BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg343268

Length=933
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19210.1 | Symbols:  | Leucine-rich repeat transmembrane pro...   346    2e-94


> AT2G19210.1 | Symbols:  | Leucine-rich repeat transmembrane protein 
kinase protein | chr2:8335639-8339307 REVERSE LENGTH=2646
Length=2646

 Score =  346 bits (187),  Expect = 2e-94
 Identities = 212/224 (95%), Gaps = 2/224 (1%)
 Strand=Plus/Plus

Query  1    ATGGTGCACTACAACTTTCTCCCGCTGATT-TCATTCGCAAGCTTCTTCGTTGTTTTTGT  59
            |||||||| |||||||||||| |||||||| | ||| ||| ||||||||| |||||||||
Sbjct  1    ATGGTGCATTACAACTTTCTCTCGCTGATTAT-ATTTGCATGCTTCTTCGCTGTTTTTGT  59

Query  60   TCTTCTTGTTCGTGCTCAAGACCAATCAGGTTTTGTCAGTATAGATTGTGGTATACCTGA  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   TCTTCTTGTTCGTGCTCAAGACCAATCAGGTTTTGTCAGTATAGATTGTGGTATACCTGA  119

Query  120  GGATTCAAGCTATAATGATGAAACAACAGACATTAAGTATGTTTCAGATGCTGCTTTTGT  179
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  120  GGATTCAAGCTATAATGATGAAACAACAGACATAAAGTATGTTTCAGATGCTGCGTTTGT  179

Query  180  TGAGTCCGGGACAATTCATAATATAGATCCTGAGTTTCAAACaa  223
            |||||| |||||||||||||  ||||||||||||||||||||||
Sbjct  180  TGAGTCTGGGACAATTCATAGCATAGATCCTGAGTTTCAAACAA  223


 Score =  189 bits (102),  Expect = 4e-47
 Identities = 125/136 (92%), Gaps = 2/136 (1%)
 Strand=Plus/Plus

Query  222  aaaaa-a-aGGAACTCCATTCTTGTCTGTGTTAGAACTCAGGCTCCTGAAGAGTGATACA  279
            ||||| | ||||||||| ||| |||||| ||||||| ||||||||||||||||| |||||
Sbjct  502  AAAAACAGAGGAACTCCGTTCCTGTCTGCGTTAGAAATCAGGCTCCTGAAGAGTAATACA  561

Query  280  TACGAGACTCCTTATGATTCACTTATGCTGTTTAAAAGATGGGATCTTGGGGGGCTCGGT  339
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  562  TACGAGACTCCTTATGATTCACTTATTCTGTTTAAAAGATGGGATCTTGGGGGACTCGGT  621

Query  340  GATCTTCCTGTCAGGT  355
            | |||||| |||||||
Sbjct  622  GCTCTTCCCGTCAGGT  637


 Score = 95.3 bits (51),  Expect = 9e-19
 Identities = 63/69 (91%), Gaps = 0/69 (0%)
 Strand=Plus/Plus

Query  511  GGTTTTGTCAGTATAGATTGTGGTATACCGGAAGATTCAAGCTACAATGACGAGACAACA  570
            ||||||||||||||||||||||||||||| || ||||||||||| ||||| || ||||||
Sbjct  88   GGTTTTGTCAGTATAGATTGTGGTATACCTGAGGATTCAAGCTATAATGATGAAACAACA  147

Query  571  AACATAAAG  579
             ||||||||
Sbjct  148  GACATAAAG  156



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45612605476


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5