BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343571
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18915.2 | Symbols: LKP2, ADO2 | LOV KELCH protein 2 | chr2:... 2892 0.0
AT2G18917.1 | Symbols: | other RNA | chr2:8197114-8198103 FORW... 219 1e-55
> AT2G18915.2 | Symbols: LKP2, ADO2 | LOV KELCH protein 2 | chr2:8194572-8197483
REVERSE LENGTH=2284
Length=2284
Score = 2892 bits (1566), Expect = 0.0
Identities = 1742/1828 (95%), Gaps = 8/1828 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTGGGATAGTGATTCCGATCTCAGCGGGGGAGATGAAGTGGCGGAGGATGGATGG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 ATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGATGAAGTGGCGGAGGATGGATGG 300
Query 61 TTCGGCGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGAACGGCGCCG 120
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 TTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGCACGGCGCCG 360
Query 121 TGTGGTTTTGTGGTCAGCGATGCTCTTGAACCTGATAACCCTATCATTTATGTTAACACT 180
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 TGTGGGTTTGTGGTCAGCGATGCTCTTGAACCTGACAACCCTATCATTTATGTTAACACT 420
Query 181 GTTTTTGAGATTGTTACTGGTTATCGAGCTGAGGAAGTTATTGGTCGAAATTGCCGGTTC 240
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 421 GTTTTTGAGATTGTTACTGGTTATCGAGCTGAAGAAGTTATTGGTCGAAATTGCCGTTTC 480
Query 241 TTACAATGTAGAGGGCCATTTGCTAAAAGAAGGCATCCAAAT-GTAGATTCTACAATTGT 299
|| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 481 TTGCAATGTAGAGGGCCATTTACTAAAAGAAGGCATCC-AATGGTAGATTCTACAATTGT 539
Query 300 GA-CGAAGATGCGGCAATGTCTAGAAAATGGCATCGAGTTTCAAGGCGAGTTGCTCAACT 358
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 -AGCGAAGATGCGACAATGTCTAGAAAATGGCATCGAGTTTCAAGGCGAGTTGCTCAACT 598
Query 359 TTCGGAAAGATGGATCTCCCTTGATGAACAAGCTGCGTCTAGTCCCTATCCGTGAAGAAG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTCGGAAAGATGGATCTCCCTTGATGAACAAGCTGCGTCTAGTCCCTATCCGTGAAGAAG 658
Query 419 ACGAAATCACTCATTTCATAGGCGTTCTTTTATTCACAGATGCAAAAATTGATCTTGGCC 478
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 659 ACGAAATCACTCATTTCATAGGCGTTCTCTTATTTACAGATGCAAAAATTGATCTTGGCC 718
Query 479 CATCTCCTGATTTATCTGCAAAAGAAATTCCAAGAATATCTCGCTCATTTACTTCTGCTT 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 719 CATCTCCTGATTTATCTGCAAAAGAAATTCCTAGAATATCTCGCTCATTTACTTCTGCTT 778
Query 539 TACCAATCGGAGAGCGTAATGTTTCTCGTGGACTTTGTGGGATATTCGAACTGAGTGATG 598
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 779 TACCAATCGGAGAGCGTAATGTTTCTCGTGGACTCTGTGGGATATTCGAACTGAGTGATG 838
Query 599 AGGTCATAGCTATCAAGATATTGTCACAGTTGACTCCTGGTGATATTGCATCGGTTGGTT 658
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AAGTAATAGCTATCAAGATATTGTCACAGTTGACTCCTGGTGATATTGCATCGGTTGGTT 898
Query 659 GTGTATGTCGGCGGCTCAATGAGTTGACAAAGAATGATGATGTATGGAGAATGGTCTGTC 718
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 GTGTATGTAGGCGGCTCAATGAGTTGACAAAGAATGATGATGTGTGGAGAATGGTCTGTC 958
Query 719 AAAACACATGGGGTACAGAGGCAACACGTGTTCTTGAGAGTGTTCCTGGTGCAAAGAGGA 778
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 959 AAAACACATGGGGTACCGAGGCAACACGTGTTCTTGAGAGTGTTCCCGGTGCAAAAAGGA 1018
Query 779 TCGGTTGGGTGCGACTGGCCCGAGAGTTTACCACACACGAAGCAACAGCATGGAGGAAGT 838
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1019 TTGGTTGGGTGCGACTGGCCCGAGAGTTCACCACTCACGAAGCAACAGCATGGAGGAAGT 1078
Query 839 TTTCGGTTGGAGGTACTGTTGAGCCTTCCCGGTGTAATTTCAGTGCATGTGCAGTTGGGA 898
|||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1079 TTTCAGTTGGAGGTACTGTTGAGCCTTCTCGGTGTAATTTCAGCGCATGTGCAGTTGGGA 1138
Query 899 ACAGGATTGTTATCTTTGGCGGGGAAGGTGTAAATATGCAGCCGATGAATGATACATTTG 958
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1139 ACAGGATTGTTATCTTTGGCGGGGAAGGTGTGAATATGCAGCCGATGAATGATACATTTG 1198
Query 959 TGTTGGACCTTGGCTCGAGTAGCCCCGAGTGGAAATCCGTTCTGGTCAGCTCTCCTCCAC 1018
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1199 TGTTGGACCTTGGCTCGAGTAGTCCCGAGTGGAAATCTGTTCTGGTCAGCTCTCCTCCTC 1258
Query 1019 CGGGGCGCTGGGGTCACACACTTTCTTGTGTCAATGGATCCCGTTTAGTAGTGTTTGGAG 1078
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1259 CGGGTCGCTGGGGTCACACACTTTCTTGTGTCAACGGTTCCCGTTTAGTAGTGTTTGGAG 1318
Query 1079 GTTACGGGAGCCACGGATTACTCAACGATGTGTTCTTATTAGACCTTGATGCAGACCCGC 1138
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1319 GTTACGGGAGCCACGGATTACTCAATGATGTGTTCTTATTAGACCTTGATGCAGACCCAC 1378
Query 1139 CAAGCTGGAGAGAAGTATCCGGATTGGCTCCTCCAATACCAAGATCATGGCACAGTTCGT 1198
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1379 CAAGCTGGAGGGAAGTATCCGGATTGGCCCCTCCAATACCAAGATCATGGCACAGTTCGT 1438
Query 1199 GCACACTTGATGGCACTAAGCTGATTGTATCAGGTGGTTGTGCTGATTCAGGAGCTCTAC 1258
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1439 GCACACTTGATGGCACTAAGCTGATTGTATCTGGTGGTTGTGCTGATTCAGGAGCTCTAC 1498
Query 1259 TCAGCGATACATTCCTGCTTGACCTTTCGATGGATATACC-GACTTGGAGGGAGATACCA 1317
||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 1499 TCAGCGATACATTCCTGCTTGACCTATCGATGGATATACCTG-CTTGGAGGGAGATACCG 1557
Query 1318 GTTCCATGGACTCCTCCATCTCGCCTCGGACATACACTAACCGTCTATGGTGACCGCAAG 1377
|||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1558 GTTCCATGGACTCCCCCATCTCGCCTCGGGCATACTCTAACTGTCTATGGTGACCGCAAG 1617
Query 1378 ATCCTCATGTTTGGCGGTCTTGCCAAAAGCGGTTCTCTGAGATTCCGCTCTAACGATGTA 1437
|| || |||||||||||||| || |||| |||| || |||||||||||||||||||||||
Sbjct 1618 ATTCTTATGTTTGGCGGTCTAGCTAAAAACGGTACTTTGAGATTCCGCTCTAACGATGTA 1677
Query 1438 TACACGATGGATCTTAGCGAGGATGAGCCAAGTTGGAGACCCGTGATTGGGTATGGATCT 1497
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 1678 TACACGATGGATCTTAGCGAGGATGAACCGAGTTGGAGACCTGTGATTGGGTATGGATCT 1737
Query 1498 AGCCTCCCGGGAGGCATGGCAGCTCCGCCATCAAGGCTGGATCATGTGGCAATCAGCCTT 1557
|||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct 1738 AGCCTCCCCGGAGGCATGGCAGCTCCACCACCAAGGCTGGACCATGTGGCAATCAGCCTT 1797
Query 1558 CCTGGTGGTAGAATCTTGATCTTTGGTGGTTCAGTTGCAGGGCTTGACTCAGCATCTCAG 1617
|| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 1798 CCCGGTGGTAGAATCTTGATCTTTGGTGGTTCGGTTGCAGGGCTTGACTCGGCTTCTCAG 1857
Query 1618 CTTTATCTTCTTGATCCAACA-GAGGAGAAACCAGCATGGAGAATACTGAATGTTCAGGG 1676
||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 1858 CTTTATCTTCTTGATCCAA-ATGAGGAGAAACCGGCATGGAGAATACTGAATGTTCAGGG 1916
Query 1677 AGGTCCGCCGAGGTTTGCGTGGGGACACACCACTTGTGTAGTCGGAGGAACTCGGTTGGT 1736
|||||||||||||||||| ||||||||||| || ||||| |||||||||||||| |||||
Sbjct 1917 AGGTCCGCCGAGGTTTGCATGGGGACACACAACATGTGTGGTCGGAGGAACTCGATTGGT 1976
Query 1737 CGTCTTAGGTGGTCAAACCGGTGAAGAGTGGATGCTAAATGAAGCTCATGAACTATTATT 1796
||| ||||||||||| |||||||||||||||||| |||||||||| |||||||| ||| |
Sbjct 1977 CGTATTAGGTGGTCAGACCGGTGAAGAGTGGATGTTAAATGAAGCACATGAACTGTTACT 2036
Query 1797 AGCAACGTCTACTACTGCAAGCACTTGA 1824
|||||| ||||| |||||||| ||||||
Sbjct 2037 AGCAACTTCTACCACTGCAAGTACTTGA 2064
> AT2G18917.1 | Symbols: | other RNA | chr2:8197114-8198103 FORWARD
LENGTH=831
Length=831
Score = 219 bits (118), Expect = 1e-55
Identities = 126/130 (97%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 1 ATGGAGTGGGATAGTGATTCCGATCTCAGCGGGGGAGATGAAGTGGCGGAGGATGGATGG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 130 ATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGATGAAGTGGCGGAGGATGGATGG 71
Query 61 TTCGGCGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGAACGGCGCCG 120
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 70 TTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGCACGGCGCCG 11
Query 121 TGTGGTTTTG 130
||||| ||||
Sbjct 10 TGTGGGTTTG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90260579910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5