BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343486
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18550.1 | Symbols: HB-2, ATHB21, HB21 | homeobox protein 21... 1042 0.0
> AT2G18550.1 | Symbols: HB-2, ATHB21, HB21 | homeobox protein
21 | chr2:8049663-8051213 REVERSE LENGTH=663
Length=663
Score = 1042 bits (564), Expect = 0.0
Identities = 631/664 (95%), Gaps = 2/664 (0%)
Strand=Plus/Plus
Query 1 ATGAATAACCAGAATGTAGATGATCATAATCTTCTACTCATTTCTCAGTTGTACCCTAAT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAATAACCAGAATGTAGATGATCATAATCTTCTACTCATTTCTCAATTGTACCCTAAT 60
Query 61 GTCTATACTCCATTAGTACCACAACAAGCAGGAGAAGCAAAACCAGCGCGGCGGAGGAAA 120
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 61 GTCTATACTCCATTAGTACCACAACAAGGAGGAGAAGCAAAACCAACACGGCGGAGGAAA 120
Query 121 AGGAAGAGCAAGAGTGTTGCGATGGCAGAGGAGGGTGGAGCCGGAGGCAATGGGTGGTTT 180
||||||||||||||||||| | ||||||||||||||| | || ||||||||||||||||
Sbjct 121 AGGAAGAGCAAGAGTGTTGTGGTGGCAGAGGAGGGTGAAAACGAAGGCAATGGGTGGTTT 180
Query 181 AGAAAGAGAAAATTGAGTGATGAGCAAGTAAGAATGTTGGAGATTAGCTTTGAAGATGAT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 AGAAAGAGAAAATTGAGTGATGAGCAAGTAAGAATGTTGGAGATTAGCTTTGAAGACGAT 240
Query 241 CAAAAGCTTGAATCGGAGAGGAAAGATCGGCTTGCTTCGGAGTTAGGGCTTGACCCTCGT 300
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 241 CATAAGCTTGAATCCGAGAGGAAAGATCGGCTTGCTTCTGAGTTAGGGCTTGATCCTCGT 300
Query 301 CAAGTCGCCGTCTGGTTCCAGAACCGCCGTGCACGGTTTAAGAACAAGA-GAGTTGAGGA 359
|||||||||||||||||||| |||||||||||||||| |||||||| | |||| |||||
Sbjct 301 CAAGTCGCCGTCTGGTTCCAAAACCGCCGTGCACGGTGGAAGAACAA-ACGAGTCGAGGA 359
Query 360 TGAATACACTAAAATCAAAAACGCATATGAAACCACCGTCGTTGAGAAGTGTCGTCTTGA 419
||||||||||||| |||| || ||||| |||||||||||||||||||| |||||||||||
Sbjct 360 TGAATACACTAAACTCAAGAATGCATACGAAACCACCGTCGTTGAGAAATGTCGTCTTGA 419
Query 420 TTCTGAGGTTCTTCACCTTAAGGAACAACTTTACGAGGCTGAAAGAGAGATCCAACGGCT 479
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTCTGAGGTTATTCACCTAAAGGAACAACTTTACGAGGCTGAAAGAGAGATCCAACGGCT 479
Query 480 TGCACAAAGAGTTGAAGGAACTTTAAGTAACAGTCCCATCTCATCCTTTGTGACCATTGA 539
|||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 480 TGCAAAAAGAGTTGAAGGAACTTTAAGTAACAGTCCTATCTCATCCTCTGTGACCATTGA 539
Query 540 AGCCAATCATACGACACCGTTTTTTGGAGATTACGACATCGGATTTGACGGTGAGGGTGA 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 AGCCAATCATACGACACCGTTTTTTGGAGATTACGACATCGGATTTGACGGTGAGGCTGA 599
Query 600 CGAGAACTTGCTCTACTCGCCAGATTACATTGATGGATTAGAATGGATGAGCCAATTTAT 659
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 CGAGAACTTGCTCTACTCGCCAGATTACATTGATGGATTAGACTGGATGAGCCAATTTAT 659
Query 660 GTAA 663
||||
Sbjct 660 GTAA 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5