BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343837
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22810.1 | Symbols: ACS4, ACC4, ATACS4 | 1-aminocyclopropane... 2294 0.0
> AT2G22810.1 | Symbols: ACS4, ACC4, ATACS4 | 1-aminocyclopropane-1-carboxylate
synthase 4 | chr2:9717791-9719472 REVERSE LENGTH=1425
Length=1425
Score = 2294 bits (1242), Expect = 0.0
Identities = 1361/1420 (96%), Gaps = 2/1420 (0%)
Strand=Plus/Plus
Query 1 ATGGTTCTATTGTCAAGAAAAGCTACATGCAACAGCCATGGCCAAGACTCTTCGTATTTC 60
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGTTCAATTGTCAAGAAAAGCTACATGCAACAGCCATGGCCAAGTCTCTTCGTATTTC 60
Query 61 CTTGGTTGGGAAGAGTACGAGAAGAATCCTTACGACGTTATGAAGAACCCTCACGGCATT 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 61 CTTGGTTGGGAAGAGTACGAGAAGAATCCTTACGACGTTACCAAGAACCCTCAAGGCATT 120
Query 121 ATCCAAATGGGTCTTGCTGAAAATCAGTTATGCATTGATCTACTAGAGTCATGGCTTGCA 180
||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 121 ATCCAGATGGGTCTTGCGGAAAATCAGCTATGCTTTGATCTACTAGAGTCATGGCTTGCA 180
Query 181 CAAAACACAGACGCAGCCTGTTTCAAGAGAGCTGGCCAGTCTATTTTCCGGGAACTCGCT 240
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 181 CAAAACACAGACGCAGCCTGTTTCAAGAGAGATGGCCAGTCTGTTTTCCGGGAACTCGCT 240
Query 241 CTCTTTCAAGACTACCATGGCCTCTCTTCCTTCAAAAATGCCTTGGCTGATTACATGTCA 300
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 241 CTCTTTCAAGACTACCATGGCCTCTCTTCCTTCAAAAATGCCTTTGCTGATTTCATGTCA 300
Query 301 GAAAATAGAGGAAACCGAGTTTCTTATGATTCGAACAACCTTGTGCTCACTGCTGGAGCC 360
|||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 301 GAAAATAGAGGAAATCGAGTTTCTTTTGATTCAAACAACCTTGTGCTCACTGCTGGAGCC 360
Query 361 ACTTCCGCAAACGAAACTCTAATGTTTTGTCTTGCAGATCCCGACGACGCTTTCTTGCTT 420
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 ACTTCCGCAAACGAGACTCTAATGTTTTGTCTTGCAGATCCCGGTGACGCTTTCTTGCTT 420
Query 421 CCCACGCCATATTATCCAGGGTTTGATAGGGATCTAAAATGGCGAACCGGGGTTGAGATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCCACGCCATATTATCCAGGGTTTGATAGGGATCTAAAATGGCGAACCGGGGTTGAGATT 480
Query 481 GTACCAATCCAATGCTCAAGTACTAACGGGTTTTGCATAACGAAACTTACACTCGAAGAA 540
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 481 GTACCAATCCAAAGCTCAAGTACTAACGGGTTTCGCATAACGAAACTTGCACTCGAAGAA 540
Query 541 GCCTACGAGCAAGCCAAGAAGCTTAACCTAAACGTCAAAGGAATACTTATTACCAACCCA 600
|||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 541 GCCTACGAGCAAGCCAAGAAGCTTGACCTAAACGTCAAAGGAATACTCATCACCAACCCA 600
Query 601 TCTAACCCTTTGGGCACGACAACAACCCAAACCGAACTCAACATTCTATTTGATTTCATC 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTAACCCTTTGGGTACGACAACAACCCAAACCGAACTCAACATTCTATTTGATTTCATC 660
Query 661 ACTATGAATAAGAATATACATTTAGTAAGTGACGAGATATATTCAGGCACAATATTCAAC 720
|| | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 661 ACCAAGAATAAGAATATACATTTAGTAAGTGACGAGATATATTCGGGCACAGTATTCAAC 720
Query 721 TCTTCAGAATTCGTCAGCGTCATGGAGATTCTAAAAAATAATCAACTCGAAAACACCGAT 780
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCTTCAGAATTCATCAGCGTCATGGAGATTCTAAAAAATAATCAACTCGAAAACACCGAT 780
Query 781 GTTTTGAACCGTGTCCACATTGTTTATAGCTTATCTAAAGATCTAGGCCTCCCTGGTTTT 840
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 781 GTTTTGAACCGAGTCCACATTGTTTGTAGCTTATCTAAAGATCTAGGCCTCCCTGGTTTT 840
Query 841 AGAGTTGGAGCCATTTACTCCAATGACAAAGATGTCATCTCTACCGCTACAAAAATGTCG 900
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 841 AGAGTTGGAGCCATTTACTCCAATGACAAAGATGTCATCTCTGCCGCTACAAAAATGTCA 900
Query 901 AGTTTCGGCCTTGTCTCCTCCCAAACACAATACCTACTATCCTCATTATTATCTGACAAG 960
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 AGTTTCGGCCTTGTCTCCTCCCAGACACAATACCTACTATCCTCATTATTATCTGACAAG 960
Query 961 AAGTTCACTAAGAACTACCTTCGAGAGAACCAAAAACGGCTCAAGAACAGACAAAGAAAG 1020
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 961 AAGTTCACTAAGAACTACCTTAGAGAGAACCAAAAACGGCTCAAGAACAGACAGAGAAAG 1020
Query 1021 CTCGTGTTGGGTCTAGAGGCCATAGGGATCAAATGTCTGAAGAGTAATGCCGGACTCTTT 1080
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1021 CTCGTGTTGGGTCTAGAGGCCATCGGGATCAAATGTCTGAAGAGTAATGCGGGACTCTTT 1080
Query 1081 TGTTGGGTCGACATGAGACCTCTCCTTAGCTCTAAAACGTTCGAAGCGGAGATGGATCTT 1140
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1081 TGTTGGGTCGACATGAGACCTCTCCTTAGATCTAAAACGTTCGAAGCGGAAATGGATCTT 1140
Query 1141 TGGAAGAAGATTGTTTACGAAGTGAAGCTCAACATCTCTCCTGGTTCGTCGTGCCATTGT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGGAAGAAGATTGTTTACGAAGTGAAGCTCAACATCTCTCCTGGTTCGTCGTGCCATTGT 1200
Query 1201 GAAGAACCGGGTTGGTTTAGAGTTTGTTTCACGAACATGAGTGAGGAGACATTAAAGCTT 1260
|||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||
Sbjct 1201 GAAGAACCGGGTTGGTTTAGAGTTTGTTTCGCGAACATGATTGATGAGACATTAAAGCTT 1260
Query 1261 GCTTTAAAGAGATTGAAGAAGTTCGTTGATGATGGAAACTCAAAG-AGGAGTTGCCAAAA 1319
||||||||||||||||||| ||| |||||||||| |||||||| | || || ||||||||
Sbjct 1261 GCTTTAAAGAGATTGAAGATGTTGGTTGATGATGAAAACTCAA-GTAGAAGATGCCAAAA 1319
Query 1320 GAGTGAAAGCCAAAAACTAAAAGGTTTGAGGAAGAAGACGATGTCAAATGTCTCTAACTG 1379
|||| ||||| ||| |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1320 GAGTAAAAGCGAAAGACTAAACGGTTCGAGGAAGAAGACGATGTCAAATGTCTCTAACTG 1379
Query 1380 GGTTTTTCGACTATCGTTTCACGACCGTGAGGCTGAAGAA 1419
|||||| ||||||||||||||||||||||||||||| |||
Sbjct 1380 GGTTTTCCGACTATCGTTTCACGACCGTGAGGCTGAGGAA 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72338985345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5