BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg343568

Length=1026
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50220.1 | Symbols:  | F-box family protein | chr5:20446068-...  87.9    2e-16


> AT5G50220.1 | Symbols:  | F-box family protein | chr5:20446068-20447200 
REVERSE LENGTH=1074
Length=1074

 Score = 87.9 bits (47),  Expect = 2e-16
 Identities = 93/113 (82%), Gaps = 11/113 (10%)
 Strand=Plus/Plus

Query  164  AACAATGGTCAACCATAATCA-GCAGCCGTAAAGATTTCATAGACTCGATCGTGACTCGT  222
            ||||||||||| | || || | ||||| ||| ||| ||||||||||||||||||||||||
Sbjct  173  AACAATGGTCATCAATTAT-AGGCAGCAGTAGAGACTTCATAGACTCGATCGTGACTCGT  231

Query  223  TCTTTGGCTAAGCC--GCTGCGTGATGAT-CTCCA-CTTCATCTTCCACCACA  271
            |||||| || ||||  | | |||||| || ||| | || ||| ||||||||||
Sbjct  232  TCTTTGTCTCAGCCTAG-T-CGTGAT-ATACTC-ATCT-CATTTTCCACCACA  279



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 50284381147


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5