BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343326
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17090.1 | Symbols: SSP | Protein kinase protein with tetrat... 2108 0.0
AT2G17170.1 | Symbols: | Protein kinase superfamily protein | ... 375 5e-103
> AT2G17090.1 | Symbols: SSP | Protein kinase protein with tetratricopeptide
repeat domain | chr2:7435088-7437298 REVERSE LENGTH=1398
Length=1398
Score = 2108 bits (1141), Expect = 0.0
Identities = 1307/1389 (94%), Gaps = 4/1389 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTGTTGTTACTCATTATCTTCAACAGTAGATCCTGTTCAAGACCACACGACCGAT 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTGTTGTTACTCACTATCTTCAACAGTAGATCCTGTTCAAGACCACACGACCGAT 60
Query 61 GCTTCTTCTGAACCTAGAAACGGAGGAGGAGAAGATCCACCATTGATAAAATTCTCTTTC 120
|||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 61 GCTTCTTCCGAACCTAGAAACGGCGGAGGAGAAGATCCACCATTGACAAAATTCTCTTTT 120
Query 121 TCCGATCTCAAGACAGCAACCAATCATTTTTGTCCCGAAAACATCGTTTCAGATCAAACC 180
|||| ||||||||| || || ||||||||| |||||||||||||||||||||||||||||
Sbjct 121 TCCGCTCTCAAGACGGCCACAAATCATTTTAGTCCCGAAAACATCGTTTCAGATCAAACC 180
Query 181 TCCGATGTTGTCTTTAAGGGCCGTTTACAAAACTGTGGTTTCATCTCTGTCAAGAGATTT 240
||||||||||||||||| || ||||| |||||| |||||||| || || |||||||||||
Sbjct 181 TCCGATGTTGTCTTTAAAGGACGTTTGCAAAACGGTGGTTTCGTCGCTATCAAGAGATTT 240
Query 241 AATAACATGGCTTGGTCTGATCCTAAACTCTTTGTGGAAGAGGCACAAAGAGTAGGGAAG 300
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 241 AATAACATGGCTTGGTCTGATCCTAAACTATTTTTGGAAGAGGCACAAAGAGTAGGGAAG 300
Query 301 TTAAGACACAAGAGACTCGTAAATTTGATTGGATATTGCTGTGATGGAGATAAAAGGTTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTAAGACACAAGAGACTCGTAAATTTGATTGGATATTGCTGTGATGGAGATAAAAGGTTT 360
Query 361 CTTGTTGCAGATTTGATGCCAAATGATACTCTTGCTAAGCGTTTATTCCAGCGGAAAAAT 420
|||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||| ||
Sbjct 361 CTTGTTGCAGATTTCATGGCTAATGATACTCTTGCGAAGCGTTTATTCCAGCGGAAATAT 420
Query 421 CAAACCATGGATTGGTCTATTAGGTTAAGAGTAGCCTATTGTGTAGCGGAAGC-TCTGGA 479
|||||||||||||||||||||||||||||||| ||||||| |||||| ||||| | ||||
Sbjct 421 CAAACCATGGATTGGTCTATTAGGTTAAGAGTCGCCTATTTTGTAGCTGAAGCAT-TGGA 479
Query 480 TTATTGCAACACTTCAGGCTTTGCATCGTACAGTAATTTAAGTGCTTACAAGGTTTTGTT 539
||||||||||||| ||||||||||||| |||| ||| ||||| |||||||||||||||||
Sbjct 480 TTATTGCAACACTGCAGGCTTTGCATCATACAATAACTTAAGCGCTTACAAGGTTTTGTT 539
Query 540 TGATGAGGATGGTGATGCATGTCTTTCTTGTTTCGGCTTGATGAAGGAGATCAATAATGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 TGATGAGGATGGTGATGCATGTCTTTCTTGTTTCGGCTTGATGAAGGAGATTAATAATGA 599
Query 600 TCAAATAACAACAGGAAGTGTGAACCCTGAAAATGTGATATATAGATTTGGTACTCTCCT 659
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 600 TCAAATTACAACAGGAAGTGTGAACCCTGAAAATGTGATATACCGATTTGGTACTGTCCT 659
Query 660 AGTGAATCTTCTAAGTGGAAAGCAAATTCCTCCAAGCCATGCTCCTGAGATGATACATCG 719
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 TGTGAATCTTCTAAGTGGAAAGCAAATTCCTCCAAGCCACGCTCCTGAGATGATACATCG 719
Query 720 AAAGAATGTTTTTAAGTTGATGGATCCATACCTGAAGGGGAAGTTCTCCATAGATGAAGC 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAAGAATGTGTTTAAGTTGATGGATCCATACCTGAAGGGGAAGTTCTCCATAGATGAAGC 779
Query 780 TACCGTAGTTTACAAACTCGCCTCTCAATGTTTGCAGTACGAGGATCACGAGAGTCCCAA 839
|| ||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||
Sbjct 780 TAACGTAGTTTATAAACTCGCCTCTCAATGTTTGAAGTACGAGGGTCAAGAGAGTCCCAA 839
Query 840 CACAAAAGAGATTGTTGCAACACTTGAAACCTTGCAAACTAGAACAGAAGCTCCATCACA 899
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 840 CACAAAAGAGATTGTTGCAACGCTTGAAACCTTGCAAACTAGAACAGAAGCTCCATCATA 899
Query 900 TGAAGTTATTGAAATGGCAA-CCGACGAGAAGGAGGCATCATCGTCAAGTCATCTTTCGC 958
||||||| |||||||| ||| || | |||||||| ||||||||||||||| |||||||||
Sbjct 900 TGAAGTTGTTGAAATGACAAACCAA-GAGAAGGATGCATCATCGTCAAGTAATCTTTCGC 958
Query 959 CACTAGGAGAGGCTTGTTCGAGAATAGACCTCGAATCTATTCATAAAATCTTGGTGTTGG 1018
|||||||||||||||||| |||||| ||||||| ||| |||||| ||||||||| ||||
Sbjct 959 CACTAGGAGAGGCTTGTTTGAGAATGGACCTCGCATCGATTCATTCAATCTTGGTCTTGG 1018
Query 1019 CAGGATATGAGGATGACAAGGATGTCATCGAGTTATCTTTCGAAGAATGGATACAAGAGG 1078
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1019 CAGGATATGATGATGACAAGGATATCATCGAGTTATCTTTCGAAGAATGGATACAAGAGG 1078
Query 1079 TGAGAGAACTTCAAGATGTTCGAAGACACGGTGATCGGGCCTTCGTAGAGGAAGACTTCA 1138
||| |||||||||||||||||||||| |||||||||| |||||||||||| |||||||||
Sbjct 1079 TGAAAGAACTTCAAGATGTTCGAAGAAACGGTGATCGAGCCTTCGTAGAGCAAGACTTCA 1138
Query 1139 AAACCGCCATCGCCTGTTATTCTCAGTTTGTTGAGGAAAGGTCAATGGTATACCCAAGTG 1198
||||||| || ||||||||||||||||| ||||| || |||||| |||||||||||||||
Sbjct 1139 AAACCGCTATTGCCTGTTATTCTCAGTTCGTTGAAGAGAGGTCATTGGTATACCCAAGTG 1198
Query 1199 TTTACGCGAGGCGTAGTCTAAGCTATCTATTCTGCGATGAGCCAGAAAAAGCCCTTCTCG 1258
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1199 TTTACGCAAGGCGTAGTCTAAGCTATCTATTCTGCGATGAGCCAGAAAAGGCCCTCCTCG 1258
Query 1259 ATGGTATGCATGCACAGGGAGTGTTCCCTGATTGGCCAACCGCCTTCTACTTGCAGTCTG 1318
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1259 ATGGGATGCATGCACAGGGAGTGTTTCCTGATTGGCCAACCGCCTTCTACTTGCAGTCTG 1318
Query 1319 TGGCATTAGCCAAACTCAACATGAACACTGATTCTGCTAATACTTTGAAAGAAGCAGCTC 1378
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1319 TGGCATTAGCCAAACTCGACATGAACACTGATTCTGCTGATACTTTGAAAGAAGCAGCTC 1378
Query 1379 TTCTTGAAG 1387
|||||||||
Sbjct 1379 TTCTTGAAG 1387
> AT2G17170.1 | Symbols: | Protein kinase superfamily protein
| chr2:7474736-7476438 FORWARD LENGTH=987
Length=987
Score = 375 bits (203), Expect = 5e-103
Identities = 535/688 (78%), Gaps = 52/688 (8%)
Strand=Plus/Plus
Query 227 CTGTCAAGAGATTTAATAACATGGCTTGGTCTGATCCTAAACT-CTTTGTGGAAGAGGCA 285
||||||||||||| || || | | ||||| ||||||| ||| ||| |||||| |||
Sbjct 245 CTGTCAAGAGATTCAAGAATACGCCTTGGGATGATCCT-GACTACTTCACGGAAGACGCA 303
Query 286 CAAAGAG-TAGGGAAG-TTAAGACACAAGAGACTCGTAAATTTGATT-GGATATTGCTGT 342
||| || | ||| || | ||| ||||||||||| || || ||| || |||||||||||
Sbjct 304 AAAACAGCT-GGGGAGCTAAAG-CACAAGAGACTTGTCAAGTTG-TTGGGATATTGCTGC 360
Query 343 GATGG-AGATAAAAGG-TTTCTTGTTGCAGA-TTTGATGCCAAATGATACTCTTGCTAAG 399
|| || |||| |||| ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 361 GA-GGAAGAT-GAAGGACTTCTTGTTGCAGAGTTT-ATGCCAAATGATACTCTTGCTAAG 417
Query 400 CGTTTATTCCAGCGGAAAAATCAAACCATGGATTGGTCTATTAGGTTAAGAGTAGCCTAT 459
|||||||||||| | | || || | ||||| ||||| || ||||| |||| || |||
Sbjct 418 CGTTTATTCCAG-G-AGAAG--AA-C-ATGGAATGGTCAATGAGGTTGCGAGTGGCGTAT 471
Query 460 TGTGTAGCGGAAGC-TCTGGATTATTGCAACACT-TCAGGCTTTGCATCG--TAC-AGTA 514
| ||| ||||| | ||||||||||||| || | | | |||| | || ||| | ||
Sbjct 472 CATATAGTTGAAGCAT-TGGATTATTGCAATTCTGT-ACGTTTTG-A-CGAGTACGA-TA 526
Query 515 ATTTAAGTGCTTACAAGGTTTTGTTTGATGAGGATGGTGATGCATGTCTTTCTTGTTTCG 574
|| |||||||||||| ||| |||||||| ||||||||||||| ||||||||| ||||||
Sbjct 527 ATCTAAGTGCTTACACTGTTCTGTTTGATAAGGATGGTGATGCCTGTCTTTCTAGTTTCG 586
Query 575 GCTTGATGAAGGAGATCAA---TAATGATCAAATAACAAC-AGG-AA-GTGTGAACCCTG 628
||||| |||| ||||||| | | ||| || | || ||| || ||| | || ||
Sbjct 587 GCTTGGTGAAAGAGATCATCCGTTACAATCGAAGAG-AAGGAGGGAACGTGAGGAC--TG 643
Query 629 AAAATGTGATATATAGATTTGGTACTCTCCTAGTGAATCTTCTAAGTGGAAAGCAAATTC 688
||||||| ||| |||||||||||| |||| |||||||| |||| |||| |||||||
Sbjct 644 GGAATGTGACATACAGATTTGGTACTATCCTTGTGAATCTGCTAACTGGATTGCAAATTT 703
Query 689 CTCCAAGCCATGCTCCTGAGATGATACA-TCGAAAGAATGTTTTTAAGTTGATGGATCCA 747
|||| |||||||||||||||||||| || | ||||| |||| | || | |||||||||
Sbjct 704 CTCCGAGCCATGCTCCTGAGATGAT-CAATGGAAAGGATGTCACTGAGCTCATGGATCCA 762
Query 748 TACCTGAAGGGGAAGTTCTCCATAGATGAAGCTACCGTAGTTT-ACAAACTCGCCTCTCA 806
| |||||||| |||||||| | ||| |||||||| |||||| | |||||||||||| |
Sbjct 763 AATCTGAAGGGAAAGTTCTCTACAGAAGAAGCTACTATAGTTTTA-AAACTCGCCTCTGA 821
Query 807 ATGTTTGCAGTACGA-GGATCACG-AGAG--TCCCAACAC-AAAAGAGATTGTTGCAACA 861
||||||||||| || || | | |||| | || ||| |||| || |||||||||||
Sbjct 822 ATGTTTGCAGTG-GAAGGGTTATATAGAGAATGGCATCACTAAAA-AGCTTGTTGCAACA 879
Query 862 CTTGAAA-CCTTGCAAACTAGAACAGAA 888
||| ||| ||||||| ||| || ||||
Sbjct 880 CTT-AAAGCCTTGCAGGCTAAAAAAGAA 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5