BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343760
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22040.1 | Symbols: | Transducin/WD40 repeat-like superfami... 872 0.0
AT3G18140.1 | Symbols: | Transducin/WD40 repeat-like superfami... 736 0.0
> AT2G22040.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:9374438-9376260 REVERSE LENGTH=1080
Length=1080
Score = 872 bits (472), Expect = 0.0
Identities = 563/606 (93%), Gaps = 9/606 (1%)
Strand=Plus/Plus
Query 400 AGGGTTCGAGAATGCCAAAGGGAGTTTAGAAGTGTTTCACCAATTAACACAGTCGTTTTA 459
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 340 AGGGTTCGAGAATGCCAAAGGGAGTTTAGAAGTGTTTCACCAGTTAACACAGTTGTTTTA 399
Query 460 CACCCAAATCAGACTGAATTGATATCTGGTGACCAAAACGGAAATATACGTGTGTGGGAT 519
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 400 CACCCAAATCAGACTGAATTGATATCTGGAGACCAAAACGGTAATATACGTGTATGGGAT 459
Query 520 CTCAGAGCAGATTTGTGTAGCTGTGAACTGGTACCAGAAGTTGGTACACCTATACGGTCT 579
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 460 CTCAGAGCAGATTTGTGTAGCTGTGAACTGGTACCAGAAGTCGGTACACCTATACGGTCT 519
Query 580 TTAACGGTTATGTGGGATGGGACAATGGTGGTTGCTGCTAACGAACGTGGAACATGTTAT 639
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 520 TTAACGGTTATGTGGGATGGGACAATGGTGGTTGCTGCTAACGACCGTGGAACATGTTAT 579
Query 640 GTATGGCGCTCTTTGCAAGGAATACAAACGATGACGGAGTTTGAGCCCCTTCATAAGCTA 699
||||||||||| ||| | || |||||||||||| ||||||||||||||||||||||||
Sbjct 580 GTATGGCGCTCCTTGTGTGAAAGACAAACGATGACCGAGTTTGAGCCCCTTCATAAGCTA 639
Query 700 CAAGCTCATAATGGCTACATCCTTAAATGTCTCCTCTCTCCTGGAAACAA-A--TATCTA 756
|||||||||||| || ||||||||||||||||||| |||||||||||||| | ||||||
Sbjct 640 CAAGCTCATAATAGCCACATCCTTAAATGTCTCCTTTCTCCTGGAAACAACAGATATCTA 699
Query 757 GCGACCGCATCATCTGATAAAACTGTCAAAATATGGAACGTTGATGGTTTCAAACTTGAG 816
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 700 GCGACCGCATCATCTGATAAAACAGTCAAAATATGGAACCTTGATGGTTTCAAACTTGAG 759
Query 817 AAAGTTTTAACAGGACATCGAA-GATGGGTCTGGGACTGTGACTTCTCAA-GGAATGGAG 874
|||||||||||||| ||| ||| ||||||| ||||||||||||||||||| ||| |||||
Sbjct 760 AAAGTTTTAACAGGTCAT-GAAAGATGGGTATGGGACTGTGACTTCTCAATGGA-TGGAG 817
Query 875 AATATCTTGTTACCGCATCATCTGACATGACGGCTAGATTGTGGTCGATGCCAGCGGGTA 934
|||||||||| || |||||||| |||| |||||||||||||||||||||| |||||| |
Sbjct 818 AATATCTTGTAACAGCATCATCGGACACCACGGCTAGATTGTGGTCGATGCGAGCGGGAA 877
Query 935 AAGAAGTGATGGTGTACCATGCTCATCGCAGAGCCACTGTGTGTTGTACACTCC-GTCAT 993
|||||| |||||||||||| |||||||||| ||| ||||||||||||||||| | | | |
Sbjct 878 AAGAAGAGATGGTGTACCAAGCTCATCGCAAAGCTACTGTGTGTTGTACACTACTG-CGT 936
Query 994 GATTAA 999
||||||
Sbjct 937 GATTAA 942
Score = 431 bits (233), Expect = 7e-120
Identities = 309/345 (90%), Gaps = 8/345 (2%)
Strand=Plus/Plus
Query 1 ATGTTTGAAAACAATCCGGATGATCGTCCCTTGTTTCTCGCAACGGCGAGCTATGATCAT 60
|||||||||||||| ||||||||| ||||| ||| ||||||||| || ||| |||||||
Sbjct 1 ATGTTTGAAAACAAACCGGATGATAGTCCCGTGTATCTCGCAACAGCAAGCCATGATCAA 60
Query 61 ACCATTCGATTATGGGAAGCCCGAACCGGTAC-CTGTTACCTTT-CTTTTGCCTATCCTG 118
||||| ||||||||| |||||||||||||| | ||||||| ||| |||| | ||||||||
Sbjct 61 ACCATCCGATTATGGCAAGCCCGAACCGGT-CGCTGTTACTTTTCCTTTCG-CTATCCTG 118
Query 119 ATATGCATGTGAATAGGCTTGAGATAACCCCTGATAAGGGTAAACTTGTAGCAGCTTGCA 178
|| |||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 119 ATTTGCATGTGAATAGGCTTGAGCTAACCCCTGAAAAGGGTAAACTAGTAGCAGCTTGCA 178
Query 179 ATCCTCACATACGACTCTTTGATCTCA-ATTCC-ATGGCCCCTCATTTACCTGTGAGGAC 236
||||||||||||||||||||||||||| || || | ||| |||| ||||||||||||
Sbjct 179 ATCCTCACATACGACTCTTTGATCTCAGAT-CCTACAACCC-TCATATACCTGTGAGGAA 236
Query 237 TTTTGAATCACACACCAACAATGTTATGGCAGTAGGATTCCAATATACTGGACAAATGAT 296
||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 237 TTTTGTATCACACACCAAAAATGTTATGGCGGTAGGATTCCAATATACTGGACACATGAT 296
Query 297 GTATTCAGGATCAGAAGATGGCACAGTTAAGATCTGGGACTTGAG 341
||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 297 GTATTCAGGGTCAGAAGATGGCTCTGTTAAGATCTGGGACTTGAG 341
> AT3G18140.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:6212596-6214785 REVERSE LENGTH=1283
Length=1283
Score = 736 bits (398), Expect = 0.0
Identities = 520/579 (90%), Gaps = 8/579 (1%)
Strand=Plus/Plus
Query 412 TGCCAAAGGGAGT-TTAGAAGTGTTTCACCAATTAACACAGTCGTTTTACACCCAAATCA 470
||||||| ||||| | | ||||||| || | |||| ||||| |||||||||||||||||
Sbjct 552 TGCCAAAAGGAGTATGA-AAGTGTTGCAGCGGTTAATACAGTTGTTTTACACCCAAATCA 610
Query 471 GACTGAATTGATATCTGGTGACCAAAACGGAAATATACGTGTGTGGGATCTCAGAGCAGA 530
|||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |
Sbjct 611 GACTGAATTGATATCTGGAGACCAAAATGGAAATATACGTGTATGGGATCTCAGAGCAAA 670
Query 531 TTTGTGTAGCTGTGAACTGGTACCAGAAGTTGGTACACCTATACGGTCTTTAACGGTTAT 590
|| ||||||||||||||||||||||||||||| |||| || ||||||||||||| |||||
Sbjct 671 TTCGTGTAGCTGTGAACTGGTACCAGAAGTTGATACAGCTGTACGGTCTTTAACTGTTAT 730
Query 591 GTGGGATGGGACAATGGTGGTTGCTGCTAACGAAC-GTGGAACATGTTATGTATGGCGCT 649
|||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||||
Sbjct 731 GTGGGATGGGACAATGGTAGTCGCTGCTAAC-AACCGTGGAACATGTTATGTATGGCGCT 789
Query 650 CT-TTGCAAGGAATACAAACGATGACGGAGTTTGAGCCCCTTCATAAGCTACAAGCTCAT 708
| |||| |||| ||| || ||||| ||||||||||||||||||||||| |||||||||
Sbjct 790 -TGTTGCGTGGAAAACAGACAATGACAGAGTTTGAGCCCCTTCATAAGCTGCAAGCTCAT 848
Query 709 AATGGCTACATCCTTAAATGTCTCCTCTCTCCTGGAAACAAATATCTAGCGACCGCATCA 768
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 849 AATGGCCACATCCTTAAATGTCTCCTCTCTCCTGCAAACAAATATCTAGCGACTGCATCA 908
Query 769 TCTGATAAAACTGTCAAAATATGGAACGTTGATGGTTTCAAACTTGAGAAAGTTTTAACA 828
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 909 TCTGATAAAACTGTCAAAATATGGAACGTCGATGGTTTTAAACTAGAGAAAGTTTTAACA 968
Query 829 GGACATCGAAGATGGGTCTGGGACTGTGACTTCTCAA-GGAATGGAGAATATCTTGTTAC 887
||||||| ||||||||| |||||||| | ||||||| ||| |||||||| |||||| ||
Sbjct 969 GGACATCAAAGATGGGTTTGGGACTGCGTCTTCTCAGTGGA-TGGAGAATTTCTTGTAAC 1027
Query 888 CGCATCATCTGACATGACGGCTAGATTGTGGTCGATGCCAGCGGGTAAAGAAGTGATGGT 947
|||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct 1028 AGCATCATCGGACATGACGGCTAGATTGTGGTCGATGCCAGCAGGCAAAGAAGTGAAAGT 1087
Query 948 GTACCATGCTCATCGCAGAGCCACTGTGTGTTGTACACT 986
|||||| | ||||| || |||||||||||| ||| ||||
Sbjct 1088 GTACCAAGGTCATCACAAAGCCACTGTGTGCTGTGCACT 1126
Score = 281 bits (152), Expect = 7e-75
Identities = 262/312 (84%), Gaps = 19/312 (6%)
Strand=Plus/Plus
Query 35 TTCTCGCAACGGCGAGCTATGATCATACCATTCGATTATGGGAAGCCCG-AACCGGTAC- 92
|||| || ||||| ||||||||||| ||||| ||||| ||||||| ||| ||| ||| |
Sbjct 238 TTCTTGCTACGGCTAGCTATGATCACACCATCCGATTCTGGGAAG-CCGAAACTGGT-CG 295
Query 93 CTGTTACCTTTCTTTTGC-CTATCCTGATAT-GCATGTGAATAGGCTTGAGATAACCCCT 150
|||||||| | | || | ||||||||| | |||||| ||||||||||||||||||||
Sbjct 296 CTGTTACCGTACCATT-CAGTATCCTGAT-TCGCATGTAAATAGGCTTGAGATAACCCCA 353
Query 151 GATAAGGGTAAACTTG-TAGCAGCTTGCAATCCTCACATACGACTCTTTGATCTCAATTC 209
|||||| | | || | | ||||||||||||||||| || |||||||||||| |||||||
Sbjct 354 GATAAGCATTATCTAGCT-GCAGCTTGCAATCCTCATATTCGACTCTTTGATGTCAATTC 412
Query 210 C-ATGGCCCCTCATTTACCTGTGAGGACTTTTGAATCACACACCAACAATGTTATGGCAG 268
| || | ||||| |||||||| ||||| || |||||||||||||||||||||||||
Sbjct 413 CAATAG-TCCTCA---ACCTGTGATGACTTACGATTCACACACCAACAATGTTATGGCAG 468
Query 269 TAGGATTCCAATAT-ACTGGACAAAT-GATGTATTCAGGATCAGAAGATGGCACAGTTAA 326
||||||| |||| | | || | |||| |||||||||||||||||||||||||||||||||
Sbjct 469 TAGGATTTCAATGTGA-TGCA-AAATGGATGTATTCAGGATCAGAAGATGGCACAGTTAA 526
Query 327 GATCTGGGACTT 338
||||||||||||
Sbjct 527 GATCTGGGACTT 538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5