BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343386
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40140.1 | Symbols: | RING/U-box superfamily protein with A... 1293 0.0
> AT5G40140.1 | Symbols: | RING/U-box superfamily protein with
ARM repeat domain | chr5:16057347-16058999 FORWARD LENGTH=1653
Length=1653
Score = 1293 bits (700), Expect = 0.0
Identities = 798/846 (94%), Gaps = 3/846 (0%)
Strand=Plus/Plus
Query 25 TGGTGTGAACGACGGTGTTTTCCACCGCCGAAGCCACTCGATTCCGCCGCCGAGGAGAAG 84
||||||||||| ||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 358 TGGTGTGAACGGCGGTGTTTTCCACCGCCGAAGCCACTCAACTCCGCCGCCGCGGAGAAG 417
Query 85 CTTATACTCACATTAATTGAGAAAACACCACAAAGAAG---AGTCTCTGTTTCAGAGAAA 141
||||||||| ||||||| ||||||| |||||||||||| ||| |||||||||||||||
Sbjct 418 CTTATACTCGCATTAATGGAGAAAAAACCACAAAGAAGAAAAGTATCTGTTTCAGAGAAA 477
Query 142 GAGCTTATCAAAGCAATCAAAGATAAACCATCAGTGAGACTTAACCACGCTGCGACGGAG 201
||||||||| |||| || | |||||||||||||||||||||||||||||| |||||||||
Sbjct 478 GAGCTTATCCAAGCTATTAGAGATAAACCATCAGTGAGACTTAACCACGCCGCGACGGAG 537
Query 202 CTTGACCGGAGACCTAACTACTTCAATTCAAGCTCCGACGAGTCAATAGCTTCTTCAAGC 261
||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 538 CTTGATCGGAGACCTAATTACTTCAACTCAAGCTCCGATGAGTCAATAGCTTCTTCAAGC 597
Query 262 TGTACACTACAGTTAACAACTAAACCTAGTTGCTTCTCTTCACCTTCATCTGGAGAAATC 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CGTACACTACAGTTAACAACTAAACCTAGTTGCTTCTCTTCACCTTCATCTGGAGAAATC 657
Query 322 GAATCTTTAGAACCAAACCTAACTCCAGAAGAAGAAGCTTTACTAACAAAGCTTAAGAGT 381
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 658 GAATCTTTAGAACCTAACCTAACTCCAGAAGAAGAAGCTTTACTAACAAAGCTAAAAAGT 717
Query 382 AATCGAATCTCAGAGATTGAAGAAGCTTTGATTTCGATTCGACGCGTTACAAGAATCGAC 441
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 718 AATCGAATCTCAGAGATTGAAGAAGCTTTGATTTCGATTCGACGCATCACAAGAATCGAT 777
Query 442 GAAGGTTCAAAAATCAGTTTATGTACAACGAGACTAATCTCTGCACTTAAGTCACTGATT 501
||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 778 GAAAGTTCAAGAATCAGTTTATGTACAACGAGAGTAATCTCTGCACTTAAGTCACTGATT 837
Query 502 GTTTCGAGATACGCGACGGTTCAGGTCAATGTCACGGTGGTTCTTGTCAACTTGTCTTTG 561
||||| |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||
Sbjct 838 GTTTCCAGATACGCGACGGTTCAGGTGAATGTCACGGCGGTTCTTGTGAACTTGTCTTTG 897
Query 562 GAAAAATCTAATAAAGTTAAGATCGTACGGTCAGGAATCGTTCCACCGTTGATCGACGTT 621
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 GAAAAATCTAATAAAGTCAAGATCGTACGGTCAGGAATCGTTCCTCCGTTGATCGACGTT 957
Query 622 TTGAAATGCGGTTCTGTTGAAGCTCAGGAACATTCCGCCGGAGTTATCTTCAGTTTAGCT 681
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 958 TTGAAATGCGGTTCCGTCGAAGCTCAGGAGCATTCCGCCGGAGTTATCTTCAGTTTAGCT 1017
Query 682 CTTGAAGATGAGAACAAGATGGCGATTGGTGTTCTCGGAGGTTTAGAGTCGTCGCTTCAT 741
||||||||||||||||| | |||||||||||||||||||||||||||| ||| |||||||
Sbjct 1018 CTTGAAGATGAGAACAAAACGGCGATTGGTGTTCTCGGAGGTTTAGAGCCGTTGCTTCAT 1077
Query 742 TTGATCCGAGTTGGTACTGAGTTGACTCGGCATGACTCAGCTTTAGCTTTGTATCATCTC 801
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1078 TTGATCCGAGTTGGTACTGAGTTAACTCGGCATGACTCGGCTTTAGCTTTGTATCATCTT 1137
Query 802 TCTCTTGTACAGAGTAATAGAGGGAAGCTTGTTAAGCTTGGAGCTGTTCAGATGCTTTTG 861
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1138 TCTCTTGTACAGAGTAATAGAGGGAAGCTAGTTAAGCTTGGAGCTGTTCAAATGCTTTTG 1197
Query 862 GGTATG 867
||||||
Sbjct 1198 GGTATG 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5