BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg343491

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18600.1 | Symbols:  | Ubiquitin-conjugating enzyme family p...   876    0.0  


> AT2G18600.1 | Symbols:  | Ubiquitin-conjugating enzyme family 
protein | chr2:8073200-8074982 REVERSE LENGTH=846
Length=846

 Score =  876 bits (474),  Expect = 0.0
 Identities = 532/560 (95%), Gaps = 4/560 (1%)
 Strand=Plus/Plus

Query  1    ATGATTGGGTTATTCAAAGTGAAAGAGAAGCAAAGAGAAGAGTCTCAAAAT-ACTAACAG  59
            ||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| |
Sbjct  152  ATGATTGGGTTATTCAAAGTGAAAGAGAAGCAAAGAGAAGAGTCTCAAAGTAAC-AACGG  210

Query  60   AAGAGGAGCTTCTACTGTCAAGAAGCAATCTGCTGGTGAACTTCGTCTTCACAAAGATAT  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  211  AAGAGGAGCTTCTACTGTCAAGAAGCAATCTGCTGGTGAACTTCGTCTTCACAAAGATAT  270

Query  120  ATCGGAGCTGAACCTGCCAAAGTCTTGTAAGATATCCTTTCCGAACGGAAAGAATGACTT  179
            ||||||||||||| | |||||||||||||||||||| |||||||| || |||||||||||
Sbjct  271  ATCGGAGCTGAACTTACCAAAGTCTTGTAAGATATCTTTTCCGAATGGGAAGAATGACTT  330

Query  180  GATGAACTTTGAAGTAACCATTAAACCTGATGAAGGATATTACATGAATGGTAAATTTGT  239
            |||||| |||||||||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct  331  GATGAATTTTGAAGTAACCATTAAACCTGATGAAGGATATTACTTGAGTGGTAACTTTGT  390

Query  240  GTTCACATTCCAAGTCTCTAATGTGTATCCCCACGAAGCTCCCAAAGTGAAATGCAAGAC  299
            |||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct  391  GTTCTCATTCCAAGTCTCTAATATGTACCCCCACGAAGCTCCTAAAGTGAAATGCAAGAC  450

Query  300  CAAGGTGTATCATCCGAATATCGATCTAGAAGGAAACGTCTGTCTGAACATCTTGCGTGA  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  451  CAAGGTGTATCATCCGAATATCGATCTAGAAGGAAACGTCTGTCTGAACATCTTGCGTGA  510

Query  360  AGACTGGAAACCGGTTCTCAACATAAACACAGTTATCTACGGTCTTTTCCATCTCTTCAC  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  511  AGACTGGAAACCGGTTCTCAACATAAACACAGTTATCTACGGTCTTTTCCATCTCTTCAC  570

Query  420  GGAACCCAATTACGAGGATCCTCTGAACCATGACGCAGCAGCGGTGTTAAGGGATAACCC  479
            ||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||
Sbjct  571  GGAACCCAATTACGAGGATCCTCTGAACCATGAAGCAGCTGCAGTGTTGAGGGATAACCC  630

Query  480  AAAG-CTGTTCGAGAATAATGTCAAAAGGGCAATGATGGGTGGCCATGTTGGCGAAACCT  538
             ||| | ||||||| ||||||||| ||||||||||||||||||||| |||||| ||||||
Sbjct  631  GAAGAC-GTTCGAGTATAATGTCAGAAGGGCAATGATGGGTGGCCAAGTTGGCCAAACCT  689

Query  539  CATTTCCTCGCTGCATGTAG  558
            ||||||||||||||||||||
Sbjct  690  CATTTCCTCGCTGCATGTAG  709



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26774800351


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5