BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg343360 Length=579 Score E Sequences producing significant alignments: (Bits) Value AT2G17442.1 | Symbols: | unknown protein; Has 30201 Blast hits... 263 1e-69 > AT2G17442.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:7573835-7575939 REVERSE LENGTH=810 Length=810 Score = 263 bits (142), Expect = 1e-69 Identities = 169/182 (93%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 399 GTT-GAAAGAAAAGGAAAAGAAGTTGGACGATCTAGGGCAGTTGTATAGGGCTCCTCAAA 457 ||| |||| |||||||||||| |||||||||||||||| |||||| |||||| |||| || Sbjct 405 GTTGGAAA-AAAAGGAAAAGATGTTGGACGATCTAGGGAAGTTGTTTAGGGCGCCTCGAA 463 Query 458 TGGATGTGTTGAAAGAAAAGGAAACGAAGTTGGACTATCTAGGGCAGCTGTATAGGGCTC 517 ||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| |||| Sbjct 464 TGGATGTGTTGAAAGGAAAGGAAAAGAAGTTGGACTATCTAGGGCAGTTGTATAGTGCTC 523 Query 518 CTCGAATGGATGTGTTGAAAGAAATTAAAAACGCCGATGGACGATACGCAGGAAGAAACT 577 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 524 CTCGAATGGATTTGTTGAAAGAAATTAAAAACGCCGATGGACGATATGCAGGAAGAAACT 583 Query 578 AA 579 || Sbjct 584 AA 585 Score = 110 bits (59), Expect = 2e-23 Identities = 63/65 (97%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 123 GAAGAAGGGAATATTTGGGAGAGCTTTTGCGAATGCACCAATATTTGCTCTTGGATACTT 182 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 174 GAAGAAGGGATTATTTGGGAGAGCTTTTGCGAATTCACCAATATTTGCTCTTGGATACTT 233 Query 183 CACAA 187 ||||| Sbjct 234 CACAA 238 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27829717438 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5