BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343397
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17770.2 | Symbols: BZIP27 | basic region/leucine zipper mot... 712 0.0
> AT2G17770.2 | Symbols: BZIP27 | basic region/leucine zipper motif
27 | chr2:7723103-7724323 FORWARD LENGTH=960
Length=960
Score = 712 bits (385), Expect = 0.0
Identities = 481/523 (92%), Gaps = 23/523 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGAAGTATGGAAAGAAATCAACAATGGTTCACTTCACTACCATCGCCAACTAAAC 60
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAAGAAGTATGGAAAGAAATCAACCTTGGTTCACTTCACTACCATCGGCAACTAAAC 60
Query 61 ATTGGTCATGAACCAATGTTAAAGAACCAAAACCCTAATAACTCCACCTTTCAAGATTTC 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 ATTGGTCATGAACCAATGTTAAAGAACCAAAACCCTAATAACTCCATCTTTCAAGATTTC 120
Query 121 CTCAACATGCCTCTGAAT----------CA--A-CA--ACCACCTTCTTCTTCCACCATT 165
|||||||||||||||||| || | || ||||||||| ||||||||||||
Sbjct 121 CTCAACATGCCTCTGAATCAACCACCACCACCACCACCACCACCTTCCTCTTCCACCATT 180
Query 166 GTCACTGCTCTCTATGGCTCTCTGCCTCTTCCTCCTCCTGCCACTGTCCTCAGCTTGAAC 225
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 181 GTCACTGCTCTCTATGGCTCTCTGCCTCTTCCGCCTCCTGCCACTGTCCTCAGCTTAAAC 240
Query 226 TCCGGCGTTGGATTCGAGTTTCTTGATACCACAGAAACTCTTGTTGCTTCTAACCCTCAC 285
||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
Sbjct 241 TCCGGTGTTGGATTCGAGTTTCTTGATACCACAGAAAATCTTCTTGCTTCTAACCCTCGC 300
Query 286 TCCTTTGAGGAATCTGCAAGAG-TTGGTTGTCTTGGTAAGAAAAGAAGCCAAGATCCTGA 344
||||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct 301 TCCTTTGAGGAATCTGCAA-AGTTTGGTTGTCTTGGTAAGAAAAGAGGCCAAGATTCTGA 359
Query 345 TGAAAGTAGAGGAGACAGAAGGTATAAGCGAATGATCAAGAACAGAGAATCTGCTGCTCG 404
||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 TGATACTAGAGGAGACAGAAGGTATAAGCGTATGATCAAGAACAGAGAATCTGCTGCTCG 419
Query 405 TTCAAGGGCTAGGAAACAGGAATGTGCATACACAAACGAACTTGAGCTTGAAATTGCTCA 464
||||||||||||| | | | | | ||||| |||||||||||||||||||||||||||||
Sbjct 420 TTCAAGGGCTAGG--A-A-GCA-G-GCATATACAAACGAACTTGAGCTTGAAATTGCTCA 473
Query 465 CTTGCAGACAGAGAATGCAAGACTCAAGATACAACAAGACCAG 507
||||||||||||||||||||||||||||||||||||||| |||
Sbjct 474 CTTGCAGACAGAGAATGCAAGACTCAAGATACAACAAGAGCAG 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5