BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343780
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxyla... 534 3e-151
AT3G02530.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 172 3e-42
AT5G16070.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 147 2e-34
> AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxylate
synthase 12 | chr5:20997413-21001046 REVERSE LENGTH=3179
Length=3179
Score = 534 bits (289), Expect = 3e-151
Identities = 349/378 (92%), Gaps = 4/378 (1%)
Strand=Plus/Plus
Query 16 TACCTAAAACGATC-CCGTCCTCCTCCCTCCAACCCGACGGAGTTACCGAGAACGTCGTC 74
||||| |||||| | |||||||||||||||| |||||||||| ||||||||||| | ||
Sbjct 189 TACCTTAAACGA-CGCCGTCCTCCTCCCTCCGACCCGACGGACTTACCGAGAACTTTTTC 247
Query 75 ACGGACTAATCTCTTCTCTCGTGGAAACTCGATCGGACGAGTTCGAGTCTCCTCTCGAGC 134
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 248 ACGGACTAATCTCTTCTCTCGCGGGAACTCGATCGGACGAGTTCGAGTCTCCTCCCGAGC 307
Query 135 TGTTCCTCTGGCGAAACCTTCCGATTCGCCTTATTACATTGGGTTGGAGAGAGTCAAGAC 194
|||||| | || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 308 AGTTCCTGTAGCTAAACCTTCCGATTCGCCTTATTACATTGGGTTGGAGAGAGTCAAAAC 367
Query 195 GGATCCGTACGATCGGATTAAGAACACGGACGAGATTATTCAGCTTGGATTAGCTGAGAG 254
|||||||||||||||||||| ||||||||| | ||||||||||||||||||||| |||||
Sbjct 368 GGATCCGTACGATCGGATTACGAACACGGATGGGATTATTCAGCTTGGATTAGCCGAGAG 427
Query 255 TACACTGTGCTTTGACTTGCTACAGAGATGGATGTCTA-AGAATTTGATGGAGTCGATGA 313
||| |||||||||||||||||||||||||||||||| | |||||||||||||||| ||||
Sbjct 428 TACGCTGTGCTTTGACTTGCTACAGAGATGGATGTC-AGAGAATTTGATGGAGTCAATGA 486
Query 314 TGCAATCTGATGATGGTAAATTCGATATTAGTAGTATCGCAATGTATAAACCTATTGAAG 373
||||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||
Sbjct 487 TGCAATCTGATGATGGTGAATTTGATATTAGTAGTATCGCCATGTATAAACCTTTTGAAG 546
Query 374 GATTACTGGAACTCAGAG 391
||||||| ||||||||||
Sbjct 547 GATTACTTGAACTCAGAG 564
> AT3G02530.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr3:528574-532582 REVERSE LENGTH=1965
Length=1965
Score = 172 bits (93), Expect = 3e-42
Identities = 108/115 (94%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 448 ATAATCGCTCTTAGAAGAGCAAAGAGGAGGAACATGGAACGTTTGGTTTTGGCATGTGGT 507
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 ATAATCGCCCTTAGAAGGGCAAAGAGGAGGAACATGGAACGTTTGGTTTTGGCATGTGGT 1121
Query 508 GGAGAAGCTGTGAACTCTGTTGATGACTTGACCC-TGATTCTTTTTGTTGGGCTG 561
|||||||||||||||||||| ||||||||||||| ||||| | || |||||||||
Sbjct 1122 GGAGAAGCTGTGAACTCTGTCGATGACTTGACCCCTGATTGTCTTGGTTGGGCTG 1176
> AT5G16070.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr5:5247354-5251179 REVERSE LENGTH=1932
Length=1932
Score = 147 bits (79), Expect = 2e-34
Identities = 98/107 (92%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 456 TCTTAGAAGAGCAAAGAGGAGGAACATGGAACGTTTGGTTTTGGCATGTGGTGGAGAAGC 515
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1071 TCTTAGAAGAGCAAAGAGGAGGAACATGGAACGTTTAGTTTTGGCCTGTGGTGGAGAAGC 1130
Query 516 TGTGAACTCTGTTGATGACTTGACCC-TGATTCTTTTTGTTGGGCTG 561
|||||| |||||||| |||||||||| ||| ||| || | |||||||
Sbjct 1131 TGTGAATTCTGTTGACGACTTGACCCCTGAGTCTCTTGGATGGGCTG 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5