BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343566
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18969.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 695 0.0
AT2G18970.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 444 4e-124
> AT2G18969.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: sequence-specific DNA binding transcription factors;transcription
regulators (TAIR:AT4G30180.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:8229047-8229574
REVERSE LENGTH=528
Length=528
Score = 695 bits (376), Expect = 0.0
Identities = 440/470 (94%), Gaps = 7/470 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGGCAAATTATAAACAAGAGAAAACGAGTCTTTTCTCTCCAACCAAACAAGAAC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAGGCAAATTATAAACAAGAGAAAGCGAGTCTTTTCTCTCCAACCAAACAAGAAC 60
Query 61 CCTAATGC-GCTCTTCGCAAGAAGATACGTGAGCCACTTGGTTCCAGCTCTCAAGAAGAT 119
||||| || | | |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 61 CCTAAGGCAG-TTTTCGCAAGAAGATACGTGAGTCACTTGGTTCCAGCTCTTAAAAAGAT 119
Query 120 CAACATGAACAAATCCTCTTCAAAAACAAACCACCCAAGTTTTGAAAAAACCGTGAAACA 179
||||||||||||||||||||||||||| ||| | | |||||| ||| |||||||||||||
Sbjct 120 CAACATGAACAAATCCTCTTCAAAAACCAACAAACAAAGTTTAGAACAAACCGTGAAACA 179
Query 180 TGAAGTAGACATGGCTTTCGCCTTGTCTGCTCAAGAATTCGCGTGGAGCCGTTTCTTGCA 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGAAGTAGACATGGCTTTCGCATTGTCTGCTCAAGAATTCGCGTGGAGCCGTTTCTTGCA 239
Query 240 ACAAAAGCTATTATCTT-CCGTTCATGATGATCCAGTAAGAACTAGTAGTTCTCCTTCCG 298
||| ||||||||||||| || || ||||||||||| | || |||||||||||||||||||
Sbjct 240 ACAGAAGCTATTATCTTCCCCTT-ATGATGATCCAATTAGCACTAGTAGTTCTCCTTCCG 298
Query 299 AGATTCTAGAAAGATCAAGCAAGAAACAAGTTGGAGAAAAATACCAAGAC--CG-CGACG 355
|||||||||||||||| ||||||| ||||| |||||||||| |||||||| || ||| |
Sbjct 299 AGATTCTAGAAAGATCGAGCAAGAGACAAGGTGGAGAAAAACACCAAGACAGCGACGAAG 358
Query 356 AAGAAGAAGGAGGAGAGATCAAGAAGAGATTGAAGGAATTGCAGAAGCTTTTGCCAGGTG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAGAAGAAGGAGGAGAGATCAAGAAGAGATTGAAGGAATTGCAGAAGCTTTTGCCAGGTG 418
Query 416 GAGAAGAGATGAACATGGAGGAGATTTTGAGTGAGATTGGAAGCTACATT 465
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAGAAGAGATGAACATGGAGGAGATTTTGAGTGAGATTGGAAGCTACATT 468
> AT2G18970.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:8229116-8229755 FORWARD LENGTH=531
Length=531
Score = 444 bits (240), Expect = 4e-124
Identities = 275/291 (95%), Gaps = 5/291 (2%)
Strand=Plus/Minus
Query 170 CCGTGAAACATGAAGTAGACATGGCTTTCGCCTTGTCTGCTCAAGAATTCGCGTGGAGCC 229
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 290 CCGTGAAACATGAAGTAGACATGGCTTTCGCATTGTCTGCTCAAGAATTCGCGTGGAGCC 231
Query 230 GTTTCTTGCAACAAAAGCTATTATCTT-CCGTTCATGATGATCCAGTAAGAACTAGTAGT 288
||||||||||||| ||||||||||||| || || ||||||||||| | || |||||||||
Sbjct 230 GTTTCTTGCAACAGAAGCTATTATCTTCCCCTT-ATGATGATCCAATTAGCACTAGTAGT 172
Query 289 TCTCCTTCCGAGATTCTAGAAAGATCAAGCAAGAAACAAGTTGGAGAAAAATACCAAGAC 348
|||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||
Sbjct 171 TCTCCTTCCGAGATTCTAGAAAGATCGAGCAAGAGACAAGGTGGAGAAAAACACCAAGAC 112
Query 349 --CG-CGACGAAGAAGAAGGAGGAGAGATCAAGAAGAGATTGAAGGAATTGCAGAAGCTT 405
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 AGCGACGAAGAAGAAGAAGGAGGAGAGATCAAGAAGAGATTGAAGGAATTGCAGAAGCTT 52
Query 406 TTGCCAGGTGGAGAAGAGATGAACATGGAGGAGATTTTGAGTGAGATTGGA 456
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51 TTGCCAGGTGGAGAAGAGATGAACATGGAGGAGATTTTGAGTGAGATTGGA 1
Score = 110 bits (59), Expect = 2e-23
Identities = 61/62 (98%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 1 ATGGAGAGGCAAATTATAAACAAGAGAAAACGAGTCTTTTCTCTCCAACCAAACAAGAAC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 350 ATGGAGAGGCAAATTATAAACAAGAGAAAGCGAGTCTTTTCTCTCCAACCAAACAAGAAC 291
Query 61 CC 62
||
Sbjct 290 CC 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23911453972
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5