BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343365
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53330.1 | Symbols: | plastocyanin-like domain-containing p... 640 0.0
> AT3G53330.1 | Symbols: | plastocyanin-like domain-containing
protein | chr3:19772930-19773938 FORWARD LENGTH=933
Length=933
Score = 640 bits (346), Expect = 0.0
Identities = 568/668 (85%), Gaps = 44/668 (7%)
Strand=Plus/Plus
Query 334 GGAC-TGAAGCTCGACGTTCTTGTTGTCCATGACAAGTCACGTCCGATTCCTCCACCACC 392
|||| ||| | || ||||| |||| |||||||| |||||||||||||| |||||||||||
Sbjct 259 GGACATGATG-TC-ACGTTTTTGTCGTCCATGAAAAGTCACGTCCGATCCCTCCACCACC 316
Query 393 ACCACCGAGCAAGATCCATGAACCCTCACG------T--CC-GT-CTCC-T--CCACCAC 439
|| | ||||||| |||||||| ||||| | || | |||| | |||||||
Sbjct 317 ACGA---AGCAAGACCCATGAACGGTCACGACCCATTAGCCATTACTCCTTCACCACCAC 373
Query 440 CACC-GGCCAAGATCAATGAACCCTCACGTCCGA-T--TCCTCCACCACCACCACCGAGC 495
|||| | ||||| | |||||| ||||| || | | |||| ||||||||||||| |||
Sbjct 374 CACCAAG-CAAGACCCATGAACGGTCACGACCCATTACTCCTTCACCACCACCACCAAGC 432
Query 496 AAGATCCATGAACCCTCACGTCCG--T-CTCCT------CCACCACCACCG-GCCAAGAT 545
|||| ||||||||| ||||||||| | ||||| |||||||||||| | |||||
Sbjct 433 AAGACCCATGAACCGTCACGTCCGAATACTCCTCCACCACCACCACCACCGAG-CAAGAC 491
Query 546 CAATGAACCCTCACGTCCG-A-T--TCCTCCACCACCACCACCAAGCAAGATCTTTCCTT 601
| |||||||||||||| || | | |||| ||||||||||||| ||||||||| ||||||
Sbjct 492 CCATGAACCCTCACGT-CGCATTACTCCTTCACCACCACCACCGAGCAAGATCCTTCCTT 550
Query 602 TTGGTAAAATCTACAAG-GTAGGTGACTCCAGAGGATGGAGCGTTTATAACAGTTACTAC 660
||||||| |||||| || || ||||||| | ||||||||||||||||| |||||||||||
Sbjct 551 TTGGTAAGATCTAC-AGAGTTGGTGACTACGGAGGATGGAGCGTTTATTACAGTTACTAC 609
Query 661 TATTACAAATGGAGTGAAGGCAAACAGTTTTATGTTGGAGATACTCTCTTTTTCGAATAC 720
|||||||| |||||||| || ||||||||| |||||| |||||||||||||||| |||||
Sbjct 610 TATTACAAGTGGAGTGAGGGTAAACAGTTTCATGTTGAAGATACTCTCTTTTTCCAATAC 669
Query 721 AACAAGTACCTCAACGACGTTAGGGAAATCAGCAATGATCTTGACTTCAAATCTTGCGAA 780
|||||| | |||||||||||||||||||||| | |||| ||||| |||| ||||||||||
Sbjct 670 AACAAGGAACTCAACGACGTTAGGGAAATCACCGATGAACTTGAGTTCAGATCTTGCGAA 729
Query 781 -CAGAATTCTACTGTAGCCGTGTACAAGACCGGACACGATCTGGTTAAGCTCACCAAACC 839
| || |||||||||||| |||||||| || ||||||||||| |||||||||| |||||
Sbjct 730 TC-GACTTCTACTGTAGCTGTGTACAAAACGGGACACGATCTCATTAAGCTCACTAAACC 788
Query 840 AGGAGTGTATTATTTTGTAAGCTTAAAGACCGGTCTTTGTCAGGCTGGGATTAAGCTTCG 899
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AGGAGTGCATTATTTTGTAAGCTTAAAGACCGGTCTTTGTCAGGCTGGGATTAAGCTTCG 848
Query 900 AGTCACGGTGCAACCATCAAGCGAAGCCGTTCCTTTCCCGAATGTTCCCAGGAAGAAGTT 959
|||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||||||
Sbjct 849 AGTCACGGTGCAACCATCAACCGAAGCTGTTACTTTCCCGAATGTTCCCAAGAAGAAGTT 908
Query 960 GTCACCTA 967
||||||||
Sbjct 909 GTCACCTA 916
Score = 283 bits (153), Expect = 2e-75
Identities = 235/274 (86%), Gaps = 8/274 (3%)
Strand=Plus/Plus
Query 1 ATGATCACAAAGAAGATCTTTGGCTTTGTGCTCATGATCACAATTCTCTTT-GCTTGCTG 59
||||||||||||||||||||||||||||||||| |||||| |||||||| | ||||||
Sbjct 1 ATGATCACAAAGAAGATCTTTGGCTTTGTGCTCGCGATCACGATTCTCTTGAG-TTGCTG 59
Query 60 CTCTGCGACAACCTACAAAGTGGGAGGTTCTA-ATGGATGGTA-TGGGAAGAAGAACTCT 117
||| |||| || ||||||||| |||||||||| | || ||| | |||||||| |||||||
Sbjct 60 CTCGGCGAAAATCTACAAAGTTGGAGGTTCTAGAGGG-TGG-AGTGGGAAGACGAACTCT 117
Query 118 TGGGTTGTGCATAAGGACTTCCACGTCGGAGATACTCTGATCTTCGAATACGATCAGAAC 177
|||| || || |||||| ||||||||||| ||| || |||||||| ||||| ||||||||
Sbjct 118 TGGGCTGAGCGTAAGGAATTCCACGTCGGGGATTCTTTGATCTTCCAATACCATCAGAAC 177
Query 178 GTCAACGACGTTACTCAAGTCTAC-AGCGCTTTAGAGTATGAGTCATGCGACTCTTCTTC 236
|| |||||||| |||||| ||| | | |||||| |||| ||||||||| |||| |||||
Sbjct 178 GTTAACGACGTCACTCAACTCTCCGAT-GCTTTAAAGTACGAGTCATGCAACTCCTCTTC 236
Query 237 TCCTAAAGCCGTTTACAACACCGGACACGATGTC 270
|||||||||||||||||| || ||||| ||||||
Sbjct 237 TCCTAAAGCCGTTTACAATACAGGACATGATGTC 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5