BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343376
Length=2346
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17550.1 | Symbols: | unknown protein; Has 264 Blast hits t... 3568 0.0
> AT2G17550.1 | Symbols: | unknown protein; Has 264 Blast hits
to 258 proteins in 65 species: Archae - 5; Bacteria - 5; Metazoa
- 66; Fungi - 16; Plants - 107; Viruses - 0; Other Eukaryotes
- 65 (source: NCBI BLink). | chr2:7634283-7637832 REVERSE
LENGTH=3172
Length=3172
Score = 3568 bits (1932), Expect = 0.0
Identities = 2227/2364 (94%), Gaps = 42/2364 (2%)
Strand=Plus/Plus
Query 1 ATGGGAGGATTATTGCATCTCTTCGATTTCCACAACAACAGTTTCTCCCGGAAAGTTTTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 621 ATGGGAGGATTATTGCATCTCTTCGATTTCCACAACAACAGTTTCTCCCGTAAAGTTTTC 680
Query 61 TCTCATCACAAAAGCCGCGACGAAGATCTGGAAGCTCCAAGAAATAGTTTTGAGCTTCAA 120
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 681 TCTCATCACAAAAACCGCGACGAAGATCTGGAAGCTCCAAGAAATAGTTTCGAGCTTCAA 740
Query 121 GTCGATAACTTTCATACATACCATAACGAGAAAGATAAACCGAGTAATGGATTTGAGGAA 180
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 741 GTCGACAACTTTCATACATACCATAACGGGAAAGATAAACCGAGTAATGGATTTGAGGAA 800
Query 181 GAGGAATGGTACGAGAGAAGTTGTTACCCAATTGAGGAGTCAATGAAGAAGAAGATCATC 240
|||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||
Sbjct 801 GAGGAATGGTACGAGAGAAGTTGTTATCCAATAGAGGAATCAATGAAGAAGAAGATAATC 860
Query 241 GAGGAGCTTTCGAAACGGTCCAACGATAAACAGAACACGCCGAGTCTTGTAGCTAAGTTG 300
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 861 GAGGAGCTTTCGAAACGTTCCAACGATAAGCAGAACACGCCGAGTCTTGTAGCTAAGTTA 920
Query 301 ATGGGAATGGATGCACTTCCTTTGGAGTCTGCTAAGTCA---TCGGCTTGGATCTATCCT 357
||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||
Sbjct 921 ATGGGAATGGATGCACTTCCTTTAGAGTCTGTTAAGTCATCGTCGGCTTGGATCTATCCT 980
Query 358 CGTCAGAGTAAAGTGAATCGATTTGATGATGAGAAAGGAGGAAGAAGAAAAAGTAGAAAA 417
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 981 CGTCAGAGTAAAGTGAATAGATTTGATGATGAGAAAGGAGGAAGAAG---AAGTAGAAAA 1037
Query 418 GGAAGGTTATCTTCATCGGTGATTGCATTGGATGTAATGGAGACACCAATCCGTAGAGAA 477
|| |||||||||||| | |||| |||||||||||||||||||||||||| |||||||||
Sbjct 1038 GGGAGGTTATCTTCAGCAGTGACCGCATTGGATGTAATGGAGACACCAATGCGTAGAGAA 1097
Query 478 CATCCTCAAGAAGAGGAGCTACAAAGATTTAGAAGAGAGTTTGAAGCTTGGCAAGCTGAT 537
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1098 CATCCTCAAGAAGAGGAGCTACAAAGATTCAGAAGAGAGTTTGAAGCTTGGCAAGCTGAT 1157
Query 538 AAAAGGTTTCAAGATTGTTCAAGAATCGTTGATTCGGGCTGCGTGGTGGCTCGGGATGAG 597
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 AAAAGGTTTAAAGATTGTTCAAGAATCGTTGATTCGGGCTGCGTGGTGGCTCGGGATGAG 1217
Query 598 ---AAAGAGAGGCTTTTCACAAGAACTAGGAGCTTTGGTAGGGATTTTATCTTGAAATCT 654
||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct 1218 AATAAAGAGAGGCTTTTCACGAGAACTAGGAGCTTTGGTAGAGATTTTACCTTGAAATCT 1277
Query 655 GATAGGACTGCTCCAACTAGGATTGTGGTTCTGAGACCTGGTCTTCAGAGAGCGTATGAT 714
||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 1278 GATAGAACTGCTCCAACTAGGATTGTTGTACTGAGACCTGGTCTTCAGAGAGCTTATGAT 1337
Query 715 TACGAAGATTCGTTGACTACTTCTTCAGGGACGACCATGGAAGGAAGCAGAGGAAGTAGC 774
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1338 TACGAAGATTCGTTGACTACTTCTTCAGGGACGACAATGGAAGGAAGCAGAGGAAGTAGT 1397
Query 775 ATAGAAGAGTTTCTTGAGGAAGTTAAAGAGAGGTTAAAAGGTGAGCTTCAAGGAAAAGCA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 ATAGAAGAGTTTCTTGAGGAAGTTAAAGAGAGGTTAAAAGGTGAGCTTCAAGGAAAAGCA 1457
Query 835 GCTCTCAAGAGAAGTTCATCAGTGAGAGGAAGCGGTATCGAGACTCCTTTCAGCGAAAGA 894
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1458 GCTCTCAAGAGAAGTTCATCAGTTAGAGGAAGCGGGATCGAGACTCCTTTCAGCGAAAGA 1517
Query 895 CCTTCTCCGAGGTCTGAATCGATGAGATCATATGCAGTGAGTGAGGTTCAGTGCAATGCA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 CCTTCTCCGAGGTCTGAATCGATGAGATCATATGCAGTGAGTGAGGTTCAGTGCAATGCA 1577
Query 955 CCAGACTCTCCTACTGAGTTTATAAGTAGAGATACTAGAAAACTTTTGGCAGACAGATTG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1578 CCAGACTCTCCTACTGAGTTTATAAGTAGAGATACTAGAAAACTTTTGGCAGAGAGATTG 1637
Query 1015 AAGAATGTTTTGAGAAAAGAAATTACTCCTTCAGATGATTCTGTGGTTAAATGTAGTAGC 1074
|||||||||||||||||||| || ||||||||| ||||||||||| |||| |||||||
Sbjct 1638 AAGAATGTTTTGAGAAAAGAGATGACTCCTTCACATGATTCTGTGACCAAATCTAGTAGC 1697
Query 1075 CGTTTACGACCTACTGTGTCGGATGCAGCGAAACAAGCTGAGGAAATTAATCAAGAAGAC 1134
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1698 CGTTTGCGACCTACTGTGTCGGATGCAGCGAAACAAGCTGAGGAAATCAATCAAGAAGA- 1756
Query 1135 TCGAGAATAAATGGAGATGTTTCTAAGAAAGATTCTTTATCACCAAGAAATCTCAAAAGA 1194
| | | | | |||||||||| |||||||||||||||||||||||||||
Sbjct 1757 T-G----T---T-----T----CTAAGAAAGAGTCTTTATCACCAAGAAATCTCAAAAGA 1799
Query 1195 TCATTATCTGCTCCTGTCTCAGGAACATCATTTGGTAAGCTTCTGTTAGAGGACCGGCAT 1254
||| ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 1800 TCACTATCTGCTCCTGTCTCAGGGACATCGTTTGGTAAGCTTTTGTTAGAGGACCGGCAT 1859
Query 1255 GTTTTGACTGGCGCGCAGATCATGAGAAAGCACGAGGCTACGATAACAGAGCGAGAAGAA 1314
|||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1860 GTTTTGACAGGCGCACAGATCATGAGGAAGCACGAGGCTACAATAACAGAGCGAGAAGAA 1919
Query 1315 ACAGAA-C-----CAGT---TGTTGT-G--GATCCTATCAGGAGGAAAGAAAGATTCAAT 1362
|||||| | ||| |||||| | ||||| ||||||||||||||||||||||||
Sbjct 1920 ACAGAATCAGAAACAGAACCTGTTGTTGTTGATCCAATCAGGAGGAAAGAAAGATTCAAT 1979
Query 1363 CTTAGGAAGAAAGTTTCCAGCTTTAGATCAACTCTTAGAGGAAGAATCTTTGGTAAGAAG 1422
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 CTTAGGAAGAAAGTGTCCAGCTTTAGATCAACTCTTAGAGGAAGAATCTTTGGTAAGAAG 2039
Query 1423 ATACGTTCAATGATCGAGTCAAACAGTTTCGAGGATGAATCAATCAAAGATTTCGTGACG 1482
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2040 ATACGTTCAATGATCGAATCAAACAGTTTCGAGGATGAATCAATCAAAGACTTCGTGACC 2099
Query 1483 GGATCGAAGTTTAACAACTTTTACGATCGAAATGAGAATTCAACAGAAGTGCCTCCAAGC 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 GGATCGAAGTTTAACAACTTTTACGATCGAAATGAGAATTCAACAGAAGTGCCTCCAAGC 2159
Query 1543 CCTGCATCAGTCTGCAGCAGTACACCAGAAGAGTTCTGGAGGAATGTCGATTATCTCAGC 1602
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2160 CCTGCATCAGTCTGCAGTAGTACACCAGAAGAGTTCTGGAGAAATGTCGATTATCTCAGC 2219
Query 1603 CAGGTTTCGACACCCGATGTGACTGTATCGGATGAGAATGGTATGCCTCAAGTCTTCAGA 1662
|||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2220 CAGGTTTCAACACCTGACGTGACTGTATCGGATGAGAATGGTATGCCTCAAGTTTTCAGA 2279
Query 1663 GACATCAGTTCTAATCTAAGTGAACTAAGAAGACAGATAAATGAGCTTGAGTCCGATGTA 1722
||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2280 GACATTAGTTCCAATCTAAGTGAACTAAGAAGACAGATAAATGAGCTTGAATCCGAGGTA 2339
Query 1723 CAAGTGAGAACGCCTGTGGAAGAAGAACCGACTCAAGAGACTGAGACCATAGTTGATTTA 1782
|||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2340 CAAGTGCGAACACCTGTGGAAGAAGAACCGATTCAAGAGATTGAGACCATAGTTGATTTA 2399
Query 1783 GGAAATCCAGACAAAGTATTTGTGAGAGATCTTCTTGTGGTTTCTGGTTTGTATGAAGGG 1842
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2400 GGAAATCCAGACAAAGTATTTGTGAGAGATCTTCTTGTGGCTTCTGGTTTGTATGAAGGC 2459
Query 1843 ACATCAGATATATCATTGTCTAGATGGGATCCATTAGCAAAGCCTATAAAAAAGTCTGTT 1902
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2460 ACATCAGATATATCATTGTCTAGATGGGATCCATTAGCAAAGCTTATAAAAAAGTCTGTT 2519
Query 1903 CTTgaagaagcaaaagagaatctcaagaaaagaagcaatcagaatcaagaagacgaagaT 1962
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2520 CTTGAAGAAACAAAAGAGAATCTCAAGAAAAGAAGCAATCAGAATCAAGAAGACGACGAC 2579
Query 1963 ACCGGAGAGAATAATACTATAAGTGAAGAAAACCATAACATACTGTTTGATCTTCTGAAT 2022
|| ||||||| || |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2580 ACAGGAGAGACTA---CTATAAGTGAAGAAAATCACAACATACTGTTTGATCTTCTGAAT 2636
Query 2023 GAAGTACTTACGGTGGTGCTTGGACCATTGACAAAGTCAGGTTTCAAGAACAAACTTTTG 2082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2637 GAAGTACTTACGGTGGTGCTTGGACCATTGACAAAGTCAGGTTTCAAGAACAAACTTTTG 2696
Query 2083 AGTTCATCGGTGTCTGAATCGACGACTATACGAGGTAAATATCTGTTGGAATCAACATGG 2142
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2697 AGTTCATCTGTGTCTGAATCAACGACTATACGAGGTAAATATCTGTTAGAATCAACATGG 2756
Query 2143 AGGATCATGTCCGAGTATTTATATTCTCAGCCAGAGAAACCTTTCTGTTCATTGGATGGG 2202
| ||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 2757 AAGATCATGTCGGAGTATTTATATTCTCAGCCAGAGAGACCTTTTTGTTCATTGGATGGG 2816
Query 2203 ATCATTGGTTGGGACATGGATAGGTTTCCATGGAGTGGTTTGATTAGTGAAGAAGTTAAT 2262
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 2817 ATCATTGGTTGGGACATGGATAGGTTTCCATGGAGTGCTTTGATTGGTGAAGAAGTTAAT 2876
Query 2263 GTGTTGGGGAAAGAAGTTGAAGGTATGATCATGGCGGATCTTGTTGAGGAGCTTGTTAAG 2322
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2877 GTGTTGGGGAAAGAAGTTGAAGGTATGATCATGGCAGATCTTGTTGAGGAACTTGTTAAG 2936
Query 2323 GATCTAAGAAGACAAATATGCTAA 2346
|||||||||||||||||||| |||
Sbjct 2937 GATCTAAGAAGACAAATATGTTAA 2960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116465264400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5