BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg343263 Length=2268 Score E Sequences producing significant alignments: (Bits) Value AT2G19280.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3157 0.0 > AT2G19280.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:8362435-8366144 FORWARD LENGTH=3454 Length=3454 Score = 3157 bits (1709), Expect = 0.0 Identities = 2043/2198 (93%), Gaps = 47/2198 (2%) Strand=Plus/Plus Query 97 TCGtctctacctctctctctatctctctct-t-ctcGCCGTCGCCGTTATTATTCCGGGC 154 ||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||||| Sbjct 12 TCGTCTCTACCAATCTCTCCATCTCTCTCTCTGCTCGCCGTCGCCGTTATTATTCCGGGC 71 Query 155 GATCAAAATTAAGACAAGCCA--TTATAACTTGTGACCAGTCCCTGTTTATGTGGGTTTC 212 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 72 GATCAAAATTAAGACAAGCCATTTTATAACTTGTGACCAGTCCCTGTTTATGTGGGTTTC 131 Query 213 AATCCTAAACCTCAAGTCTTCTGGTTTGAATCATTGCTT-TACAAGAACCAAGGCTTTTC 271 |||| | ||||||||||||||||| |||||||||| || |||||||||||||||||||| Sbjct 132 AATCTTTAACCTCAAGTCTTCTGGATTGAATCATT-TTTGTACAAGAACCAAGGCTTTTC 190 Query 272 GATATTTCTGGT-CAAGA-----AC-AAAG----GCT-T-T-ACAAGAAC-AAAGATTTC 316 |||||||||||| | || | | | | | | | || ||| |||||| | Sbjct 191 GATATTTCTGGTGTAGGACCTTTTCTCTTGCTTCGTTGTCTGAGAATAACTCAAGATTCC 250 Query 317 AGAGTGATTCTGGTAAGCTAACTTACTCTGGATCACGGTACTATGTTTCCGATGCAAGGA 376 ||| ||||||| ||| |||| |||||||||||||||||||||| | | || | Sbjct 251 AGACTGATTCTAGTAGGCTACCTTACTCTGGATCACGGTACTA----T-C-AT------A 298 Query 377 TTGGTTCAAGTAAGCATTTTGGTGAAAG-TTTTGATACGATTCTGAAGAATATTGATGTC 435 ||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||| Sbjct 299 ---GTTCAAGTAAGCATTTTGGTG-AAGATTTTGTTTCGATTCTGAAGAATATTGATGTC 354 Query 436 CCTAGTGACTGTGTTGAAACTATTAGAAATGTGCTTACGAAACACAGTTGGATACAGAAA 495 || || || |||||||| |||||||||||||||||| |||||||| ||||||||||||| Sbjct 355 CCAAGGGATTGTGTTGAGACTATTAGAAATGTGCTTGTGAAACACAATTGGATACAGAAA 414 Query 496 TATGAGAGTGGGTTTAGTACTGAACTTGATCAATACAATGTCATTAGAATTTTGGATGAT 555 ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 415 TATGAGAGTGGGTTTAGTACTGAGCTTGATCAATACACTGTCATTAGAATTTTGGATGAT 474 Query 556 TTGTTTGAGGAGACTTTGGATGCATCTATTGCTCTATACTTCTTTAGATGGTCAGAGTTG 615 ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 475 TTGTTTGAGGAGACTTTGGATGCATCTATTGTTCTATACTTCTTTAGGTGGTCAGAGTTG 534 Query 616 TGGATTGGTGTTGCGCACTCGAGCAGGTCTATCAGCCGAATGATTCATATTCTGGTGTCT 675 ||||||||||||| |||||||||||||||||||||| | |||||||||||| |||| ||| Sbjct 535 TGGATTGGTGTTGAGCACTCGAGCAGGTCTATCAGCAGGATGATTCATATTTTGGTATCT 594 Query 676 GGAAATATGAATTATAGAGCTGTAGATATGCTTCTCTGTCTGGTGAAGAAATGTAGTGGA 735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 GGAAATATGAATTATAGAGCTGTAGATATGCTTCTCTGTCTGGTGAAGAAATGTAGTGGA 654 Query 736 AAAGAAAGGTCCTTGTGTTTAGTTATAAAGGATCTATTTGAAACTCGTATTGATCGTCGG 795 |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| || Sbjct 655 GAAGAAAGGTCTTTGTGTTTAGTTATGAAGGATCTTTTTGAAACTCGTATTGATCGTAGG 714 Query 796 GTTTTAGAAACTGTGTTTTGTATGCTGATTGATTGTTGCATTAAAGAGAGGAAGGTAGAC 855 |||||||| ||||||||| | || ||||||||||||||||||| |||||| |||||| || Sbjct 715 GTTTTAGAGACTGTGTTTAGCATACTGATTGATTGTTGCATTAGAGAGAGAAAGGTAAAC 774 Query 856 ATGGCCCTGAAACTAACCTACAAAATAGACCAGTTTGGCATCTTTCCTTCACGAGGGGTT 915 ||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||| Sbjct 775 ATGGCCCTGAAGCTAACTTACAAAGTGGACCAGTTTGGCATCTTTCCTTCACGAGGGGTT 834 Query 916 TGTATTTCGTTAG-TTGAGGAAATTCTACGAGCTCATGGGTTGGAGTTAGCTCGGGAATT 974 ||||||||||| | || ||||||||||||||| |||||| |||||||||||||||||||| Sbjct 835 TGTATTTCGTT-GCTTAAGGAAATTCTACGAGTTCATGGCTTGGAGTTAGCTCGGGAATT 893 Query 975 TGTTGAGCACATGCTTAGTCGAGGGAGGCATCTAAATGCTGCCGTTCTTAGCCTATTCAT 1034 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 894 TGTTGAGCACATGCTTAGTCGAGGGAGGCATCTAAATGCTGCTGTCCTTAGCCTATTCAT 953 Query 1035 AAGGAAGTATTGCTCTGATGGCTACTTTGATAAAGGTTGGGAATTGCTTATGGGAATGAA 1094 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 954 AAGGAAGTATTGCTCGGATGGCTATTTTGATAAAGGTTGGGAATTGCTTATGGGAATGAA 1013 Query 1095 AGACTATGGCATCAGACCTGACATTGTGGCATTTACAGTTTTCATTGATAAATTGTGTAA 1154 | |||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1014 ACACTACGGCATCAGACCTGATATTGTGGCATTTACAGTTTTTATTGATAAATTGTGTAA 1073 Query 1155 GGCAGGGTTTCTAAAAGAAGCGACTTCGGTATTGTTTAAACTCAAACTCTTTGGTATCTC 1214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 GGCAGGGTTTCTAAAAGAAGCGACTTCGGTATTGTTTAAACTCAAACTCTTTGGTATCTC 1133 Query 1215 TCAGGATTCTGTATCCGTCAGCTCTGTTATCGACGGGTTCTGTAAGGTAGGGAAACCAGA 1274 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1134 TCAGGATTCTGTATCCGTCAGTTCTGTTATCGACGGGTTCTGTAAGGTGGGGAAACCAGA 1193 Query 1275 GGAAGCCATTAAGCTCATTCATTCTTTTCGCCTTAGACCAAACATTTTTGTGTACAGTAG 1334 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1194 GGAAGCCATTAAGCTCATTCATTCTTTTCGTCTTAGACCAAACATTTTTGTGTACAGTAG 1253 Query 1335 CTTTCTGTCAAATATATGTAGCACAGGAGACATGCTCAGAGCCTCTACCATATTTCAGGA 1394 ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 1254 CTTTCTGTCAAATATATGTTCCACAGGAGACATGCTCAGAGCTTCTACCATATTTCAGGA 1313 Query 1395 GATTTTTGAGTTGGGACTCCTTCCTGATTGT-TATTGTTATACTACTATGATTGATGGGT 1453 |||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 1314 GATTTTCGAGTTGGGACTCCTTCCTGATTGTGT-TTGTTATACTACTATGATTGATGGGT 1372 Query 1454 ATTGTACTCTAGGCAGAACAGATAAAGCTTTTCAATTTTTCGGGGCGCTGTTGAAAAGCG 1513 |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 1373 ATTGTAATCTAGGCAGAACTGATAAAGCTTTTCAATACTTCGGGGCGCTGTTGAAAAGCG 1432 Query 1514 GGAACCCGCCATCCTTAATAACATATACACTACTTATTGGTGCTTGCAGCAAGTTTGGAA 1573 |||||||||||||||| | ||||| |||| |||||||||| |||||||||| |||||||| Sbjct 1433 GGAACCCGCCATCCTTGACAACATCTACAATACTTATTGGAGCTTGCAGCAGGTTTGGAA 1492 Query 1574 GCATAAGTGATGCAGAATCTGTGTTTCGGATTATGAAAACTGAAGGTTTGCATCC-GGAT 1632 |||||||||||||||||||||||||||||| |||||||||||||||| | || | |||| Sbjct 1493 GCATAAGTGATGCAGAATCTGTGTTTCGGAATATGAAAACTGAAGGTCT-CAAACTGGAT 1551 Query 1633 GTTGTAACGTATAACAATCTGATGTATGGGTATGGGAAGACACATCAGCTGAATAAAGTA 1692 || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1552 GTCGTAACATATAACAATCTGATGCATGGGTATGGGAAGACACATCAGCTGAATAAAGTT 1611 Query 1693 TTTGAGCTTATTGATGAGATGAGATCTGCTGGTATCTCTCCAGATGTTGCAACCTACAAT 1752 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1612 TTTGAGCTTATTGATGAGATGAGATCTGCTGGTATCTCTCCAGATGTTGCAACCTACAAT 1671 Query 1753 ATTTTGATACATAGCATGGTGGTTAGAGGATATGTCGATGAAGCAAATGAAATTATCAGT 1812 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 1672 ATTTTGATACATAGCATGGTTGTTAGAGGATATATCGATGAAGCAAATGAAATTATCAGT 1731 Query 1813 GAGCTTATCCGACGAGGCTTTGTTCCTAGTGCATTAGCATTCACAGATGTGATTGGTGGG 1872 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1732 GAGCTTATCCGACGAGGCTTTGTTCCTAGTACATTAGCATTCACAGATGTGATTGGTGGG 1791 Query 1873 TTCTCGAAGAGAGGGGATTTTCAGGAAGCGTTTATTTTGTGGTTCTACATGGCTGATCTT 1932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1792 TTCTCGAAGAGAGGGGATTTTCAGGAAGCGTTTATTTTGTGGTTCTACATGGCTGATCTT 1851 Query 1933 AGAGTGAAACCTGATGTTGTAACATGCAGTGCATTACTTCATGGTTATTGCAGAGCGCAG 1992 ||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 1852 AGAATGAAACCTGATGTTGTAACATGCAGTGCATTACTTCATGGCTATTGCAAAGCGCAG 1911 Query 1993 AGAATGGAGAAAGCTATTGTTTTGTTTAATAAGTTGCTTGATGCGGGGTTAAAGCCAGAT 2052 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1912 AGAATGGAGAAAGCTATTGTTTTGTTTAATAAGTTGCTTGATGCGGGGTTAAAGCCAGAT 1971 Query 2053 GTGGTTTTGTATAATACGCTCATCCATGGATATTGCAGTGTAGGAGATATTGAGAAAGCA 2112 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1972 GTTGTTTTGTATAATACGCTCATCCATGGATATTGCAGTGTAGGAGATATTGAGAAAGCA 2031 Query 2113 TGTGAGTTGATTGGTTTGATGGTTCGAAGGGGAATGCTTCCAAATGAGAGTACCCATCAC 2172 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2032 TGTGAGTTGATTGGTTTGATGGTTCAAAGGGGAATGCTTCCAAATGAGAGTACCCATCAC 2091 Query 2173 GCACTTGTTGTGGGGCTTGAGGGAAAGCGGTTCATGAACTCGGAAGA-GCATGCATCCAT 2231 ||||||||| ||||||||||||||||| |||| ||||||| ||| | |||||||||||| Sbjct 2092 GCACTTGTTTTGGGGCTTGAGGGAAAGAGGTTTGTGAACTCAGAA-ACGCATGCATCCAT 2150 Query 2232 GCTACTTGAAGAAATTGTAGTTGCAAA-TGGCGCCTGA 2268 |||||||||||||||| | |||||||| |||| ||||| Sbjct 2151 GCTACTTGAAGAAATTATTGTTGCAAAATGGCACCTGA 2188 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 112549621890 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5