAACAACTCGAG 360
Query 241 TTGCTGGAGGACTTGCAGAGGAAAGAGACAGAGTATACTAGATTAATGAGGAACAGGCTT 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGCTGGAGGATTTGCAGAGGAAAGAGACAGAGTATACTAGATTAATGAGGAACAGGCTT 420
Query 301 TGCGTTGATGATTTTGATCTTCTGAGTATTATCGGTAGAGGGGCTTTTGGTGAGGTAAGA 360
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 421 TGCGTTGACGATTTTGATCTTCTGAGTATTATCGGGAGAGGAGCTTTTGGTGAGGTAAGA 480
Query 361 CTCTGCCGTGAGAAAAAGACTGGCAACATTTATGCCATGAAGAAGCTAAAGAAGTCTGAA 420
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 481 CTCTGCCGTGAGAAAAAGACAGGCAACATTTATGCTATGAAGAAGCTTAAGAAGTCTGAA 540
Query 421 ATGCTTAGTAGGGGGCAAGTTGAACATGTTAGAGCTGAGAGGAACTTGCTAGCAGAAGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 ATGCTTAGTAGGGGGCAAGTTGAACATGTTAGAGCTGAGAGGAACTTGCTAGCCGAAGTT 600
Query 481 GCTAGTGACTGTATTGTGAAGCTTTATTATTCGTTCCAAGATCCAGAATATTTGTACCTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTAGTGACTGTATTGTGAAGCTTTATTATTCGTTCCAAGATCCAGAATATTTGTACCTT 660
Query 541 ATCATGGAGTATCTCTCTGGTGGTGATGTGATGACTTTGCTTATGAGGGAAGAGACTTTG 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCATGGAGTATCTGTCTGGTGGTGATGTGATGACTTTGCTTATGAGGGAAGAGACTTTG 720
Query 601 ACTGAAACCGTGGCTCGGTTTTACATTGCCCAAAGTGTTTTGGCTATTGAGTCGATACAT 660
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 ACGGAAACTGTGGCTCGGTTTTACATTGCCCAAAGTGTTTTGGCTATTGAGTCCATACAT 780
Query 661 GAGCATAATTATGTTCACAGGGATATTAAACCAGACAATCTTCTGTTGGACAAGAATGGT 720
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 781 AAGCATAATTATGTTCACAGGGATATAAAACCAGACAATCTTCTGTTGGACAAGTATGGT 840
Query 721 CATATGAAGCTGTCGGATTTTGGTCTTTGTAAGCCTCTCGATTGTAGAAATATTTCGGCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CATATGAAGCTGTCGGATTTTGGTCTTTGTAAGCCTCTCGATTGTAGAAATATTTCGGCT 900
Query 781 ATGAACGTAAATGAACCTTTGAATGATGAGAATATAAATGAATCAATCGATGGTGATGAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATGAACGTAAATGAACCTTTGAATGATGAGAATATAAATGAATCAATCGATGGTGATGAG 960
Query 841 AACTGCTCGATAGGACGTCGTGGAAGGCGTTGGAAGAGCCCATTGGAACAGCTGCAGCAT 900
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 961 AACTGCTCGATAGGACGTCGTGGAAGGCGTTGGAAGAGCCCACTGGAACAGCTGCAGCAT 1020
Query 901 TGGCAGATAAACCGAAGAAAACTGGCATATTCTACGGTAGGTACCCCCGATTATATTGCA 960
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 TGGCAGATAAACAGAAGAAAACTGGCATATTCTACGGTAGGTACCCCAGATTATATTGCA 1080
Query 961 CCTGAGGTGTTGCTGAAGAAGGGATACGGTGTAGAGTGTGACTGGTGGTCTTTGGGGGCC 1020
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CCAGAGGTGTTGCTGAAGAAGGGATACGGTGTAGAGTGTGACTGGTGGTCTTTGGGGGCC 1140
Query 1021 ATTATGTATGAGATGCTTGTCGGTTATCCACCATTTTACTCCGATGACCCCGTAACAACA 1080
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 1141 ATTATGTATGAGATGCTCGTTGGTTATCCACCATTTTACTCCGATGACCCTGTAACAACA 1200
Query 1081 TGTAGAAAGATTGTGAGCTGGAGAACTCATTTAGTATTCCCCGAGGACGCAAGGTTGACA 1140
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1201 TGTAGAAAGATTGTGAGCTGGAGAACTCATTTAGTATTCCCCGAGGGTGCAAGGTTGACA 1260
Query 1141 CCTGAGGCAAGAGATCTCATCTGTAGGTTGCTTTGTGATTCTGAGCATAGGCTTGGTTCT 1200
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1261 CCTGAGGCAAGAGATCTCATTTGTAGGTTGCTTTGTGATTCTGAGCACAGGCTTGGTTCT 1320
Query 1201 CATGGAGCCGGAGCCGAGCAAATCAAAGCTCATCCTTGGTTCAAAGATGTGGAATGGGAA 1260
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1321 CATGGAGCCGGAGCCGAGCAAATCAAAGCTCATACTTGGTTCAAAGATGTGGAATGGGAA 1380
Query 1261 AAACTCTATGAGATGGATGCAGCTTTTAAGCCAGTGGTCAATGGAGAACTTGATACCCAG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AAACTCTATGAGATGGATGCAGCTTTTAAGCCAGTGGTCAATGGAGAACTTGATACCCAG 1440
Query 1321 AATTTTATGAAATTCGATGAGGTGGAGTGTCCAAGACCAGCAAGAACAGGATCTGGACCG 1380
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1441 AATTTTATGAAATTCGATGAGGTGGAGTGTCCAAAACCAGCAAGAACAGGATCTGGACCG 1500
Query 1381 TCGTGGAAGGTGAGCATAACCCCTCAAAATATCAATTTTGTGGGCTATACATACAGAAAC 1440
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1501 TCATGGAAGGTGAGCATAACCCCTCAAAATATCAATTTTGTGGGCTATACGTACAGAAAC 1560
Query 1441 TTTGACGCGGTCCGTGGTTCTCGCCATTCTTTAGATATCAAAGGAGGCATTTCGCCACCA 1500
|||||||| || ||||||||||||||||||||||||||||||||| || |||| || |||
Sbjct 1561 TTTGACGCTGTTCGTGGTTCTCGCCATTCTTTAGATATCAAAGGAAGCGTTTCACCTCCA 1620
Query 1501 CGCTCATCAACTGACTCTACCCGAAGTGACTCTGCAATTGATTACACAAAACTCTCAACT 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 CGCTCATCAACTGACTCTACCCGAAGTGACTCTGCAATTGATTACACAAAACTCTCAACT 1680
Query 1561 GGTGGTGATGGTTCACAACAATAA 1584
||||| ||||| ||||||||||||
Sbjct 1681 GGTGGCGATGGCTCACAACAATAA 1704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5