BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343537
Length=2448
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containi... 2747 0.0
> AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
protein / helicase domain-containing protein | chr2:7097280-7101261
FORWARD LENGTH=3104
Length=3104
Score = 2747 bits (1487), Expect = 0.0
Identities = 1850/2017 (92%), Gaps = 58/2017 (3%)
Strand=Plus/Plus
Query 190 GGGTACTACAAGAATGTGCATAAAAGAAAGCAAAATCAAGTTGATGATGGACTTTGTTCC 249
|||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 386 GGGTACTATAAGAATGTGCATAAAAGAAAGCAAAATCAAGTTGATGATGGA--------C 437
Query 250 GATTCTGAAGCAAAGCGGTTAAAGAGTTCATCCAAAGTGATTGATTACTCTAACCCATTT 309
|||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||
Sbjct 438 ----CTGAAGCAAAGCGGGTCAAGAGTTCAGCCAAAGTTATTGATTACTCTAACCCATTT 493
Query 310 GCAATTAGTAACATGCTTGAAGCATTAGATGGTGGTAAATTTGGGAGTGTTACTAAAGAG 369
||| ||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||
Sbjct 494 GCAGTTAGTAACATGCTTGAAGCTTTAGATAGTGGTAAATTTGGGAGTGTTAGTAAAGAG 553
Query 370 TTGCAAGAGATAGCTGATATGAGGATGGATTTGGTTAAGCGTTGTATTTGGTTATATCCA 429
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 554 TTGGAAGAGATAGCTGATATGAGGATGGATTTGGTTAAGCGTTCTATTTGGTTATACCCG 613
Query 430 TCGTTAGCGTATACCGAGTTTGAAGATGAGAAGACGATGATGAGTTTCGATAATCAACAG 489
||| |||||||||||| |||||||| ||||||||| ||| | ||||||||||||
Sbjct 614 TCGCTAGCGTATACCGTGTTTGAAGCTGAGAAGAC---GAT--G----GATAATCAACAG 664
Query 490 GTTGTGGAAGGTGGTGTTATTAATTTGgatgatgatgatgatgatgatga-tgatgTTTC 548
||||||||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 665 GTTGTGGAA---GGTGTTATTAATTTGGATGATGATGATGATGATGAT-ACTGATGTGGA 720
Query 549 GAATAAAGCTATTTGTGTTGTTCC-T--TCGTCTGAGATTGTGGTTATTGATTCTGATGA 605
||| |||||| | ||||||||||| | ||||||||||||||| || |||||||||||||
Sbjct 721 GAAGAAAGCTCTCTGTGTTGTTCCTTCGTCGTCTGAGATTGTGCTTCTTGATTCTGATGA 780
Query 606 TGAAGACAATGAGAGGCAGAGGTCTACGTATCAGTTTCAGTCTACTCTTGTACAGCTTCA 665
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct 781 TGAAGACAATGAGAGGCAGAGGCCTATGTATCAGTTTCAGTCTACTCTTGTACAGCATCA 840
Query 666 GAAGAATCAAGGGGATGTGACTCCAGTAACACCGCAATTCACTTTTGAGGAGGTCGATTT 725
||||||||||||||||||||||||| ||| |||||||| | |||| ||||||||||||||
Sbjct 841 GAAGAATCAAGGGGATGTGACTCCATTAATACCGCAATGCTCTTTCGAGGAGGTCGATTT 900
Query 726 AGGGAGGAGCAAGGAGATGATGCCTTCTGTAATTAAGGCCATGGTGGAGGGACAAACAAG 785
||||||| |||| | || ||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 901 AGGGAGGGGCAA-G-GA-GATGCCTTCTGCCATTAAAGCCATTGTTGAGGGACAAACAAG 957
Query 786 TAGAGGCAAAGTTGTTGCC-ATAGAAAATGGTGTGGCTAACGA-AAAGGGTGTCTACGTG 843
|||||||||||| || || |||||||||||||||| ||| || ||| ||||||||||||
Sbjct 958 TAGAGGCAAAGTCCTT-CCTATAGAAAATGGTGTGGTTAATGAGAAA-GGTGTCTACGTG 1015
Query 844 GGGGTTGAGGAGGATGACAGTGATAATGAGTCTGAAGCAGCAGATGAAGATCTTGGTAAT 903
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GGCGTTGAGGAGGATGACAGTGATAATGAGTCTGAAGCAGCAGATGAAGATCTTGGTAAT 1075
Query 904 ATCTGGAATGAAATGGCCATGTCAATAGAGTGTTCCAAGGATATAGCATGGGAGACTTCG 963
|||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1076 ATCTGGAATGAAATGGCCTTGTCAATAGAGTGTTCCAAGGATGTAGCAAGGGAGACTTCA 1135
Query 964 CATAAGCAAAAGGCAGATGTAGTGGAAGACTGTGAGCACTCATTCATTCTAAAGGATGAT 1023
|||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 1136 CATAAGGAAAAGGCAGATGTAGTGGAAGATTGTGAGCACTCATTTATTCTAAAGGACGAT 1195
Query 1024 ATGGGTTATGTTTGCCGTGTCTGCGGAGTTATTGAGAAAAGTATACTAGAGATAATTGAT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ATGGGTTATGTTTGCCGTGTCTGCGGAGTTATTGAGAAAAGTATACTAGAGATAATTGAT 1255
Query 1084 GTGCAATTCACTAAAGCAAAACGAAACACAAGAACATATGCCTCTGAAACTAGAAATAAA 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1256 GTGCAATTCACTAAAGCAAAACGAAACACAAGAACATATGCCTCTGAAACTAGAACTAAA 1315
Query 1144 AGGTTTGGCGAATCTGATGCTGAACTTAAGTTTTCTGAAGAAGGGCTT-ATGATAGGTGG 1202
|||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 1316 AGGTTTGGCGAATCTGATAATGAACTTAAGTTTTCTGAAGAAGGG-TTGATGATAGGTGG 1374
Query 1203 ACTTGCTGCTCATCCAACGCATGCTGAC-AACATGAAGCCTCATCAAATTGAGGGATTCC 1261
|||||||||||||||||||||||||| | || |||||||||||||||||||||||||| |
Sbjct 1375 ACTTGCTGCTCATCCAACGCATGCTGCCGAA-ATGAAGCCTCATCAAATTGAGGGATTTC 1433
Query 1262 AGTTCCTTTGCAGCAATTTAGTGGCAGATGATCCTGGTGGTTGTATCATGGCTCATGCTC 1321
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1434 AGTTCCTTTGCAGCAATTTAGTGGCTGACGATCCTGGTGGCTGTATCATGGCTCATGCTC 1493
Query 1322 CAGGTTCTGGAAAAACCTTCATGATCATCAGTTTTATGCAGAGCTTCCTTGCTAAGTATC 1381
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1494 CAGGCTCTGGAAAAACCTTCATGATCATCAGTTTTATGCAGAGCTTTCTTGCAAAGTATC 1553
Query 1382 CTCAGGCTAAGCCACTGGTTGTGCTTCCAAAGGGGATTTTGTCTACTTGGAAAAAAGAGT 1441
|||||||||||||| ||||||| || ||||| || ||| || ||||||||||||||||||
Sbjct 1554 CTCAGGCTAAGCCATTGGTTGTTCTCCCAAAAGGTATTCTGCCTACTTGGAAAAAAGAGT 1613
Query 1442 TCCTTAGATGGCAAGTTGAGGACATACCACTGCTTGATTTCTACAGTGCTAGAGCAGAAA 1501
|| | |||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct 1614 TCGTGAGATGGCAAGTTGAGGACATACCACTGCTTGATTTCTATAGTGCTAAAGCAGAGA 1673
Query 1502 ACCGAGCACAGCAGCTGGCTATCTTGAGAAAA-TGGATGGAGAAGAAGAGTATCTTATTT 1560
|||| |||||||||||| |||| |||| || | |||||||||||||||||||||||||||
Sbjct 1674 ACCGGGCACAGCAGCTGTCTATTTTGA-AACAGTGGATGGAGAAGAAGAGTATCTTATTT 1732
Query 1561 CTTGGGTACAAGCAGTTCTCAACTATTGTGTGTGATGATACAAGTACCGACTCACTTTCT 1620
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1733 CTTGGGTACCAGCAGTTCTCAACTATTGTGTGTGATGATACAA---CCGACTCACTTTCT 1789
Query 1621 TGCCAGGAGATACTGCTCAAAGTACCTTCGATCCTCATTTTGGATGAAGGACACACTCCA 1680
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1790 TGCCAGGAGATACTGCTCAAGGTACCTTCGATCCTCATTTTGGATGAAGGACACACTCCA 1849
Query 1681 AGGAATGAGGACACAAATGTATTGCAGTCCCTTGCCCAAGTCCAAACACCAAGAAAAGTT 1740
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1850 AGGAATGAGGACACAAATTTATTGCAGTCACTTGCCCAAGTCCAAACACCAAGAAAAGTT 1909
Query 1741 GTCCTCTCAGGAACGCTTTATCAGAACCATGTAAAGGAGGTTTTCAACATTTTGAACCTC 1800
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1910 GTCCTCTCAGGAACGCTTTATCAGAACCATGTAAAGGAGGTTTTCAACATTCTGAACCTT 1969
Query 1801 GTTCGACCCAAATTCCTCAAACTGGATACCTCCAAGTCTA-TCGTGAAGAGGATATTGAG 1859
||||||||||||||||||||| ||||||||||||| ||| | |||||||| || ||| |
Sbjct 1970 GTTCGACCCAAATTCCTCAAATTGGATACCTCCAAATCTGCT-GTGAAGAGAATCTTG-G 2027
Query 1860 -TTATGCTCCTATATCTGATGTAAGGTC-ACA-T-A-TGGGAAACAATTCAGATGTGTCT 1914
|||| |||| || | ||||| ||| | | | | ||| || ||||||||| || ||
Sbjct 2028 CTTATACTCC-ATG-C-GATGTCAGGGGGAGACTTACTGG-AAGTAATTCAGATATGGCT 2083
Query 1915 TCGGCCTTCAATGAAATTGTGGAGTACACACTGCAGAAGAGCGAGGATTTCACGGTGAAA 1974
|| |||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 2084 TCAATGTTCAATGAAACTGTGGAGCACACCCTGCAGAAGAGCGAGGATTTCACAGTGAAA 2143
Query 1975 ATTAATGTAATCCAAGATTTGCGGGAGATGACAAAGAAAGTGCTTCATTACTATAAAGGA 2034
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144 ATTAAAGTAATCCAAGATTTGCGGGAGATGACAAAGAAAGTGCTTCATTACTATAAAGGA 2203
Query 2035 GATTTCCTAGATGAGCTTCCTGGACTTGCTGATTTCACTGTGGTTCTTAATCTGTCTCCA 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 GATTTCCTAGATGAGCTTCCTGGACTTGCTGATTTCACTGTGGTTCTTAATCTGTCTCCA 2263
Query 2095 AGGCAGTTGAACGAAGTGAAGAAGTTAAGACGTGAGAAGAGAAAATTTAAGGTTTCGGCT 2154
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2264 AAGCAGTTGAACGAAGTGAAGAAGTTAAGACGTGAGAAGAGAAAATTTAAGGTTTCGGCT 2323
Query 2155 GTGGGAAGTGCAATTTACCTTCACCGCGAAGCTGAAA 2191
||||||||||||||||||||||||| |||||||||||
Sbjct 2324 GTGGGAAGTGCAATTTACCTTCACC-CGAAGCTGAAA 2359
Score = 372 bits (201), Expect = 1e-101
Identities = 236/253 (93%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 2197 GGGCGGGCTTTTCGACCCGGACAAACA-AAGAAGGTGCATGCATACAGATTGATTGCTGG 2255
||||| || |||||||||||||||| | |||| |||||||||||| ||||||||||||||
Sbjct 2774 GGGCGAGCGTTTCGACCCGGACAAA-AGAAGATGGTGCATGCATATAGATTGATTGCTGG 2832
Query 2256 GTCATCACCTGAGGAGGAGGATCACAACACTTGCTTCAAAAAGGAAGTCATCTCAAAGAT 2315
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2833 GTCATCACCTGAGGAAGAGGATCACAACACTTGTTTCAAAAAGGAAGTCATCTCAAAGAT 2892
Query 2316 GTGGTTCGAGTGGAACGAGTACTGCGGATACCGAAACTTTGAGGTAGAGACAATTGATGT 2375
|||||||||||||||||||||||||||||| | |||||||||||||||||| || |||||
Sbjct 2893 GTGGTTCGAGTGGAACGAGTACTGCGGATATCAAAACTTTGAGGTAGAGACGATCGATGT 2952
Query 2376 GGATGATGCTGATGATATGTTCCTTGAAAGTCCTACCTTAAGAGAAGACATAAGAGTTCT 2435
|||||| |||| ||||| |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 2953 GGATGAAGCTGGTGATACGTTCCTCGAAAGTCCTGCCTTAAGAGAAGACATAAGAGTTCT 3012
Query 2436 CTACAAAAGGTAA 2448
|||||||||||||
Sbjct 3013 CTACAAAAGGTAA 3025
Score = 89.8 bits (48), Expect = 1e-16
Identities = 130/166 (78%), Gaps = 20/166 (12%)
Strand=Plus/Plus
Query 26 AGAGTCTCTCAGCTTCGAAGCACGAGCGGAGCGAGGCAAACCAAAAATCCAGTTCGCTTC 85
||||||||||||||||||||||||||| ||||||||||||||||||| | | | ||
Sbjct 16 AGAGTCTCTCAGCTTCGAAGCACGAGC-GAGCGAGGCAAACCAAAAAGA-A-TCCAATT- 71
Query 86 GTTGCCATCTTCAATTCTTGTTCATCTTCCTCAAATTCAGCTCGAAAGTTCCAACCTTTA 145
| | ||| | | ||| | || | ||||||||||||||| || |||||||||
Sbjct 72 -TA-C-ATC---A-T-CTT---C-TC--CA--AAATTCAGCTCGAAATTTTCAACCTTTA 115
Query 146 CTTCTTTAATGGAGATTCTCCATCCCGATCAAGCAACCTCAAACGG 191
|| ||||||||| |||||||| |||||||||| ||||||||||
Sbjct 116 CTGGTTTAATGGACATTCTCCAGACCGATCAAGCTTCCTCAAACGG 161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121585719990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5