BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343472
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18440.1 | Symbols: GUT15 | GUT15 (GENE WITH UNSTABLE TRANSC... 224 7e-58
> AT2G18440.1 | Symbols: GUT15 | GUT15 (GENE WITH UNSTABLE TRANSCRIPT
15); other RNA | chr2:7995729-7997198 REVERSE LENGTH=1378
Length=1378
Score = 224 bits (121), Expect = 7e-58
Identities = 176/201 (88%), Gaps = 10/201 (5%)
Strand=Plus/Minus
Query 1 ATGACAAAAGATGCAATCAGGAAGCGATTAGCTATCCAACAAAACATCTTCTACACCCTA 60
||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 448 ATGAC-AGAGATGCAATCAGGAAGCTATTAGCTATCC-ACAAAACATCTTCTACACCCTA 391
Query 61 ATCTCAATTCAATCCAACACACACAGATCCGTCTGCAACAGATTGGCCTCCTTGTA-TCC 119
||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||| |||
Sbjct 390 ATCTCAATTCAATCCAACACACACACATCCGTCTGCAACAGATTCGTCTCCTAGTAATCC 331
Query 120 AGAA-TCGGACGCCTCAGC--GATCAATTCAAAGAATCTCGCATCTGAAGAAGCAGCAAA 176
|||| | | | |||||| | || ||||||| ||||||| |||| ||||||||| || ||
Sbjct 330 AGAAAT-G-ATGCCTCAACTTGAACAATTCACAGAATCTTGCATGTGAAGAAGCCGCGAA 273
Query 177 GGACGATCCA-AGGCTAGATC 196
|||||||||| | |||||||
Sbjct 272 GGACGATCCAGAT-CTAGATC 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5