BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343665
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20970.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1391 0.0
> AT2G20970.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf
whorl, sepal; EXPRESSED DURING: petal differentiation and
expansion stage; Has 295 Blast hits to 269 proteins in 111
species: Archae - 15; Bacteria - 63; Metazoa - 84; Fungi -
25; Plants - 9; Viruses - 2; Other Eukaryotes - 97 (source:
NCBI BLink). | chr2:9009867-9011067 FORWARD LENGTH=1047
Length=1047
Score = 1391 bits (753), Expect = 0.0
Identities = 959/1058 (91%), Gaps = 16/1058 (2%)
Strand=Plus/Plus
Query 7 ATGAATAAGGTTGAAGAAGAAGAAAAAGAGAGGAGACTACAAGCAAATGGATTGTTTTGG 66
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1 ATGAATAAGGTTGAAGAAGAAGAAAAAAAGAGGAGACTAGAAGCAAATGGATTGTTTTGG 60
Query 67 ACAGAGCGTTTGTTTCTGTTTCTACTTGTCATCTTCCCCACATACCTCGTGGATCTTATC 126
||||| |||||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 61 ACAGAACGTTTGTTTCTGTTTCTACTTGTCATCTTCCCAACATACCTCTTAGATCTTATC 120
Query 127 ATCCCTATCATTCTCTCCACTACTCTTTTCGCATTACCATTCTTCTTCTTTTGCCCTAAT 186
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 121 ATCCCTATCATTCTCGCCACTACTCTTTTCGCATTACCATTCTTCTTCTTTTGCACTAGT 180
Query 187 CTCTCTTCAGTTGGACCATCTGGTATTGGAAGAATCTGGCTGTTTATATTGGACCGCTCT 246
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 181 CTCTCTTCAGTTGGACCATCAGGTATTGGAAAAATCTGGCTGTTTATATTGGACCGCTCT 240
Query 247 ACGTTTTACTTAGCCTTTGAGTATTATAAACTATTGGCGGGAGGCTTTGAGCTCACATTC 306
|||||||||||||||| |||||||||||||||||||| ||||||||||||| || |||
Sbjct 241 ACGTTTTACTTAGCCTATGAGTATTATAAACTATTGGATCGAGGCTTTGAGCTTACCTTC 300
Query 307 CTTTGGCGTCTCACCGTTTTCCTCTCCATCT-TGATCCACTCCG-TTTACATCGC-CGAG 363
|| |||||||||||||||||||||||| | | |||||||||| | ||||||| | ||||
Sbjct 301 CTCTGGCGTCTCACCGTTTTCCTCTCCGT-TGTGATCCACTC-GATTTACAT-GTTCGAG 357
Query 364 CATTACCTTAGATCTCATCAAGCCGTACCACCTCCTCCACCTCCTCCACCTCAGTCTAAG 423
|||| ||||||||||||||||| ||||||||||||||| ||| |||||| ||||||
Sbjct 358 CATTTCCTTAGATCTCATCAAGTCGTACCACCTCCTCC---TCC---ACCTCAATCTAAG 411
Query 424 AATGATGAGACTCCCGGTGATGTGTGCAAGGAAGTGGAAAAGATGAAGGAGTTAGTGGAA 483
| |||||||||||||||||| ||| || || ||||||| |||||||||||||||||||||
Sbjct 412 AGTGATGAGACTCCCGGTGAAGTGCGCGAGCAAGTGGAGAAGATGAAGGAGTTAGTGGAA 471
Query 484 GATGGGAAGAAGATGATGACATTTTTGGAGAACACGATCCACTCAGGTCTTGAAACTCAT 543
||||||||||||| | ||||| || || |||||| |||||||||| ||||||||||||
Sbjct 472 GATGGGAAGAAGAGGGTGACAGTTATGCAGAACATAATCCACTCAGTTCTTGAAACTCAA 531
Query 544 AGAAAAGAGTGGGGAGAGTTTATTGATGAGTTGAGCAAAGATGGGAAGAAGATGATGACG 603
||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||
Sbjct 532 AGAAAAGAGTGGGGAGAATTTCTTGATGAGTTGAGCAAAGATGGGAAGAAGACAATGACG 591
Query 604 AAATTGGACGGTATGATCTGCTCACAACTTGGAACTCTGAGAGACAACATGCGCCTCAAT 663
|||| || |||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 592 GAATTAGATGGTATGATCTGCTCACAACTTGGAACTCTGAGGGACAACATGCGCCACAAT 651
Query 664 GTTGACGAGATATGGCAAGAGCTCCGAGATGAGTTAAGATCTAAAGTCGATGAGGATATC 723
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 652 GTTGACGAGATATGGCAAGAGCTCCGAGATGAGTTGAGATCTAAAGTCGACGAGGATATC 711
Query 724 AAAGCTTCGGGACAAGATCTTAACAAAGATGTCAGATCTGTGGCCGACCAACTCCGTGAG 783
||||||||| |||||||||| ||||||||||| | |||||||||||| |||||||| |||
Sbjct 712 AAAGCTTCGAGACAAGATCTAAACAAAGATGTTAAATCTGTGGCCGATCAACTCCGCGAG 771
Query 784 ACCTATCTTGCCGTCCAAGAAATCATCAAAGAAGCCAAGGCCCACGAGACCAACCTTATC 843
||||| |||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||
Sbjct 772 ACCTACCTTGCCGTCCAAGAAACCATCAAAGAAGCCAAGACCCACGAAACCTACCTTATC 831
Query 844 GACCaaaaaaaTAGACGGGTGATAAGAGGAGAAGAGGTTGAGGGATTTGCTGAGCTGAGG 903
||||||| |||||||||||||||||||| || || |||||||||||| | |||||||||
Sbjct 832 AACCAAAACAATAGACGGGTGATAAGAGGCGAGGACGTTGAGGGATTTACCGAGCTGAGG 891
Query 904 GAGCAAGTGCGGCGAA-TGGCGGTTGAGGCAGAGATTGCTGCCGAGGAGCTCTCACGTGC 962
|||||||||| | || ||||| ||||||| |||||| | || |||||||||||| ||||
Sbjct 892 GAGCAAGTGCAAC-AACTGGCGTTTGAGGCGGAGATTACCGCAGAGGAGCTCTCAAGTGC 950
Query 963 GACTGTGGAGTTGGTGGAGGCAGGGATCCAGCAATGGGAGGAGGACAACTTCGACTATCT 1022
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 951 GACGGTGGAGTTGGTGGAGGCAGGGATCGAGCAATGGGAGGAGGACAACTTCGACTATAT 1010
Query 1023 TACCT-CCCTCCCTCTCATGTATCTCAATCACAACTAG 1059
||| | |||||| || |||||||||| |||| | ||||
Sbjct 1011 TAC-TACCCTCCGTCACATGTATCTCGATCATATCTAG 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5