BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg343360

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17442.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   263    1e-69


> AT2G17442.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:7573835-7575939 
REVERSE LENGTH=810
Length=810

 Score =  263 bits (142),  Expect = 1e-69
 Identities = 169/182 (93%), Gaps = 2/182 (1%)
 Strand=Plus/Plus

Query  399  GTT-GAAAGAAAAGGAAAAGAAGTTGGACGATCTAGGGCAGTTGTATAGGGCTCCTCAAA  457
            ||| |||| |||||||||||| |||||||||||||||| |||||| |||||| |||| ||
Sbjct  405  GTTGGAAA-AAAAGGAAAAGATGTTGGACGATCTAGGGAAGTTGTTTAGGGCGCCTCGAA  463

Query  458  TGGATGTGTTGAAAGAAAAGGAAACGAAGTTGGACTATCTAGGGCAGCTGTATAGGGCTC  517
            ||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| ||||
Sbjct  464  TGGATGTGTTGAAAGGAAAGGAAAAGAAGTTGGACTATCTAGGGCAGTTGTATAGTGCTC  523

Query  518  CTCGAATGGATGTGTTGAAAGAAATTAAAAACGCCGATGGACGATACGCAGGAAGAAACT  577
            ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  524  CTCGAATGGATTTGTTGAAAGAAATTAAAAACGCCGATGGACGATATGCAGGAAGAAACT  583

Query  578  AA  579
            ||
Sbjct  584  AA  585


 Score =  110 bits (59),  Expect = 2e-23
 Identities = 63/65 (97%), Gaps = 0/65 (0%)
 Strand=Plus/Plus

Query  123  GAAGAAGGGAATATTTGGGAGAGCTTTTGCGAATGCACCAATATTTGCTCTTGGATACTT  182
            |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  174  GAAGAAGGGATTATTTGGGAGAGCTTTTGCGAATTCACCAATATTTGCTCTTGGATACTT  233

Query  183  CACAA  187
            |||||
Sbjct  234  CACAA  238



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5