BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343263
Length=2268
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19280.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3157 0.0
> AT2G19280.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:8362435-8366144 FORWARD LENGTH=3454
Length=3454
Score = 3157 bits (1709), Expect = 0.0
Identities = 2043/2198 (93%), Gaps = 47/2198 (2%)
Strand=Plus/Plus
Query 97 TCGtctctacctctctctctatctctctct-t-ctcGCCGTCGCCGTTATTATTCCGGGC 154
||||||||||| |||||| |||||||||| | |||||||||||||||||||||||||||
Sbjct 12 TCGTCTCTACCAATCTCTCCATCTCTCTCTCTGCTCGCCGTCGCCGTTATTATTCCGGGC 71
Query 155 GATCAAAATTAAGACAAGCCA--TTATAACTTGTGACCAGTCCCTGTTTATGTGGGTTTC 212
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 72 GATCAAAATTAAGACAAGCCATTTTATAACTTGTGACCAGTCCCTGTTTATGTGGGTTTC 131
Query 213 AATCCTAAACCTCAAGTCTTCTGGTTTGAATCATTGCTT-TACAAGAACCAAGGCTTTTC 271
|||| | ||||||||||||||||| |||||||||| || ||||||||||||||||||||
Sbjct 132 AATCTTTAACCTCAAGTCTTCTGGATTGAATCATT-TTTGTACAAGAACCAAGGCTTTTC 190
Query 272 GATATTTCTGGT-CAAGA-----AC-AAAG----GCT-T-T-ACAAGAAC-AAAGATTTC 316
|||||||||||| | || | | | | | | | || ||| |||||| |
Sbjct 191 GATATTTCTGGTGTAGGACCTTTTCTCTTGCTTCGTTGTCTGAGAATAACTCAAGATTCC 250
Query 317 AGAGTGATTCTGGTAAGCTAACTTACTCTGGATCACGGTACTATGTTTCCGATGCAAGGA 376
||| ||||||| ||| |||| |||||||||||||||||||||| | | || |
Sbjct 251 AGACTGATTCTAGTAGGCTACCTTACTCTGGATCACGGTACTA----T-C-AT------A 298
Query 377 TTGGTTCAAGTAAGCATTTTGGTGAAAG-TTTTGATACGATTCTGAAGAATATTGATGTC 435
||||||||||||||||||||| ||| ||||| | |||||||||||||||||||||||
Sbjct 299 ---GTTCAAGTAAGCATTTTGGTG-AAGATTTTGTTTCGATTCTGAAGAATATTGATGTC 354
Query 436 CCTAGTGACTGTGTTGAAACTATTAGAAATGTGCTTACGAAACACAGTTGGATACAGAAA 495
|| || || |||||||| |||||||||||||||||| |||||||| |||||||||||||
Sbjct 355 CCAAGGGATTGTGTTGAGACTATTAGAAATGTGCTTGTGAAACACAATTGGATACAGAAA 414
Query 496 TATGAGAGTGGGTTTAGTACTGAACTTGATCAATACAATGTCATTAGAATTTTGGATGAT 555
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 415 TATGAGAGTGGGTTTAGTACTGAGCTTGATCAATACACTGTCATTAGAATTTTGGATGAT 474
Query 556 TTGTTTGAGGAGACTTTGGATGCATCTATTGCTCTATACTTCTTTAGATGGTCAGAGTTG 615
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 475 TTGTTTGAGGAGACTTTGGATGCATCTATTGTTCTATACTTCTTTAGGTGGTCAGAGTTG 534
Query 616 TGGATTGGTGTTGCGCACTCGAGCAGGTCTATCAGCCGAATGATTCATATTCTGGTGTCT 675
||||||||||||| |||||||||||||||||||||| | |||||||||||| |||| |||
Sbjct 535 TGGATTGGTGTTGAGCACTCGAGCAGGTCTATCAGCAGGATGATTCATATTTTGGTATCT 594
Query 676 GGAAATATGAATTATAGAGCTGTAGATATGCTTCTCTGTCTGGTGAAGAAATGTAGTGGA 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GGAAATATGAATTATAGAGCTGTAGATATGCTTCTCTGTCTGGTGAAGAAATGTAGTGGA 654
Query 736 AAAGAAAGGTCCTTGTGTTTAGTTATAAAGGATCTATTTGAAACTCGTATTGATCGTCGG 795
|||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||
Sbjct 655 GAAGAAAGGTCTTTGTGTTTAGTTATGAAGGATCTTTTTGAAACTCGTATTGATCGTAGG 714
Query 796 GTTTTAGAAACTGTGTTTTGTATGCTGATTGATTGTTGCATTAAAGAGAGGAAGGTAGAC 855
|||||||| ||||||||| | || ||||||||||||||||||| |||||| |||||| ||
Sbjct 715 GTTTTAGAGACTGTGTTTAGCATACTGATTGATTGTTGCATTAGAGAGAGAAAGGTAAAC 774
Query 856 ATGGCCCTGAAACTAACCTACAAAATAGACCAGTTTGGCATCTTTCCTTCACGAGGGGTT 915
||||||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 775 ATGGCCCTGAAGCTAACTTACAAAGTGGACCAGTTTGGCATCTTTCCTTCACGAGGGGTT 834
Query 916 TGTATTTCGTTAG-TTGAGGAAATTCTACGAGCTCATGGGTTGGAGTTAGCTCGGGAATT 974
||||||||||| | || ||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 835 TGTATTTCGTT-GCTTAAGGAAATTCTACGAGTTCATGGCTTGGAGTTAGCTCGGGAATT 893
Query 975 TGTTGAGCACATGCTTAGTCGAGGGAGGCATCTAAATGCTGCCGTTCTTAGCCTATTCAT 1034
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 894 TGTTGAGCACATGCTTAGTCGAGGGAGGCATCTAAATGCTGCTGTCCTTAGCCTATTCAT 953
Query 1035 AAGGAAGTATTGCTCTGATGGCTACTTTGATAAAGGTTGGGAATTGCTTATGGGAATGAA 1094
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 954 AAGGAAGTATTGCTCGGATGGCTATTTTGATAAAGGTTGGGAATTGCTTATGGGAATGAA 1013
Query 1095 AGACTATGGCATCAGACCTGACATTGTGGCATTTACAGTTTTCATTGATAAATTGTGTAA 1154
| |||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1014 ACACTACGGCATCAGACCTGATATTGTGGCATTTACAGTTTTTATTGATAAATTGTGTAA 1073
Query 1155 GGCAGGGTTTCTAAAAGAAGCGACTTCGGTATTGTTTAAACTCAAACTCTTTGGTATCTC 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GGCAGGGTTTCTAAAAGAAGCGACTTCGGTATTGTTTAAACTCAAACTCTTTGGTATCTC 1133
Query 1215 TCAGGATTCTGTATCCGTCAGCTCTGTTATCGACGGGTTCTGTAAGGTAGGGAAACCAGA 1274
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1134 TCAGGATTCTGTATCCGTCAGTTCTGTTATCGACGGGTTCTGTAAGGTGGGGAAACCAGA 1193
Query 1275 GGAAGCCATTAAGCTCATTCATTCTTTTCGCCTTAGACCAAACATTTTTGTGTACAGTAG 1334
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1194 GGAAGCCATTAAGCTCATTCATTCTTTTCGTCTTAGACCAAACATTTTTGTGTACAGTAG 1253
Query 1335 CTTTCTGTCAAATATATGTAGCACAGGAGACATGCTCAGAGCCTCTACCATATTTCAGGA 1394
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1254 CTTTCTGTCAAATATATGTTCCACAGGAGACATGCTCAGAGCTTCTACCATATTTCAGGA 1313
Query 1395 GATTTTTGAGTTGGGACTCCTTCCTGATTGT-TATTGTTATACTACTATGATTGATGGGT 1453
|||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1314 GATTTTCGAGTTGGGACTCCTTCCTGATTGTGT-TTGTTATACTACTATGATTGATGGGT 1372
Query 1454 ATTGTACTCTAGGCAGAACAGATAAAGCTTTTCAATTTTTCGGGGCGCTGTTGAAAAGCG 1513
|||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1373 ATTGTAATCTAGGCAGAACTGATAAAGCTTTTCAATACTTCGGGGCGCTGTTGAAAAGCG 1432
Query 1514 GGAACCCGCCATCCTTAATAACATATACACTACTTATTGGTGCTTGCAGCAAGTTTGGAA 1573
|||||||||||||||| | ||||| |||| |||||||||| |||||||||| ||||||||
Sbjct 1433 GGAACCCGCCATCCTTGACAACATCTACAATACTTATTGGAGCTTGCAGCAGGTTTGGAA 1492
Query 1574 GCATAAGTGATGCAGAATCTGTGTTTCGGATTATGAAAACTGAAGGTTTGCATCC-GGAT 1632
|||||||||||||||||||||||||||||| |||||||||||||||| | || | ||||
Sbjct 1493 GCATAAGTGATGCAGAATCTGTGTTTCGGAATATGAAAACTGAAGGTCT-CAAACTGGAT 1551
Query 1633 GTTGTAACGTATAACAATCTGATGTATGGGTATGGGAAGACACATCAGCTGAATAAAGTA 1692
|| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1552 GTCGTAACATATAACAATCTGATGCATGGGTATGGGAAGACACATCAGCTGAATAAAGTT 1611
Query 1693 TTTGAGCTTATTGATGAGATGAGATCTGCTGGTATCTCTCCAGATGTTGCAACCTACAAT 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TTTGAGCTTATTGATGAGATGAGATCTGCTGGTATCTCTCCAGATGTTGCAACCTACAAT 1671
Query 1753 ATTTTGATACATAGCATGGTGGTTAGAGGATATGTCGATGAAGCAAATGAAATTATCAGT 1812
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1672 ATTTTGATACATAGCATGGTTGTTAGAGGATATATCGATGAAGCAAATGAAATTATCAGT 1731
Query 1813 GAGCTTATCCGACGAGGCTTTGTTCCTAGTGCATTAGCATTCACAGATGTGATTGGTGGG 1872
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1732 GAGCTTATCCGACGAGGCTTTGTTCCTAGTACATTAGCATTCACAGATGTGATTGGTGGG 1791
Query 1873 TTCTCGAAGAGAGGGGATTTTCAGGAAGCGTTTATTTTGTGGTTCTACATGGCTGATCTT 1932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 TTCTCGAAGAGAGGGGATTTTCAGGAAGCGTTTATTTTGTGGTTCTACATGGCTGATCTT 1851
Query 1933 AGAGTGAAACCTGATGTTGTAACATGCAGTGCATTACTTCATGGTTATTGCAGAGCGCAG 1992
||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1852 AGAATGAAACCTGATGTTGTAACATGCAGTGCATTACTTCATGGCTATTGCAAAGCGCAG 1911
Query 1993 AGAATGGAGAAAGCTATTGTTTTGTTTAATAAGTTGCTTGATGCGGGGTTAAAGCCAGAT 2052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 AGAATGGAGAAAGCTATTGTTTTGTTTAATAAGTTGCTTGATGCGGGGTTAAAGCCAGAT 1971
Query 2053 GTGGTTTTGTATAATACGCTCATCCATGGATATTGCAGTGTAGGAGATATTGAGAAAGCA 2112
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 GTTGTTTTGTATAATACGCTCATCCATGGATATTGCAGTGTAGGAGATATTGAGAAAGCA 2031
Query 2113 TGTGAGTTGATTGGTTTGATGGTTCGAAGGGGAATGCTTCCAAATGAGAGTACCCATCAC 2172
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2032 TGTGAGTTGATTGGTTTGATGGTTCAAAGGGGAATGCTTCCAAATGAGAGTACCCATCAC 2091
Query 2173 GCACTTGTTGTGGGGCTTGAGGGAAAGCGGTTCATGAACTCGGAAGA-GCATGCATCCAT 2231
||||||||| ||||||||||||||||| |||| ||||||| ||| | ||||||||||||
Sbjct 2092 GCACTTGTTTTGGGGCTTGAGGGAAAGAGGTTTGTGAACTCAGAA-ACGCATGCATCCAT 2150
Query 2232 GCTACTTGAAGAAATTGTAGTTGCAAA-TGGCGCCTGA 2268
|||||||||||||||| | |||||||| |||| |||||
Sbjct 2151 GCTACTTGAAGAAATTATTGTTGCAAAATGGCACCTGA 2188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112549621890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5