BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343446
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18193.1 | Symbols: | P-loop containing nucleoside triphosp... 435 3e-121
AT2G18190.1 | Symbols: | P-loop containing nucleoside triphosp... 311 6e-84
> AT2G18193.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:7917505-7919277
REVERSE LENGTH=1697
Length=1697
Score = 435 bits (235), Expect = 3e-121
Identities = 255/265 (96%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 325 GGTTTAGGATTTAGGACATTGGTCTCTAATTACCTTGGTTTAGATGGCATAAACCATCCT 384
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1228 GGTTTAGGATTTAGGACATTGGTCTCTAACTACCTTGGTTTAGATGGCTTAAACCATCCT 1287
Query 385 CTTTGCGAGGAAATCGAGGCGCTGATCGATTCTACTGAAGTTACTCCAGCTGAGTTAGCG 444
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1288 CTTTGCGAGGAAATCGAGGCGCTGGTCGATTCTACTGAAGTTACTCCAGCTGAGTTAGCT 1347
Query 445 GAAGAGCTGATGCAAGACGATGATACTGATGTTGTTCTTCGTGGAGTAGTTAGCTTTGTT 504
||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 1348 GAAGAGCTGATGCAAGACGATGATACTGACGTTGTTCTTCGTGGAGTAATAAGCTTTGTT 1407
Query 505 GAGAAGAGGAAGGTTGAGAGAAGCAAGACTAAGGAGGAGGTTTCTATTTGTAAAGCAATT 564
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1408 GAGAAGAGGAAGGTTGAGAGAAGCAAGACTAAGAAGGAGGTTTCTATTTGTAAAGCAACT 1467
Query 565 GATGATGACggaaaacagaatggtt 589
|||||||||| ||||||||||||||
Sbjct 1468 GATGATGACGAAAAACAGAATGGTT 1492
Score = 294 bits (159), Expect = 6e-79
Identities = 262/310 (85%), Gaps = 14/310 (5%)
Strand=Plus/Plus
Query 25 CGAGTCGGTAAGCTCCCTATGCAGAAGCACTTGACAATCTCGATCGAGAA-AGGCGAAGA 83
||||| |||||| |||| | |||||||| || |||||||| ||||| || |||||||||
Sbjct 373 CGAGTTGGTAAGATCCCAAAACAGAAGCATTTCACAATCTCTATCGA-AAGAGGCGAAGA 431
Query 84 GATCTTGGATACTTTCGACAAATCTGAGGTGAGATGGAGTT-TCGTTGAAACAGAGAACG 142
|||| | ||||||||||| | || ||||||| |||||||| | ||| || | |||||||
Sbjct 432 GATCCTCGATACTTTCGAGGAGTCGGAGGTGAAATGGAGTTAT-GTTCAATCGGAGAACG 490
Query 143 AGAAAACAGAGAAAGTGAAACGTTACTACGAGCTCACATTCGAGAAGAAGCTTAGAGACA 202
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 AGAAAGGAGATAAAGTGAAACGTTACTACGAGCTCACATTCGAGAAGAAGCTTAGAGACA 550
Query 203 AAGTCATGAACTCTTATTTAAACCATGTTTTAGCCCAAGGGGAGGAGATTAAGCAG-AAT 261
||||| ||||||||||||||| ||| ||| ||||| || |||||||| ||| || |||
Sbjct 551 AAGTCTTGAACTCTTATTTAACCCACGTTGTAGCCGAATCCGAGGAGATCAAG-AGGAAT 609
Query 262 CTGAGAGTGGTGAAGCTTTATAGCCGAGATGT-TG-G-TAG-GACCGATGACGACAGTGG 317
|||||||||||||||||||||||| ||||||| | | ||| || ||||| || |||
Sbjct 610 CTGAGAGTGGTGAAGCTTTATAGCAGAGATGTGTATGCTAGTGAT-GATGATGA---TGG 665
Query 318 AATGGCTGGT 327
||||||||||
Sbjct 666 AATGGCTGGT 675
> AT2G18190.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:7914305-7915872
REVERSE LENGTH=1485
Length=1485
Score = 311 bits (168), Expect = 6e-84
Identities = 240/273 (88%), Gaps = 12/273 (4%)
Strand=Plus/Plus
Query 325 GGTTTAGGATTTAGGACATTGGTCTCTAATTACCTTGGTTTAGATGGCATAAACCATCCT 384
|||||||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||
Sbjct 1147 GGTTTAGGGTTTAGGACATTGGTCTCTAATTACCTCGGTTTAGGTGGCTTAAACCATCCT 1206
Query 385 CTTTGCGAGGAAATCGAGGCGCTGATCGATTCTACTGAAGTTACTCCAGCTGAGTTAGCG 444
|||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||
Sbjct 1207 CTTTGCGAGGAAATCGAGGCGCTGATCGATTCCACTGAGGTGACTCCGGCTGAGTTAGCT 1266
Query 445 GAAGAGCTGATGCAAGACGATGATACTGATGTTGTTCTTCGTGGAGTAGTTAGCTTTGTT 504
|||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1267 GAAGAGTTGATGCAAGAAGATGATACTGATGTTGTCCTTCGTGGAGTAGTTAGCTTTGTT 1326
Query 505 GAGAAGAGGAAGGTTGAGAGAAGCAAGACTAAGGAG--G-A-GGTTTCTATTTGTA-AAG 559
||||| || ||||| |||| |||||| || |||||| | | |||| ||| ||||| ||
Sbjct 1327 GAGAATAGAAAGGTCGAGATAAGCAAAACCAAGGAGCTGGAAGGTT-CTACTTGTAGAA- 1384
Query 560 CAA-TTGATGATGACgga-aaacagaatggttt 590
|| |||||| ||||| | ||||| |||| |||
Sbjct 1385 -AACTTGATGGTGACG-ATAAACACAATG-TTT 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5