BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343604
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20430.1 | Symbols: RIC6 | ROP-interactive CRIB motif-contai... 998 0.0
> AT2G20430.1 | Symbols: RIC6 | ROP-interactive CRIB motif-containing
protein 6 | chr2:8808667-8810200 REVERSE LENGTH=1058
Length=1058
Score = 998 bits (540), Expect = 0.0
Identities = 598/627 (95%), Gaps = 0/627 (0%)
Strand=Plus/Plus
Query 1 ATGTCAAGCTCCAAGATGAAAAGCCTCTTGAAAGGGCTCCGATATATTTCTCAAGTATTT 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 432 ATGTCAAGCTCCAAGATGAAAAGCCTCTTGAAAGGGCTCCGATACATTTCTCAAGTATTT 491
Query 61 GAAAGTGAAAAAGAAGAAGAAATACAGATCGGAAATCCAACGGATGTAAAACATGTTGCC 120
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 492 GAAAGTGAAAAAGAAGAAGAAATACAAATCGGAAATCCAACGGACGTAAAACATGTTGCC 551
Query 121 CATATCGGTTGGGATGGACCATCCGCTAATGCCACCGCACCAAGCTGGATGACTGAGTTT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 CATATCGGTTGGGATGGACCATCCGCTAATGCCACCGCACCAAGCTGGATGACTGAGTTC 611
Query 181 AACTCTGGCGGGGGATTCGAATCTGGTGAAGGAGGCGGAGAAGATGATTCCTCCATAAAA 240
||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 612 AACTCCGGCGGGGGATTCGAATCTGCTGAAGGAGTCGGAGAAGATGATTCCTCCATAAAA 671
Query 241 TGTATGTCGGAATATGGTGGTCGGTCCAGAGATTTGCCAAATCTACCAAAATCTACGAGG 300
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 672 TGTATGTCGGAATATGGTGGTCGGTCTAGAGATTTGCCAAACCTACCAAAATCTACGAGG 731
Query 301 AAATCGGCGTCGGAGAAAGGTTCTCCGACGAAAGAAAAATCATCAGACAAAACTAAACGC 360
||| | ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 732 AAAGCAGCGTCCGAGAAAGGTTCTCCGACAAAAGACAAATCATCAGACAAAACTAAACGT 791
Query 361 CGGTCTTCGAACAAAGGCACATCGTCATCGTCGAGGAGACCAAAGGAAGCCACTGAAGAA 420
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CGCTCTTCTAACAAAGGGACATCGTCATCGTCGAGGAGACCAAAGGAAGCCACTGAAGAA 851
Query 421 CAAGACGAGTTATCTTCTTGGCCTCGTGGAATACCGGAAGTTCCAAAGAAATCAAGGAGG 480
||||||||||| |||||||||||| ||||| |||||||| ||||||||||||| ||||||
Sbjct 852 CAAGACGAGTTGTCTTCTTGGCCTAGTGGATTACCGGAAATTCCAAAGAAATCTAGGAGG 911
Query 481 AAGAAGAAGTCGACAAAAGAAACCGCGGTTAATGGAGGGTCATCAAGATCGACAAGAAGA 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 AAGAAGAAGTCGACGAAAGAAACCGCGGTTAATGGAGGGTCATCAAGATCGACAAGAAGA 971
Query 541 TCTGATGTGGATAATATGTCGGAATTTATGTCTGAGACTGGTTCGGTGAGATCTATGCCT 600
|||||||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 972 TCTGATGTCGATAACATGTCGGAATATATGTCTGAGACTGGTTCTGTGAGATCTATGCCT 1031
Query 601 CAATTCGACAATAGAGATGACTTTTGA 627
|||||||||||||||||||| ||||||
Sbjct 1032 CAATTCGACAATAGAGATGATTTTTGA 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5