BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343262
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19330.1 | Symbols: PIRL6 | plant intracellular ras group-re... 1742 0.0
AT2G19340.1 | Symbols: | Oligosaccharyltransferase complex/mag... 1092 0.0
AT4G29880.1 | Symbols: PIRL7 | plant intracellular ras group-re... 848 0.0
> AT2G19330.1 | Symbols: PIRL6 | plant intracellular ras group-related
LRR 6 | chr2:8372947-8374453 FORWARD LENGTH=1143
Length=1143
Score = 1742 bits (943), Expect = 0.0
Identities = 1088/1153 (94%), Gaps = 29/1153 (3%)
Strand=Plus/Plus
Query 1 ATGATATGCGAAGAGGCATATCATCAGCAACCGCAAATACAAAAGGAACAAATGATGACT 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATATGCGAGGAGGCATATCATCAGCAACCGCAAATACAAAAGGAACAAATGATGAC- 59
Query 61 ATGATGATGATGGATCAACGTAGTAATCATCAACGG-A-A-A--A--A--A---TCA-C- 106
|||||||||||||| ||||||||||||| | | | | | | ||| |
Sbjct 60 --------GATGGATCAACGTAATAATCATCAACGGAAGAGATCACCATTATCCTCACCA 111
Query 107 -CAT-T--ATCGTCGCCATCATCTCCATCATCACCAAAATCACCATCATTCAATAATAAT 162
||| | ||| || ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 112 TCATCTCCATCATCACCATCGTCTCCATCATCACCAAAGTCACCATCATTCAATAATAAT 171
Query 163 GAGGAAGAGAGGCTAGAGGTTGTGAATTTGAGTGGGATGGCATTGGAGTCTCTCCCTAAT 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GAGGAAGAGAGGCTAGAGGTTGTGAATTTGAGTGGGATGGCATTGGAGTCTCTCCCTAAT 231
Query 223 CCTTCACTCAATTTAGCTCAGATTTGCAAGCTTGATCTCTCCAACAATCATCTCCAGACT 282
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 232 CCTTCACTCAATTTAGCTCAGATTTGCAAGCTTGATCTCTCCAATAATCATCTTCAGACC 291
Query 283 ATACCAGAATCATTAACAGCGAGACTACTCAACTTGATAGCATTAGATGTTCACTCAAAT 342
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ATACCAGAATCACTAACAGCGAGACTACTCAACTTGATAGCATTAGATGTTCACTCAAAT 351
Query 343 CAGATCAAAGCTCTTCCAAACTCCATTGGTTGTCTCTCTAAGCTCAAGACTCTCAATGTC 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CAGATCAAAGCTCTTCCAAACTCCATTGGTTGTCTCTCTAAGCTCAAGACTCTCAATGTC 411
Query 403 TCCGGCAACTTTCTTGTATCCTTCCCCAAATCTATCCAACATTGCAGGTC-TCTGGAAGA 461
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 412 TCCGGCAACTTTCTTGTATCCTTTCCCAAATCTATCCAACATTGCAGGTCAT-TGGAAGA 470
Query 462 ACTAAATGCAAACTTCAACAAACTCATCAGATTACCAGACTCCATTGGATTTGAACTCAC 521
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 471 ACTAAATGCAAACTTCAACAAACTAATCAGATTACCAGACTCCATTGGTTTTGAACTCAC 530
Query 522 CAATCTAAGGAAGCTCTCTATCAACTCCAACAAGCTAATTAGTCTTCCACTCTCCATTAC 581
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 531 CAATCTAAGGAAGCTCTCTATCAACTCCAACAAGCTAATTAGTCTTCCAATCTCCATTAC 590
Query 582 TCACCTCACATCTCTCCGTGTCCTCGACGCTCGTCTCAACTGCCTCATGATTCTCCCAGA 641
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||
Sbjct 591 TCACCTCACATCTCTCCGTGTCCTTGACGCCCGTCTCAACTGCCTCATGATTCTACCGGA 650
Query 642 TGATCTCGAGAATCTCATCAACCTCGAGATTCTCAATGTCAGCCAGAATTTCCAGTATCT 701
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 651 TGATCTCGAGAATCTCATCAACCTCGAGATCCTCAATGTCAGCCAGAATTTCCAGTATCT 710
Query 702 TTCCGCTCTTCCATCTTCCATTGGCCTTTTAATGAACCTCATTGAGCTCGATGTTAGCTA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TTCCGCTCTTCCATCTTCCATTGGCCTTTTAATGAACCTCATTGAGCTCGATGTTAGCTA 770
Query 762 CAACAAGATCACTGTATTACCTGAGTCCATTGGCTGCATGAGAAGGTTAAGGAAGCTGAG 821
||||||||||||||| || || ||||||||||||||||||||| ||||||||||||||||
Sbjct 771 CAACAAGATCACTGTCTTGCCAGAGTCCATTGGCTGCATGAGACGGTTAAGGAAGCTGAG 830
Query 822 TGTTGAAGGAAACCCGCTCGTGTCCCCGCCCATCGAGGTGATGGAGCAGAATCTGCAGGT 881
|||||||||||||||||| ||||| || ||||| |||||||||||||||||| |||||||
Sbjct 831 TGTTGAAGGAAACCCGCTTGTGTCGCCACCCATAGAGGTGATGGAGCAGAATTTGCAGGT 890
Query 882 GGTGAGAGAGTATCTGACACAAAAGATGAATGGAGGCTCACCAAGGAGTCCAAGCAAAAA 941
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 891 GGTGAGAGAGTATCTGACACAGAAGATGAATGGTGGCTCACCAAGGAGTCCCAGCAAAAA 950
Query 942 GAAGTCTTGGGGATTCGGTAAATTGGTGAAGTATGGGACGTTCAATGGCGGATCAAGAAG 1001
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GAAGTCATGGGGATTCGGTAAATTGGTGAAGTATGGGACGTTCAATGGCGGATCAAGAAG 1010
Query 1002 CTGGAATAGAGAGGAGAGGGAAGGGTTTATCATGCCTGAGTACCGCGCCATCGACAGTCT 1061
|||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||
Sbjct 1011 CTGGAATAGAGAGGAGAGAGAAGGGTTCATCATGCCTGAGTACCGCTCCATCGACAGTCT 1070
Query 1062 TGCTTCGCCTAGGTATTCTGGAATGTTCTCTCCACGCCGTCTCTTTTCTCCAAGAACCTA 1121
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1071 TGCTTCGCCTAGGTATTCTGGAATGTTCTCTCCACGTCGTCTCTTTTCTCCAAGAACCTA 1130
Query 1122 TTTCAGCAGATAA 1134
|||||||||||||
Sbjct 1131 TTTCAGCAGATAA 1143
> AT2G19340.1 | Symbols: | Oligosaccharyltransferase complex/magnesium
transporter family protein | chr2:8373766-8375809 REVERSE
LENGTH=1164
Length=1164
Score = 1092 bits (591), Expect = 0.0
Identities = 646/673 (96%), Gaps = 2/673 (0%)
Strand=Plus/Minus
Query 447 CAGGTC-TCTGGAAGAACTAAATGCAAACTTCAACAAACTCATCAGATTACCAGACTCCA 505
|||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1164 CAGGTCAT-TGGAAGAACTAAATGCAAACTTCAACAAACTAATCAGATTACCAGACTCCA 1106
Query 506 TTGGATTTGAACTCACCAATCTAAGGAAGCTCTCTATCAACTCCAACAAGCTAATTAGTC 565
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 TTGGTTTTGAACTCACCAATCTAAGGAAGCTCTCTATCAACTCCAACAAGCTAATTAGTC 1046
Query 566 TTCCACTCTCCATTACTCACCTCACATCTCTCCGTGTCCTCGACGCTCGTCTCAACTGCC 625
||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1045 TTCCAATCTCCATTACTCACCTCACATCTCTCCGTGTCCTTGACGCCCGTCTCAACTGCC 986
Query 626 TCATGATTCTCCCAGATGATCTCGAGAATCTCATCAACCTCGAGATTCTCAATGTCAGCC 685
|||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 985 TCATGATTCTACCGGATGATCTCGAGAATCTCATCAACCTCGAGATCCTCAATGTCAGCC 926
Query 686 AGAATTTCCAGTATCTTTCCGCTCTTCCATCTTCCATTGGCCTTTTAATGAACCTCATTG 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 AGAATTTCCAGTATCTTTCCGCTCTTCCATCTTCCATTGGCCTTTTAATGAACCTCATTG 866
Query 746 AGCTCGATGTTAGCTACAACAAGATCACTGTATTACCTGAGTCCATTGGCTGCATGAGAA 805
||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 865 AGCTCGATGTTAGCTACAACAAGATCACTGTCTTGCCAGAGTCCATTGGCTGCATGAGAC 806
Query 806 GGTTAAGGAAGCTGAGTGTTGAAGGAAACCCGCTCGTGTCCCCGCCCATCGAGGTGATGG 865
|||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||
Sbjct 805 GGTTAAGGAAGCTGAGTGTTGAAGGAAACCCGCTTGTGTCGCCACCCATAGAGGTGATGG 746
Query 866 AGCAGAATCTGCAGGTGGTGAGAGAGTATCTGACACAAAAGATGAATGGAGGCTCACCAA 925
|||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 745 AGCAGAATTTGCAGGTGGTGAGAGAGTATCTGACACAGAAGATGAATGGTGGCTCACCAA 686
Query 926 GGAGTCCAAGCAAAAAGAAGTCTTGGGGATTCGGTAAATTGGTGAAGTATGGGACGTTCA 985
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 685 GGAGTCCCAGCAAAAAGAAGTCATGGGGATTCGGTAAATTGGTGAAGTATGGGACGTTCA 626
Query 986 ATGGCGGATCAAGAAGCTGGAATAGAGAGGAGAGGGAAGGGTTTATCATGCCTGAGTACC 1045
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 625 ATGGCGGATCAAGAAGCTGGAATAGAGAGGAGAGAGAAGGGTTCATCATGCCTGAGTACC 566
Query 1046 GCGCCATCGACAGTCTTGCTTCGCCTAGGTATTCTGGAATGTTCTCTCCACGCCGTCTCT 1105
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 565 GCTCCATCGACAGTCTTGCTTCGCCTAGGTATTCTGGAATGTTCTCTCCACGTCGTCTCT 506
Query 1106 TTTCTCCAAGAAC 1118
|||||||||||||
Sbjct 505 TTTCTCCAAGAAC 493
> AT4G29880.1 | Symbols: PIRL7 | plant intracellular ras group-related
LRR 7 | chr4:14607078-14608379 REVERSE LENGTH=1122
Length=1122
Score = 848 bits (459), Expect = 0.0
Identities = 933/1156 (81%), Gaps = 56/1156 (5%)
Strand=Plus/Plus
Query 1 ATGATATGCGAAGAGGCATATC---ATCAGCAACCGCAAATACAAAAGGAACAAATGATG 57
|||||||||||||| ||||||| |||||||| || ||||||||| || ||||||
Sbjct 1 ATGATATGCGAAGATGCATATCAGTATCAGCAATTACATGGACAAAAGGATCACATGATG 60
Query 58 ACTATGATGATGATGGATCAACGTAGTAATCATCAACGGA-AAAAATCACCATTATCGTC 116
|| |||||||||||||| | | ||| | |||| || | | ||||||| | | ||
Sbjct 61 ACAATGATGATGATGGA-C-TTG-AGT-A-CATC-AC-CACCATCATCACCACT-T--TC 110
Query 117 GCCATCATCTCCATCATCACCAAAATCACCATCATTCAATAATAATGAGGAAGAGAGGCT 176
||||| || | ||| ||||| |||||||||| |||||| || ||||||||||| ||
Sbjct 111 ACCATC--CT---T-ATCGCCAAAGTCACCATCATACAATAACAACGAGGAAGAGAGACT 164
Query 177 AGAGGTTGTGAATTTGAGTGGGATGGCATTGGAGTCTCTCCCTAATCCTTCACTCAATTT 236
||||||||||||||||||||| |||||||| | |||||||| |||||||| ||||||||
Sbjct 165 AGAGGTTGTGAATTTGAGTGGCATGGCATTACAATCTCTCCCAAATCCTTCCCTCAATTT 224
Query 237 AGCTCAGATTTGCAAGCTTGATCTCTCCAACAATCATCTCCAGACTATACCAGAATCAT- 295
|| | |||||||||||||||||||||||||||||| || ||| ||||||||||| |
Sbjct 225 GGCAAATATTTGCAAGCTTGATCTCTCCAACAATCATATCAAGAAAATACCAGAATC-TC 283
Query 296 TAACAGCGAGACTACTCAACTTGATAGCATTAGATGTTCACTCAAATCAGATCAAAGCTC 355
||||||| ||| ||||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 284 TAACAGCAAGATTACTCAACTTGATAGCATTGGATATTCACTCAAACCAGATCAAAGCTC 343
Query 356 TTCCAAACTCCATTGGTTGTCTCTCTAAGCTCAAGACTC-TCAATGTCTCCGGCAACTTT 414
|||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||||
Sbjct 344 TTCCAAACTCCATTGGTTGTCTTTCTAAGCTCAAGA-TCCTTAATGTCTCCGGCAACTTT 402
Query 415 CTTGTATCCTTCCCC-AAATCTATCCAACATTGCAGGTCTCTGGAAGAACTAAATGCAAA 473
|| || ||| ||||| ||| |||| ||| |||||||||| || ||||||||||| || ||
Sbjct 403 CTCGTTTCCCTCCCCCAAA-CTATTCAAAATTGCAGGTCACTCGAAGAACTAAACGCCAA 461
Query 474 CTTCAACAAACTCATCAGATTACCAGACTCCATTGGATTTGAACTCACCAATCT-AAGGA 532
||||||| | || || |||||||||||| ||| || || ||||| |||||||| || |
Sbjct 462 CTTCAACGAGCTGATTAGATTACCAGACAACATAGGCTTAGAACTAACCAATCTGAAA-A 520
Query 533 AGCTCTCTATCAACTCCAACAAGCTAATTAGTCTTCCA-CTCTCCATTAC-TCACCTCAC 590
|||||| | ||||||| |||||||| ||||| || ||| | | |||| || | ||||||
Sbjct 521 AGCTCTGTGTCAACTCAAACAAGCTCATTAGCCTACCAGC-CACCATCACCTG-CCTCAC 578
Query 591 ATCTCTCCGTGTCCTCGACGCTCGTCTCAACTGCCTCATGATTCTCCCAGATGATCTCGA 650
|| || ||||||||||| ||||||||||| ||||| ||||| ||||| || || |||||
Sbjct 579 TTCCCTGCGTGTCCTCGATGCTCGTCTCAATTGCCTTATGATCCTCCCTGAGGACCTCGA 638
Query 651 GAATCTCATCAACCTCGAGATTCTCAATGTCAGCCAGAATTTCCAGTATCTTTCCGCTCT 710
||| |||||||||||||| || ||||||||||| ||||| |||||||||||||| |||||
Sbjct 639 GAACCTCATCAACCTCGAAATCCTCAATGTCAGTCAGAACTTCCAGTATCTTTCTGCTCT 698
Query 711 TCCATCTTCCATTGGCCTTTTAATGAACCTCATTGAGCTCGATGTTAGCTACAACAAGAT 770
||||||||| || || ||| | |||||||| | || || ||| ||||||||||||||||
Sbjct 699 TCCATCTTCTATCGGTCTTCTCCTGAACCTCCTCGAACTGGATATTAGCTACAACAAGAT 758
Query 771 CACTGTATTACCTGAGTCCATTGGCTGCATGAGAAGGTTAAGGAAGCTGAGTGTTGAAGG 830
|| || || |||||||| ||||| |||||||| | || | || ||||| | |||||
Sbjct 759 AACAGTGTTGCCTGAGTCTATTGGATGCATGAGGCGCCTACGAAAACTGAGCGCGGAAGG 818
Query 831 AAACCCGCTCGTGTCCCCGCCCATCGAGGT-GATGGAGCAGAATCT-GCAGGTGGTGAGA 888
|||||| ||||| ||||| ||||| ||||| | |||| |||| || ||| | |||| ||
Sbjct 819 AAACCCACTCGTCTCCCCACCCATTGAGGTTG-TGGAACAGAG-CTTGCATGCGGTGCGA 876
Query 889 GAGTATCTGA-CACAAAAGATGAATGG-AGGCTCACCAAGGAGTC-CAAGCAAA-AAGAA 944
|||||||||| | |||||||||||||| | || || | | || ||||| |||||
Sbjct 877 GAGTATCTGAGC-CAAAAGATGAATGGTAAACTGGTGAAC-AC-CGCA-GCAAAGAAGAA 932
Query 945 GTCTTGGGGATTCGGTAAATTGGTGAAGTATGGGACGTTCAATGGCGGATCAAGAAGCT- 1003
| | ||||| ||| ||||| | || ||||| ||||| ||||||||| ||||||| | |
Sbjct 933 GACATGGGGTTTCCGTAAACTAGTCAAGTACGGGACATTCAATGGCAGATCAAGG-GTTT 991
Query 1004 GGAATAGAGAGGAGAGGGAAGGGTTTATCATGCCTGAGTACCG-CGCCATCGACAGTCTT 1062
||| || || ||| | |||||| | ||||||||||||||||| | |||| || | || |
Sbjct 992 GGACCAGGGAAGAGCGAGAAGGGCTCATCATGCCTGAGTACCGTC-CCATTGATA-TCCT 1049
Query 1063 G-CTTCG-CCTAGGTATTC-TG-GAATGTTCTCTCCACGCCGTCTCTTTTCTCCAAGAAC 1118
|||| || || | ||| || || || ||| || || |||||||| || ||||||||
Sbjct 1050 AACTTCCACCAAG-T-TTCCTGTGAC-GTGCTCACCTCGACGTCTCTTCTCCCCAAGAAC 1106
Query 1119 CTATTTCAGCAGATAA 1134
||||||||||||||||
Sbjct 1107 CTATTTCAGCAGATAA 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5