BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343407
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17860.1 | Symbols: | Pathogenesis-related thaumatin superf... 1103 0.0
AT4G36010.1 | Symbols: | Pathogenesis-related thaumatin superf... 490 1e-137
> AT2G17860.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr2:7762257-7763018 REVERSE LENGTH=762
Length=762
Score = 1103 bits (597), Expect = 0.0
Identities = 704/756 (93%), Gaps = 5/756 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTTGGCTAAAGTCTCTTGCTTTCTCTTTGCGATTCTGTTTTTCATCAATGGTGGT 60
|||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1 ATGGATTTGGCTAAAGTCTCTTGCTTTCTCTTAGCGATTATGTTTTTCATCAATGGTGGT 60
Query 61 TCCTCCACCACTTTCACCATCGTTAACCAGTGTAACTACACCGTCTGGCCTGGACTTCTC 120
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TCCTCCACCACGTTCACCATCGTTAACCAGTGTAACTACACCGTCTGGCCGGGACTTCTC 120
Query 121 TCCGGCGCCGGCACCACTCCATTACCAACCACCGGTTTCTCCCTCAGCTCGTCCGAGTCA 180
||||||||||||||| |||||||||| ||||| ||||||||||||| ||| | ||||||
Sbjct 121 TCCGGCGCCGGCACCGCTCCATTACCCACCACTGGTTTCTCCCTCAACTCCTTTGAGTCA 180
Query 181 CGACTCATCTCCATACCCGCCGCCTGGTCCGGCCGCATATGGGGACGCACGCTCTGCAAC 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CGACTCATCTCCATACCCGCCGCTTGGTCCGGCCGCATATGGGGACGCACGCTCTGCAAC 240
Query 241 CAAAACGAGAA-CACCGGAAAATTCACTTGCGTCACCGGCGACTGTGGCTCATCCCAAAT 299
|||||||| || |||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 241 CAAAACGA-AATCACCGGAATATTCACTTGCGTCACCGGCGACTGCGGCTCATCCCAAAT 299
Query 300 CGAATGCTCCGGAGCAGGAGCAATCCCTCCAGCTACATTAGCCGAGTTCACACTCAACGG 359
||||||||| || |||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 300 CGAATGCTCTGGCGCAGGAGCAATCCCTCCAGCTACACTAGCCGAATTCACACTCAACGG 359
Query 360 CGACGGAAACCTCGATTTCTTCGACGTCAGCCTCGTCGATGGCTACAACGTCCCAATGAC 419
|| || ||| || ||||||| |||||| |||||||||||||| |||||| ||||||||||
Sbjct 360 CGCCGAAAATCTAGATTTCTACGACGTTAGCCTCGTCGATGGTTACAACATCCCAATGAC 419
Query 420 GATCGTCCCTCACGGCGGAGCTATTGGAGTCGGTAAGTGTAACGCAACGGGTTGCGCGGT 479
|||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 GATCGTTCCTTACGGCGGAGCTATCGGAGTCGGTAAGTGTAACGCAACGGGTTGCGCGGC 479
Query 480 GGATCTTAACGGCGTATGTCCGGAACAGCTGAAAGTAACAGTTGAAGC-G--GGAACGGC 536
|||||| |||||| |||||||||| |||||||||||||| |||||||| | |||||||
Sbjct 480 GGATCTCAACGGCTTATGTCCGGAGCAGCTGAAAGTAACGGTTGAAGCGGCTGGAACGGG 539
Query 537 TGCTGTAGCGTGCAAGAGCGCTTGCGAGGCGTTTGGAACGCCGGAGTTTTGCTGTAGTGG 596
|||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 540 TGCTGTGGCGTGCAAGAGCGCTTGTGAGGCGTTTGGAACGCCGGAGTTTTGTTGTAACGG 599
Query 597 CGCGTTTGGAACGCCGGACACGTGTAAGCCGAGTGAGTACTCTGGTTTCTTCAAGAAAGC 656
||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| |
Sbjct 600 CGCGTTTGGAACGCCGGACACGTGTCAGCCGAGTGAGTACTCTGTTTTCTTTAAGAAAAC 659
Query 657 TTGTCCGACGGCTTATAGTTACGCTTACGACGACGGTACAAGCACTTTTACTTGCTCCGG 716
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 660 TTGTCCGACGGCTTATAGTTACGCTTATGACGACGGCACAAGCACTTTTACTTGCTCCGG 719
Query 717 TGCTGATTACGTCATCACTTTCTGTCCTTCTCCTTC 752
||||||||||||||||||||||||||||||||||||
Sbjct 720 TGCTGATTACGTCATCACTTTCTGTCCTTCTCCTTC 755
> AT4G36010.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr4:17039192-17041141 REVERSE LENGTH=1351
Length=1351
Score = 490 bits (265), Expect = 1e-137
Identities = 596/750 (79%), Gaps = 46/750 (6%)
Strand=Plus/Plus
Query 37 ATTC-TGTTTTTCATCAATGGTGGTTCCTCCACCACTTTCACCATCGTTAACCAGTGTAA 95
|||| || |||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 202 ATTCTTG-TTTTCATCTATGGAGTTTCCTCCACCACTTTCACCATCGTTAACCAGTGTAG 260
Query 96 CTACACCGTCTGGCCTGGACTTCTCTCCGGCGCCGGCACCACTCCATTACCAACCACCGG 155
|||||||||||||||||||||||||||||||||||| ||| |||| ||||| || |||||
Sbjct 261 CTACACCGTCTGGCCTGGACTTCTCTCCGGCGCCGGAACCTCTCCTTTACCTACAACCGG 320
Query 156 TTTCTCCCTCAGCTCGT-CCGAGTCACGACTCATCTCC-ATACCCGCCGCCTGGTCCGGC 213
|||||| | | | | | ||||| ||||| | ||| || || ||||| || ||||||||
Sbjct 321 ATTCTCCTTAAACCC-TACCGAGACACGAGTTATC-CCGATCCCCGCAGCTTGGTCCGGT 378
Query 214 CGCATATGGGGACGCACGCTCTGCA-ACCAAAACGAGAAC-ACCGGAAAATTCACTTGCG 271
|| || ||||| || || ||||||| || || ||| ||| ||||||| ||||||||||
Sbjct 379 CGTATTTGGGGTCGTACTCTCTGCACAC-AAGACGC-AACCACCGGAAGATTCACTTGCA 436
Query 272 TCACCGGCGACTGTGGCTCATCC-CAAATCGAATGCTCCGGAGCAGGAGCAATC-CCTCC 329
||||||| |||||||| || ||| | | |||||||||||| | || || | |||||
Sbjct 437 TCACCGGGGACTGTGGTTCTTCCACCG-TAGAATGCTCCGGATCCGGTGCTG-CACCTCC 494
Query 330 AGCTACATTAGCCGAGTTCACACTCAA-CGGCGACGGAAAC--CTCGATTTCTTCGACGT 386
|||||| | || || ||||| || || ||| | | || |||||||||| ||||||
Sbjct 495 GGCTACACTCGCTGAATTCAC-CTTAAACGGAG-CT-AATGGTCTCGATTTCTACGACGT 551
Query 387 CAGCCTCGTCGATGGCTACAACGTCCCAATGACGATCGTCCCTCACGGCGGAGCT-ATT- 444
||| |||||||| || |||||| |||| ||||| ||||||||||| || |||| ||
Sbjct 552 CAGTCTCGTCGACGGTTACAACATCCCGATGACCATCGTCCCTCAGGGTGGAGGAGATGC 611
Query 445 -GGAG---TCG--GTAAG-TGTAACG-CAACGGGTTGCGCGGTGGATCTTAACGG-CGTA 495
|||| ||| | || |||| || |||| || |||| | ||| || ||||| | |
Sbjct 612 CGGAGGCGTCGCCGGAAACTGTA-CGACAACCGGCTGCGTTGCGGAGCTCAACGGTCC-A 669
Query 496 TGTCCGGAACAGCTGAAAGTAACAGTTGAAGCGGGAACGGCTGCTGTAGCGTGCAAGAGC 555
||||| | ||||||||||| | | || ||||| | | | ||||| ||||| |||
Sbjct 670 TGTCCTGCTCAGCTGAAAGTGGC-GACGA--CGGGAGCTGAAGGAGTAGCTTGCAAAAGC 726
Query 556 GCTTGCGAGGCGTTTGGAACGCCGGAGTTTTGCTGTAGTGGCGCGTTTGGAACGCCGGAC 615
|| || || ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 727 GCGTGTGAAGCGTTTGGAACGCCGGAGTACTGCTGTAGCGGCGCGTTTGGAACGCCGGAC 786
Query 616 ACGTGTAAGCCGAGTGAGTACTCTG-GTTTCTTCAAGAAA-GCTTGTCCGACG-GCTTAT 672
||||||||||| || |||||||| |||| ||||| ||| || || |||| | ||||||
Sbjct 787 ACGTGTAAGCCAAGCGAGTACTCACAGTTT-TTCAA-AAACGCGTGCCCGA-GAGCTTAT 843
Query 673 AGTTACGCTTACGACGACGGTACAAGCACTTTTACTTGCTC-CGGTGCTGATTACGTCAT 731
|||||||||||||||||||| || || || || ||||| | ||| ||||||||||||||
Sbjct 844 AGTTACGCTTACGACGACGGAACTAGTACCTTCACTTG-TGGCGGAGCTGATTACGTCAT 902
Query 732 CACTTTCTGTCCTTCTCCTT-CCTCAAGTG 760
||||||||||||||||||| || ||||||
Sbjct 903 CACTTTCTGTCCTTCTCCTAACC-CAAGTG 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5