BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343582
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18800.1 | Symbols: ATXTH21, XTH21 | xyloglucan endotransglu... 1487 0.0
AT2G12660.1 | Symbols: | pseudogene, xyloglucan endotransglyco... 394 8e-109
AT5G57560.1 | Symbols: TCH4, XTH22 | Xyloglucan endotransglucos... 200 2e-50
> AT2G18800.1 | Symbols: ATXTH21, XTH21 | xyloglucan endotransglucosylase/hydrolase
21 | chr2:8144912-8146265 FORWARD LENGTH=953
Length=953
Score = 1487 bits (805), Expect = 0.0
Identities = 883/920 (96%), Gaps = 7/920 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTCTCA-TACACTTTTGGTTATGTCAATATCTCTCTTTCTTTGTTTAAACATATT 59
||||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 36 ATGGTTTCT-AGTACACTTTTGGTTATGTCAATATCTCTCTTTCTTGGTTTAAGCATATT 94
Query 60 GCTTGTTGTACACGCTAAAGATTTAAACCAAGACATTGACATAACCTGGGGTGATGGTAG 119
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 95 GCTTGTTGTACACGGTAAAGATTTCAACCAAGACATTGACATAACCTGGGGTGATGGTAG 154
Query 120 AGGAAATATTTTGAGCAATGGTACTCTTCTAAATCTCGTTCTTGATCAATCTTCGGGATC 179
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 155 AGGAAATATTTTGAACAATGGTACTCTTCTAAATCTCGGTCTTGATCAATCTTCGGGTTC 214
Query 180 AGGGTTTCAATCGAAAGCCGAGTATTTGTACGGAAAA-TTCGATATGCAGATCAAACTTG 238
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 215 AGGGTTTCAATCGAAAGCCGAGTATTTGTACGGAAAAGTT-GATATGCAGATCAAACTTG 273
Query 239 TCCCGGGAAATTCAGCCGGGACCGTGACCACCTTCTATTTGAAGTCTCAAGGATTAACAT 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 274 TCCCGGGAAATTCAGCCGGGACCGTGACCACCTTCTACTTGAAGTCTCAAGGATTAACAT 333
Query 299 GGGACGAGATAGATTTCGAGTTTTTGGGTAATGTTAGTGGAGATCCTTACATTGTTCACA 358
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 334 GGGACGAGATAGATTTCGAGTTTTTGGGGAATGTTAGTGGAGATCCATACATTGTTCACA 393
Query 359 CTAATGTTTACACTCAAGGCAAAGGTGATAGAGAGCAACAATTCTACCTTTGGTTCGATC 418
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 394 CTAATGTTTACACTCAAGGCAAGGGTGATAGAGAGCAACAATTCTACCTTTGGTTCGATC 453
Query 419 CAACAGCTGAGTTCCACAACTACTCCATTCTATGGAATCCGAGTCACATAGTGTTCTATA 478
||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 454 CAACAGCCGCGTTCCACAACTACTCTATTCTATGGAATCCGAGTCACATAGTGTTCTATA 513
Query 479 TTGATGGGAAGCCAATTAGAGAATTCAAGAATTTGGAAGCATTGGGTGTGGCTTATCCAA 538
|||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 514 TTGATGGGAAGCCAATCAGAGAATTCAAGAACTTGGAAGTATTGGGTGTGGCTTATCCAA 573
Query 539 AAAACCAACCCATGAGAATGTATGGTAGTCTATGGAACGCAGACGATTGGGCCACGAGGG 598
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 574 AGAACCAACCCATGAGAATGTATGGAAGTCTATGGAACGCAGACGATTGGGCCACGAGGG 633
Query 599 GAGGGCTGGTTAAGACAAACTGGTCACAGGGACCATTCGTAGCCTCTTTCATGAACTACA 658
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GAGGGCTGGTAAAGACAAACTGGTCACAGGGACCATTCGTAGCCTCTTTCATGAACTACA 693
Query 659 ACTCCGAGAATGCTTGTGTTTGGTCCATCGTTAATGGAACCACAACTATTTCTCCTTGTA 718
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 694 ACTCCGAGAATGCTTGTGTTTGGTCCATCGTTAATGGAACCACAACTACTTCTCCTTGTA 753
Query 719 GCCCCGGTGGCTCG--T-CTTCTTCTTCGAGCAGTAGTAGCGAGTGGTTTTCACAGAGAG 775
||||||||| |||| | |||||||||||||||||| ||||||||||||||| |||||||
Sbjct 754 GCCCCGGTGACTCGACTTCTTCTTCTTCGAGCAGTACTAGCGAGTGGTTTTCGCAGAGAG 813
Query 776 GGATGGATTCTTCAAGTAAGAAAGTTCTTAGATGGGTTCAGAAGAAGTTTATGGTTTACA 835
|||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 814 GGATGGATTCTTCAAGCAAGAAAGTTCTTAGATGGGTTCAGAGGAAGTTCATGGTTTACA 873
Query 836 ATTATTGTAAGGACAAGAAGCGATTCTCTAAGGGTTTGCCTGTTGAATGCACTGCTAAGA 895
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 874 ATTATTGTAAGGACAAGAAGCGATTCTCTAATGGTTTGCCTGTTGAATGCACTGCTAAGA 933
Query 896 ACAAGGACACAAACTCTTGA 915
||||| ||||||| ||||||
Sbjct 934 ACAAGAACACAAAGTCTTGA 953
> AT2G12660.1 | Symbols: | pseudogene, xyloglucan endotransglycosylase,
blastp match of 82% identity and 5.9e-44 P-value
to GP|19911573|dbj|BAB86890.1||AB083025 syringolide-induced
protein 19-1-5 {Glycine max} | chr2:5181465-5182059 REVERSE
LENGTH=595
Length=595
Score = 394 bits (213), Expect = 8e-109
Identities = 256/277 (92%), Gaps = 2/277 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTCTCATACACTTTTGGTTATGTCAATATCTCTCTTTCTTTGTTTAAACATATTG 60
||| ||||| |||||||||||| |||||||||||||||||||||| |||||| |||||||
Sbjct 49 ATGTTTTCTGATACACTTTTGGCTATGTCAATATCTCTCTTTCTTGGTTTAAGCATATTG 108
Query 61 CTTGTTGTACACGCTAAAGATTTAAACCAAGACATTGACATAACCTGGGGTGATGGTAGA 120
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 109 CTTGTTGTACACGGTAAAGATTTCGACCAAGACATTGACATAACCTGGGGTGATGGTAGA 168
Query 121 GGAAATATTTTGAGCAATGGTACTCTTCTAAATCTCGTTCTTGATCAATCTTCGGGATCA 180
||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| | |
Sbjct 169 GGAAATATTTTGAGCAATGGTACTCTTCTAAATTTCGATCTTGATCAATCTTTGGGTTTA 228
Query 181 GGGTTTCAATCGAAAGCCGAGTATTTGTACGGAAAA-TTCGATATGCAGATCAAACTTGT 239
||||||||||||| ||| ||||||||||| |||||| || |||||| |||||||||||||
Sbjct 229 GGGTTTCAATCGAGAGCTGAGTATTTGTATGGAAAAGTT-GATATGTAGATCAAACTTGT 287
Query 240 CCCGGGAAATTCAGCCGGGACCGTGACCACCTTCTAT 276
|||||||||||||| |||||||||||||||| |||||
Sbjct 288 CCCGGGAAATTCAGTCGGGACCGTGACCACCATCTAT 324
Score = 267 bits (144), Expect = 2e-70
Identities = 161/169 (95%), Gaps = 1/169 (1%)
Strand=Plus/Plus
Query 277 TTGAAGTCTCAAGGATTAACATGGGACGAGATAGATTTCGAGTTTTTGGGTAATGTTAGT 336
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 415 TTGAAGTCTCAAGGATTAACATGGGACGAGATAGATTTCGAGTTTTTGGGGAATGTTAGT 474
Query 337 GGAGATCCTTACATTGTTCACACTAATGTTTACACTCAAGGCAAAGGTGATAGAGAGCAA 396
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 475 GGAGATCCATACATTGTTCACACTAATGTTTACACTCAAGGCAAGGGTGATAGAGAGCAG 534
Query 397 CAATTCTACCTTTGGTTCGATCCAACAGCTGAGTTC-CACAACTACTCC 444
||||||||||||||||||||||||||||| | |||| |||||||| |||
Sbjct 535 CAATTCTACCTTTGGTTCGATCCAACAGCCGCGTTCTCACAACTAATCC 583
> AT5G57560.1 | Symbols: TCH4, XTH22 | Xyloglucan endotransglucosylase/hydrolase
family protein | chr5:23307130-23308282 REVERSE
LENGTH=1068
Length=1068
Score = 200 bits (108), Expect = 2e-50
Identities = 390/523 (75%), Gaps = 32/523 (6%)
Strand=Plus/Plus
Query 90 AGACATTGACATAACCTGGGGTGATGGTAGAGGAAATATTTTGAGCAATGGTA-CTCTTC 148
|||| |||| || || |||||||||||| | ||| | || || |||||| | ||||
Sbjct 122 AGACGTTGAGATCACTTGGGGTGATGGTCGTGGACAGATCAAGAACAATGG-AGAGCTTC 180
Query 149 TAAATCTCGT-TCTTGATCAATCTTCGGGATCAGGGTTTCAATCGAAAGCCGAGTATTTG 207
| | | | | ||| ||| |||| || || || || || ||||| ||| |||||| |||
Sbjct 181 TCACT-TTATCTCTAGATAAATCCTCTGGTTCTGGATTCCAATCCAAAAACGAGTACTTG 239
Query 208 TACGGAAAATTCGATATGCAGATCAAACTTGTCCCGGGAAATTCAGCCGGGACCGTGACC 267
| || ||| || ||||| || || |||||||| ||||| || || || || || ||
Sbjct 240 TTTGGTAAAGTCTCCATGCAAATGAAGCTTGTCCCTGGAAACTCCGCAGGAACAGTCACA 299
Query 268 AC-CTTCTATTTGAAGTCTCAAGGATTAACATGGGACGAGATAGATTTCGAGTTTTT-GG 325
|| ||| || ||||| || | ||| |||||||||||||||||||||||||||||| ||
Sbjct 300 ACACTT-TACTTGAAATCACCTGGAACAACATGGGACGAGATAGATTTCGAGTTTTTAGG 358
Query 326 GTAATGTTA-GTGGAGATCCTTACATTGTTCACACTAATGTTTACACTCAAGGCAAAGGT 384
| ||| | | ||||||| ||||||| ||||||| ||||| ||||| |||||||||||
Sbjct 359 G-AAT-TCAAGTGGAGAACCTTACACACTTCACACAAATGTCTACACACAAGGCAAAGGA 416
Query 385 GATAGAGAGCAACAATTCTACCTTTGGTTCGATCCAACAGCTGAGTTCCACAACT-ACTC 443
|| | ||| ||||||||| | || ||||| |||||||||||| | ||||||| || || |
Sbjct 417 GACAAAGAACAACAATTCAAACTCTGGTTTGATCCAACAGCTAATTTCCACA-CTTACAC 475
Query 444 CATTCTATGGAATCCGAGTCACA-T-AGTGTTCTATATT-GATGGGAAG-CCAATTAGAG 499
||||| ||||| || | | | | | | ||| | | ||||| || || || ||||
Sbjct 476 TATTCTCTGGAACCC-ACAAAGAATCATT-TTC-ACCGTCGATGG-AACTCCGATCAGAG 531
Query 500 AATTCAAGAATTTGGAAG-CAT-TGGG---TGTGGCTTATCCAAAAAACCAACCCATGAG 554
|||||||||| |||| | | | | || | || || ||| || ||| |||| |||||
Sbjct 532 AATTCAAGAACATGGA-GTC-TCTAGGCACTCTG--TT-TCCCAAGAACAAACCAATGAG 586
Query 555 AATGTA-TGGTAGTCTATGGAACGCAGACGATTGGGCCACGAG 596
|||||| | | ||||| |||||||| || |||||||| |||||
Sbjct 587 AATGTACTCG-AGTCTTTGGAACGCTGATGATTGGGCAACGAG 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5