BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343514
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16120.1 | Symbols: PMT1, ATPMT1 | polyol/monosaccharide tra... 2266 0.0
AT2G16130.1 | Symbols: PMT2, ATPMT2 | polyol/monosaccharide tra... 2067 0.0
> AT2G16120.1 | Symbols: PMT1, ATPMT1 | polyol/monosaccharide transporter
1 | chr2:6996727-6998441 REVERSE LENGTH=1536
Length=1536
Score = 2266 bits (1227), Expect = 0.0
Identities = 1436/1539 (93%), Gaps = 6/1539 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCCTTGGGAGTAGAACAAGGTGTTGTGATTGCAGATTCCGAGCCACCGAGGGGG 60
|||| ||||| |||||| |||||||||||||||||||| || || |||||||||||||||
Sbjct 1 ATGAATTCCTCGGGAGTTGAACAAGGTGTTGTGATTGCGGAGTCAGAGCCACCGAGGGGG 60
Query 61 AATAGAAGCCGATATGCTTTTGCTTGTGCAATTTTAGCCTCCATGACTTCTATCATCCTT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AATAGAAGCCGATATGCTTTTGCTTGTGCAATCTTAGCCTCCATGACTTCTATCATCCTT 120
Query 121 GGTTACGATATTGGAGTAATGAGTGGAGCTGCGATTTTCATAAAAGACGATTTGAAACTG 180
|||||||| |||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 121 GGTTACGACATTGGAGTGATGAGTGGAGCTTCAATTTTCATAAAAGACGATTTGAAACTG 180
Query 181 TCGGATGTACAACTTGAGATTCTTATGGGAATTTTAAACATCTACTCTCTGATTGGTTCC 240
|| |||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 181 TCTGATGTACAACTTGAGATTCTTATGGGAATTCTAAACATCTACTCTCTGGTCGGTTCC 240
Query 241 GGTGCGGCCGGTAGAACTTCTGATTGGATTGGAAGACGGT-TCACCATAGTGTTGGCAGG 299
|| || || |||||||||||||||||| | |||||||| | | || ||||||||||||||
Sbjct 241 GGCGCAGCTGGTAGAACTTCTGATTGGCTCGGAAGACGATAT-ACAATAGTGTTGGCAGG 299
Query 300 AGCCTTCTTCTTTTGCGGTGCCCTTCTCATGGGTTTTGCCACAAACTACCCTTTCATTAT 359
|||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 300 AGCCTTCTTCTTTTGCGGAGCCCTACTAATGGGCTTTGCCACAAACTACCCTTTCATAAT 359
Query 360 GGTTGGCCGTTTTGTAGCCGGTATCGGTGTCGGTTATGCTATGATGATTGCGCCTGTTTA 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GGTTGGCCGTTTTGTAGCCGGTATCGGTGTTGGTTATGCTATGATGATTGCGCCTGTTTA 419
Query 420 CACCGCAGAAGTCGCTCCTGCCTCTTCTCGCGGCTTCCTCAGCTCTTTCCCTGAGATATT 479
|||||| ||||||||||| |||||||| || |||||||| | ||||||||||||||| ||
Sbjct 420 CACCGCTGAAGTCGCTCCCGCCTCTTCCCGAGGCTTCCTTACCTCTTTCCCTGAGATTTT 479
Query 480 TATCAATATTGGTATACTTTTGGGATACGTATCAAATTACTTTTTCTCCAAGCTTCCCGA 539
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 480 TATCAATATTGGTATACTTTTGGGATACGTATCCAATTACTTCTTCTCCAAGCTTCCCGA 539
Query 540 GCACCTTGGATGGAGGTTCATGTTAGGGGTTGGAGCGGTTCCCTCGGTGTTCCTAGCCAT 599
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 540 GCACCTCGGATGGAGGTTCATGTTAGGTGTAGGAGCGGTTCCCTCGGTGTTCCTAGCCAT 599
Query 600 CGGAGTGTTGGCAATGCCGGAGTCCCCAAGATGGCTCGTCCTCCAAGGTCGTCTCGGTGA 659
||||||||||||||||||||||| || | ||||||||||| || ||||||||||| ||
Sbjct 600 TGGAGTGTTGGCAATGCCGGAGTCTCCTCGGTGGCTCGTCCTTCAGGGTCGTCTCGGGGA 659
Query 660 TGCTTTTAAAGTCCTTGACAAAACCTCAAACACTAAAGAAGAAGCCATCACGAGGCTCGA 719
||||||||||||||||||||||||||| ||||| ||||||||||| ||| | ||||||||
Sbjct 660 TGCTTTTAAAGTCCTTGACAAAACCTCCAACACCAAAGAAGAAGCTATCTCTAGGCTCGA 719
Query 720 TGACATCAAACGCGCGGCTGGAATCCCCGATGATATGACAGACGATGTTATAGTCGTGCC 779
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TGACATCAAACGCGCAGTTGGAATCCCCGATGATATGACAGACGATGTTATAGTCGTTCC 779
Query 780 GAACAAGAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTCCGACCAACCCCGTC 839
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 GAATAAAAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTTCGACCAACCCCGTC 839
Query 840 CGTTCGACACATTCTCATAGCATGCCTTGGCATCCATTTCGCCCAGCAAGCCTCCGGAAT 899
|||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 840 CGTTCGACACATCCTCATAGCATGCCTTGGTATTCATTTCGCCCAGCAAGCCTCTGGAAT 899
Query 900 TGATGCGGTTGTGCTTTACTCTCCGACCATCTTCTCAAGGGCTGGACTGAAGTCCAAGAA 959
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 900 TGATGCGGTTGTGCTTTACTCTCCGACAATCTTCTCAAAGGCTGGACTGAAGTCCAAGAA 959
Query 960 TGATCAGCTCTTGGCAACGGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTGGTAGG 1019
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGACCAGCTCTTGGCTACGGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTGGTAGG 1019
Query 1020 AACTTGTGTGGTGGACCGGTTTGGACGTCGTGCCTTGTTGCTTACGAGTATGGGTGGAAT 1079
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1020 GACTTGTGTGGTGGATCGGTTCGGACGTCGTGCCTTGTTGCTTACGAGTATGGGCGGAAT 1079
Query 1080 GTTTCTTTCCTTGACCGCTCTCGGAACTAGTCTTACCGTGATCGACAGGAA-CCCGGGCC 1138
|||||||||||||||||| || ||||||||||| || |||||| ||||||| |||||| |
Sbjct 1080 GTTTCTTTCCTTGACCGCACTTGGAACTAGTCTCACGGTGATCAACAGGAACCCCGGG-C 1138
Query 1139 AAACGA-TCAAGTGGGCCATAGGGCTAGCCGTTACGACAGTGATGACGTTTGTGGCAACT 1197
|||| | |||||||||| |||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1139 AAAC-ACTCAAGTGGGCTATAGGGCTCGCCGTTACGACGGTGATGACTTTTGTGGCAACA 1197
Query 1198 TTCTCAATAGGTGCAGGCCCGGTGACGTGGGTTTACTGCTCAGAGATATTCCCTGTGAGG 1257
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1198 TTCTCAATAGGTGCAGGCCCCGTGACGTGGGTCTACTGCTCAGAGATATTCCCTGTGAGG 1257
Query 1258 CTAAGAGCTCAAGGGGCAAGTTTAGGAGTGATGTTGAATAGACTAATGAGTGGTATTATA 1317
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTAAGAGCTCAAGGGGCAAGTTTAGGAGTGATGTTGAATAGACTAATGAGTGGTATTATT 1317
Query 1318 GGAATGACATTCCTATCTCTCTCTAAAGGTCTCACCATTGGTGGTGCGTTCCTTCTCTTC 1377
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||
Sbjct 1318 GGAATGACATTCCTATCTCTTTCTAAAGGTCTCACCATCGGCGGTGCGTTCCTTCTATTC 1377
Query 1378 GCCGGAGTTGCAGCTGCCGCATGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTGGT 1437
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GCCGGAGTTGCTGCCGCCGCATGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTGGT 1437
Query 1438 ATGCCTCTAGAGGAGATGGAGAGTCTCTTCGGGAGCTACACCGCAAACAAAAAGAAGAAT 1497
|| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||
Sbjct 1438 ATACCTCTAGAGGAGATGGAGACTCTCTTCGGGAGCTACACCGCAAACAAGAAGAATAAT 1497
Query 1498 TCTGTGAGCAAAGACAATGAAATTGTGGATGAACAATGA 1536
||| ||||||||||||||||| ||||||||| |||||||
Sbjct 1498 TCTATGAGCAAAGACAATGAAGTTGTGGATGGACAATGA 1536
> AT2G16130.1 | Symbols: PMT2, ATPMT2 | polyol/monosaccharide transporter
2 | chr2:7002322-7004043 FORWARD LENGTH=1536
Length=1536
Score = 2067 bits (1119), Expect = 0.0
Identities = 1403/1542 (91%), Gaps = 12/1542 (1%)
Strand=Plus/Plus
Query 1 ATGAGTTCCTTGGGAGTAGAACAAGGTGTTG-TGATTGCAGATTCCGAGCCACCGAGGGG 59
|||||||||| |||| ||||| |||||||| || |||| || |||||||| || || ||
Sbjct 1 ATGAGTTCCTCAGGAGAAGAACGAGGTGTTGTTG-TTGCCGAGTCCGAGCCGCCAAGAGG 59
Query 60 GAATAGAAGCCGATATGCTTTTGCTTGTGCAATTTTAGCCTCCATGACTTCTATCATCCT 119
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 GAATAGAAGCCGATTTGCTTTTGCTTGTGCAATCTTAGCCTCCATGACTTCTATCATCCT 119
Query 120 TGGTTACGATATTGGAGTAATGAGTGGAGCTGCGATTTTCATAAAAGACGATTTGAAACT 179
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 120 TGGTTATGATATTGGAGTGATGAGTGGAGCTGCAATTTTCATAAAAGACGATTTGAAGCT 179
Query 180 GTCGGATGTACAACTTGAGATTCTTATGGGAATTTTAAACATCTACTCTCTGATTGGTTC 239
|||||| ||||||||||||||||||||||||||| |||| ||||| |||||||| |||||
Sbjct 180 GTCGGACGTACAACTTGAGATTCTTATGGGAATTCTAAATATCTATTCTCTGATCGGTTC 239
Query 240 CGGTGCGGCCGGTAGAACTTCTGATTGGATTGGAAGACGGT-TCACCATAGTGTTGGCAG 298
|| || || || |||||||| |||||||| |||||||| | | ||||||||||||||||
Sbjct 240 AGGAGCAGCTGGAAGAACTTCCGATTGGATCGGAAGACGATAT-ACCATAGTGTTGGCAG 298
Query 299 GAGCCTTCTTCTTTTGCGGTGCCCTTCTCATGGGTTTTGCCACAAACTACCCTTTCATTA 358
|| |||||||||||| || ||||| || |||||||||||||| ||||| ||||||||||
Sbjct 299 GATTCTTCTTCTTTTGTGGAGCCCTACTAATGGGTTTTGCCACTAACTATCCTTTCATTA 358
Query 359 TGGTTGGCCGTTTTGTAGCCGGTATCGGTGTCGGTTATGCTATGATGATTGCGCCTGTTT 418
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 TGGTCGGCCGTTTTGTAGCCGGTATCGGTGTCGGTTACGCTATGATGATTGCGCCTGTTT 418
Query 419 ACACCGCAGAAGTCGCTCCTGCCTCTTCTCGCGGCTTCCTCAGCTCTTTCCCTGAGATAT 478
| ||| | ||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 419 ATACCACGGAAGTCGCTCCAGCCTCTTCTCGAGGCTTCCTTAGCTCTTTCCCTGAGATAT 478
Query 479 TTATCAATATTGGTATACTTTTGGGATACGTATCAAATTACTTTTTCTCCAAGCTTCCCG 538
||||||| ||||||||||| |||||||||||||| |||||||| ||| |||||||||| |
Sbjct 479 TTATCAACATTGGTATACTATTGGGATACGTATCCAATTACTTCTTCGCCAAGCTTCCAG 538
Query 539 AGCACCTTGGATGGAGGTTCATGTTAGGGGTTGGAGCGGTTCCCTCGGTGTTCCTAGCCA 598
||||| |||||||||||||||||||||| ||||||| || ||||| ||||| |||||||
Sbjct 539 AGCACATTGGATGGAGGTTCATGTTAGGTATTGGAGCTGTGCCCTCAGTGTTTCTAGCCA 598
Query 599 TCGGAGTGTTGGCAATGCCGGAGTCCCCAAGATGGCTCGTCCTCCAAGGTCGTCTCGGTG 658
| ||||||||||||||||| ||||| ||| | ||||||||| | || |||||||| || |
Sbjct 599 TTGGAGTGTTGGCAATGCCCGAGTCTCCACGGTGGCTCGTCATGCAGGGTCGTCTAGGGG 658
Query 659 ATGCTTTTAAAGTCCTTGACAAAACCTCAAACACTAAAGAAGAAGCCATCACGAGGCTCG 718
| |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 659 ACGCTTTTAAAGTCCTTGACAAAACCTCAAACACCAAAGAAGAAGCCATCTCAAGGCTCA 718
Query 719 ATGACATCAAACGCGCGGCTGGAATCCCCGATGATATGACAGACGATGTTATAGTCGTGC 778
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 ATGACATCAAACGCGCAGTTGGAATCCCCGATGATATGACAGACGATGTTATAGTCGTTC 778
Query 779 CGAACAAGAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTCCGACCAACCCCGT 838
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 CGAATAAAAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTTCGACCAACCCCGT 838
Query 839 CCGTTCGACACATTCTCATAGCATGCCTTGGCATCCATTTCGCCCAGCAAGCCTCCGGAA 898
||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 839 CCGTTCGACACATCCTCATAGCATGCCTTGGTATCCATTTCTCCCAGCAAGCCTCCGGAA 898
Query 899 TTGATGCGGTTGTGCTTTACTCTCCGACCATCTTCTCAAGGGCTGGACTGAAGTCCAAGA 958
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTGATGCTGTCGTGCTTTACTCTCCGACCATCTTCTCAAGGGCTGGACTGAAGTCCAAGA 958
Query 959 ATGATCAGCTCTTGGCAACGGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTGGTAG 1018
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 ATGACCAGCTCTTGGCTACGGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTAGTAG 1018
Query 1019 GAACTTGTGTGGTGGACCGGTTTGGACGTCGTGCCTTGTTGCTTACGAGTATGGGTGGAA 1078
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GAACTTGTTTGGTGGACCGGTTTGGACGTCGTGCCTTGTTGCTTACGAGTATGGGTGGAA 1078
Query 1079 TGTTTCTTTCCTTGACCGCTCTCGGAACTAGTCTTACCGTGATCGACAGGAACCC-GGGC 1137
||||| ||||||||||||| || ||||||||||| || ||||||||||||||||| ||||
Sbjct 1079 TGTTTTTTTCCTTGACCGCCCTTGGAACTAGTCTCACGGTGATCGACAGGAACCCCGGGC 1138
Query 1138 CAAACGA-TCAAGTGGGCCATAGGGCTAGCCGTTACGACAGTGATGACGTTTGTGGCAAC 1196
|||| | |||||||||| |||||||| ||||||||||| |||||||| ||||| |||||
Sbjct 1139 -AAAC-ACTCAAGTGGGCTATAGGGCTCGCCGTTACGACGGTGATGACTTTTGTCGCAAC 1196
Query 1197 TTTCTCAATAGGTGCAGGCCCGGTGACGTGGGTTTACTGC-TCAGAGATATTCCCTGTGA 1255
|||||| ||||||||||||| ||||||||||| ||| || |||||||||||||| ||||
Sbjct 1197 ATTCTCATTAGGTGCAGGCCCCGTGACGTGGGTCTAC-GCCTCAGAGATATTCCCCGTGA 1255
Query 1256 GGCTAAGAGCTCAAGGGGCAAGTTTAGGAGTGATGTTGAATAGACTAATGAGTGGTATTA 1315
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1256 GGCTAAGAGCGCAAGGAGCAAGTTTGGGAGTGATGTTGAATAGACTAATGAGTGGTATTA 1315
Query 1316 TAGGAATGACATTCCTATCTCTCTCTAAAGGTCTCACCATTGGTGGTGCGTTCCTTCTCT 1375
|||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||
Sbjct 1316 TAGGAATGACATTCCTATCTCTTTCTAAGGGTCTCACCATCGGTGGTGCATTCCTTCTCT 1375
Query 1376 TCGCCGGAGTTGCAGCTGCCGCATGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTG 1435
||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1376 TCGCCGGAGTTGCGGTTGCCGCGTGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTG 1435
Query 1436 GTATGCCTCTAGAGGAGATGGAGAGTCTCTTCGGGAGCTACACCGCAAACAAAAAGAAGA 1495
|| ||||| |||| || || |||||||||||||||||||||| ||||||||||||||| |
Sbjct 1436 GTGTGCCTTTAGAAGAAATAGAGAGTCTCTTCGGGAGCTACAGCGCAAACAAAAAGAACA 1495
Query 1496 AT-TCTGTGAGCAAAGACAATGAAATTGTGGATGAACAATGA 1536
|| | | ||||||||| || || | || ||||||||||||
Sbjct 1496 ATGT-TATGAGCAAAGGGAAACAAGTAGTTGATGAACAATGA 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75802822950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5