BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg343793

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22320.1 | Symbols:  | unknown protein; Has 7 Blast hits to ...   455    1e-127


> AT2G22320.1 | Symbols:  | unknown protein; Has 7 Blast hits to 
7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr2:9480105-9480440 FORWARD LENGTH=336
Length=336

 Score =  455 bits (246),  Expect = 1e-127
 Identities = 300/325 (92%), Gaps = 8/325 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGGGAGTGGATTATCAAGAATGGGGACTTAGTATTGAGGAATGGGAGCTTCAAGAA  60
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  16   ATGGCGGGAGTGGATTATCAAGAATGGGGACTTAGTATTGAGGAGTGGGAGCTTCAAGAA  75

Query  61   TCTGTGGTTCCGCCCCATTTGATTGCTGATGATTTTGAAGAAGAAGAACTTCGAGACA-A  119
            || || ||||||| ||||||| |||||||||||||| |||||||||||   | ||| | |
Sbjct  76   TCCGTAGTTCCGCTCCATTTGCTTGCTGATGATTTTAAAGAAGAAGAA---CAAGA-AGA  131

Query  120  Agatgat---gatgatgatgatgatgatAGAGGTTTAGATGGCTTAGCGGTTAAAGAATC  176
            |||| ||   ||  |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct  132  AGATCATCAAGACAATGATGATGATGATAGAGTTTTAGATGGCTTAGCGGTTAAACAATC  191

Query  177  TGTCACTTGTGGCATTAGAGCTTCGGTTGGGAAATTGATTGAGCAATCTATCTCACATAT  236
            ||||||| ||| |||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  192  TGTCACTCGTGACATTAGAGCTTCGGTTGGGAAATTTATTGAGCAATCTATGTCACATAT  251

Query  237  GATTGTTCACCTCAAACAGCTTAAGTTCTTAACACTTCTTCTTGAGAACTTTTTGTTTAG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  252  GATTGTTCACCTCAAACAGCTTAAGTTCTTAACACTTCTTCTTGAGAACTTTTTGTTTAC  311

Query  297  CCATGTTCTTGATTTTCTTTTGTAA  321
            |||||||||||||||||||||||||
Sbjct  312  CCATGTTCTTGATTTTCTTTTGTAA  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5