BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg343509

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22180.1 | Symbols:  | DHHC-type zinc finger family protein ...   287    8e-77
  AT3G01020.1 | Symbols: ISU2, ATISU2 | ISCU-like 2 | chr3:5104-6...   134    1e-30


> AT3G22180.1 | Symbols:  | DHHC-type zinc finger family protein 
| chr3:7827036-7830813 FORWARD LENGTH=2580
Length=2580

 Score =  287 bits (155),  Expect = 8e-77
 Identities = 184/197 (93%), Gaps = 5/197 (3%)
 Strand=Plus/Plus

Query  105  CTC-TCGGGTGATTGCAATTACGTACGGTGTTTTGCTTGTTGGTGGTCGCTTTCTATGCT  163
            ||| || ||||||||||| |   |||||||||||||||||||||||||||||||||||||
Sbjct  192  CTCTTCAGGTGATTGCAA-T---TACGGTGTTTTGCTTGTTGGTGGTCGCTTTCTATGCT  247

Query  164  TTCTTCGCTCCTTTTGTTGGAGGTCGTATTTGGGAATACGTTTTGATCGGTGTTTACTCT  223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  248  TTCTTCGCTCCTTTTGTTGGAGGTCGTATTTGGGAATACGTTTTGATCGGTGTTTACTCT  307

Query  224  CATGTGGCTATTCTTGTATTTGTTTTGTATGTTCGGTGTACTGCACTCAAGCCTGCGGAT  283
            |  |||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct  308  CCCGTGGCTATTCTTGTGTTTGTTTTGTATGTTCGGTGTACTGCAATCAATCCTGCGGAT  367

Query  284  CCAAGGATCATGTCGAT  300
            || || |||||||||||
Sbjct  368  CCGAGAATCATGTCGAT  384


 Score = 84.2 bits (45),  Expect = 1e-15
 Identities = 45/45 (100%), Gaps = 0/45 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGAGGAAACACGGTTGGCAACTTCCCGCTCACACTCTTCAG  45
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  155  ATGGTGAGGAAACACGGTTGGCAACTTCCCGCTCACACTCTTCAG  199


 Score = 82.4 bits (44),  Expect = 4e-15
 Identities = 57/63 (90%), Gaps = 1/63 (2%)
 Strand=Plus/Plus

Query  299   ATGTTGTGGCAATGAGAGCCATGAGCGAGACGCTAGATGGACCATCTGTTGATGAGAAGA  358
             ||||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||| | |
Sbjct  1065  ATGTTGTGGCAATGAGAGCCATGAGCGAGGCGCCAGATGGAGCATCTGTTGACGAGGA-A  1123

Query  359   ATT  361
             |||
Sbjct  1124  ATT  1126


> AT3G01020.1 | Symbols: ISU2, ATISU2 | ISCU-like 2 | chr3:5104-6049 
FORWARD LENGTH=683
Length=683

 Score =  134 bits (72),  Expect = 1e-30
 Identities = 76/78 (97%), Gaps = 0/78 (0%)
 Strand=Plus/Plus

Query  436  CATTGCAGTATGCTTGCAGAGGACGCTATCAAGTCTGCGGTCAGAGACTACAAGGAGAAG  495
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  420  CATTGCAGTATGCTTGCAGAGGACGCTATCAAGTCCGCGGTCAGAGACTACAAGGAGAAG  479

Query  496  CAAGCAAAGGCTAATGCT  513
            ||||||||| ||||||||
Sbjct  480  CAAGCAAAGACTAATGCT  497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24966371059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5