BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343860
Length=2760
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27900.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein o... 1134 0.0
> AT2G27900.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF2451, C-terminal (InterPro:IPR019514),
Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515);
Has 316 Blast hits to 252 proteins in 92 species:
Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants
- 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
| chr2:11877430-11885491 FORWARD LENGTH=3852
Length=3852
Score = 1134 bits (614), Expect = 0.0
Identities = 728/782 (93%), Gaps = 11/782 (1%)
Strand=Plus/Plus
Query 1577 AAATTCTTCAGAGAGGACGCAGAAATCTTTGGCAACTTACAACAAGCCGCGTGTCAGTTT 1636
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1777 AAACTCTTCAGAGAGGACGCAGAAATCTTTGGCAACTTACAACAAGCCGTGTGTCAGTTT 1836
Query 1637 TGCTCTCTTCCCCAGGTGCTTCTTCAACAAGTATACATCAGTTCCTAAAGAATTATGAAG 1696
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1837 TGCTCTCTTCCCCAGGTGCTTCTTCAACAAGTATACATCAGTTCCTAAAAAATTATGAAG 1896
Query 1697 ACCTGAGCGTCTTTATCCTTGCTAGGGAAGCGTTCTGTGGATTTGAAGTTGTTGATTTTA 1756
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1897 ACCTGAGCATCTTTATCCTTGCTGGGGAAGCGTTCTGTGGATTTGAAGTTGTTGATTTTA 1956
Query 1757 GGGAGAAGCTAAAGGGTGTATGCGAAAATTATTTCACTGCATTTCATAGACAAAGCATGC 1816
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1957 GGGAGAAGCTAAAGGGTGTATGCGAAAATTATTTCACTGCATTTCATAGGCAAAGCATGC 2016
Query 1817 ATGCGCTTAAAATGGTTCTGGAGAAGGAAAGATGGACAAAATTGTCTCCTGATACTGTGC 1876
|||||||||||||||| ||||||||||| | |||||| |||||||| || ||||||||||
Sbjct 2017 ATGCGCTTAAAATGGTCCTGGAGAAGGAGACATGGACGAAATTGTCACCAGATACTGTGC 2076
Query 1877 AAGCTATTAATTTTGCTGGTCTTGTGGGGGATGGGGCTCCCCTAATTATTTCTTCCTGCA 1936
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2077 AAGCTATTAATTTTGCTGGTCTTGTGGGGGATGGGGCTCCCCTAATTATTTCTTCCCGCA 2136
Query 1937 GTGCCACTGGTTCTTCCAGATTCTCTCACTCTAATAAGTCAAATAACTCAATTGATGCAA 1996
||||| | ||||||||||||||| |||||||| ||||| ||| ||||||||||||| |||
Sbjct 2137 GTGCCTCAGGTTCTTCCAGATTCCCTCACTCTGATAAGCCAAGTAACTCAATTGATCCAA 2196
Query 1997 GTTGTAACAGGAGTGGATTTTCATATTGGCTGAAAGGTGGTAACCCCTTCTCAGCAAAGT 2056
|| | |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||
Sbjct 2197 GTGGCAACAGGAGTGGATTTTCATATTGGCTGAAAAGTGGGAACCCGTTCTCAGCAAAGT 2256
Query 2057 TAACTCACTATAGAGAAGATCAAGACTACTCCTTGGTCAATGGAGATATCTCTGGAGATT 2116
||||||||||||||||||||||||||||||||| | |||||||||| | | | |
Sbjct 2257 TAACTCACTATAGAGAAGATCAAGACTACTCCTCGATCAATGGAGA-A-----G-A--TC 2307
Query 2117 ATGAAGGGAATGACAGTATTCACGATGATGTTGTGAATTCCAAGATAAGAGAGAAAAAAC 2176
||||||||||||| |||||||| ||||||||||||||| ||||||||||||| | |||||
Sbjct 2308 ATGAAGGGAATGATAGTATTCATGATGATGTTGTGAATCCCAAGATAAGAGACATAAAAC 2367
Query 2177 GCA-CTAACGGGGGTAGTCCTGTTTCAGAAGATGAAAAGGAAGACCTTCTTGCTGACTTT 2235
||| | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2368 GCATC-AACGGAGGTAGTCCTGTTTCAGAAGATGAAAACGAAGACCTTCTTGCTGACTTT 2426
Query 2236 ATTGATGAGGATAGTCAGCTTCCAAGACGAAGTTTCACACGTAGTCATTCAAGGACTTCT 2295
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2427 ATTGATGAGGATAGCCAGCTTCCAAGACGAAGTTTTACACGTAGTCAATCAAGGACTTCT 2486
Query 2296 TCTTCATATCTCAGTACTAATGATGATTTGACAGCTCAAACGGGATCGTCCCTTTGTCTT 2355
|||||| || | ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2487 TCTTCACATTTTAGTACTAATGATGATTTGACAGCTCAAACAGGATCATCCCTTTGTCTT 2546
Query 2356 CT 2357
||
Sbjct 2547 CT 2548
Score = 560 bits (303), Expect = 2e-158
Identities = 344/364 (95%), Gaps = 2/364 (1%)
Strand=Plus/Plus
Query 2360 GTCAAGAAAATACTAATTCAGGTGGAAAAGGAGGTGCTGACTCTTTCAACCATCGTTTGA 2419
||||||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||
Sbjct 2668 GTCAAGAAAATACTAATTCAGGTGGAAAAGGAGTTTCCGACTCTTTCAATCATCGTTTGA 2727
Query 2420 AAAGCAGCTTATC-CGGGATATCACAAGAATGTGAGCAATGGATAAAACCTCACGTTTCA 2478
||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2728 AAAGCTGCTTATCAC-GGATATCACAAGAGTGTGAGCAATGGATAAAACCTCACGTTTCA 2786
Query 2479 TCATCACCATCTTCTTCACTTGCCTTTCCCAACACAGTTCATAGTCTTGCGGACGTGACT 2538
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 2787 TCATCACCATCTTCTTCACTTGCCTTTCCCAACACTGTTCATAGTCTTGCGGATGTGACT 2846
Query 2539 CCAGCAAGTCCCTTAAATACTTCTGGTCACTTATCAGGCGTATCCTTTAGTCTCAAGGAA 2598
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2847 CCAGCAAGTCCCTTAAATACTTCTGGTCACTTATCAGGCGTATCTTTTAGTCTCAAGGAA 2906
Query 2599 AGATGTGCTGCAGTGGACACTGTTTCTCTTGTGGCTAGGATATTACATAAATCAAAGGCT 2658
||||||||||| |||||||| || |||||||||||| || |||| |||||||||||||||
Sbjct 2907 AGATGTGCTGCTGTGGACACAGTATCTCTTGTGGCTCGGGTATTGCATAAATCAAAGGCT 2966
Query 2659 CATCTCCAATCAATGCTTATGTCAAGAAATGGCTCTCTAGTTGAAGACTTCTTTGGTCTA 2718
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
Sbjct 2967 CATCTCCAATCAATGCTTATGTCAAGAAATGGGTCTCTGGTTGAAGACTTCTTTGGTCAA 3026
Query 2719 CTGG 2722
||||
Sbjct 3027 CTGG 3030
Score = 531 bits (287), Expect = 2e-149
Identities = 321/338 (95%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 798 GTCAACTCTTGAAGACCTTGTTGAAGAAGGAAAGTATTGCAAGGCATTTCAAGTTCTATC 857
||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1007 GTCAAATCTTGAAGACCTTGTTGAAGATGGAAACTATTGCAAGGCATTTCAAGTCCTATC 1066
Query 858 TGAGTATTTGCAGCTGCTTGACAGTCTATCTGAGTTCTCAGCAGCCCAAGAGATGACCCG 917
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 AGAGTATTTGCAGCTGCTTGACAGTCTATCTGAGTTCTCAGCAGCCCAAGAGATGACCCG 1126
Query 918 TAGTGTTGAGGTTTGGTTAGGAAGAACTCTTCATAAGCTGGATTCACTTTTGTTGGGCGT 977
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1127 TGGTGTTGAGGTTTGGTTAGGAAGAACTCTTCATAAGCTGGATTCACTGTTGTTGGGCGT 1186
Query 978 TTGCCAGGAGTTCAAAGAAGATAGATATGTAATGGTCCTTGACGCCTATGCACTGATCGG 1037
||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1187 TTGCCAGGAATTCAAAGAAGATAGTTATGTAATGGTCCTCGACGCTTATGCACTGATCGG 1246
Query 1038 TGATGTCTCTGGTCTTGCCGAAAAGATACAGAGCTTCTTTATGCAGGAAGTTATCTCAGA 1097
||||||||||||||| || ||||||||||| || ||||||||||| ||||||||||||||
Sbjct 1247 TGATGTCTCTGGTCTCGCAGAAAAGATACAAAGTTTCTTTATGCAAGAAGTTATCTCAGA 1306
Query 1098 AACCCACTCAGTGCTAAAGACCATTGTTGGGGAGGATA 1135
|||||||||||||||||||| |||||||||||||||||
Sbjct 1307 AACCCACTCAGTGCTAAAGAGCATTGTTGGGGAGGATA 1344
Score = 496 bits (268), Expect = 7e-139
Identities = 357/398 (90%), Gaps = 14/398 (4%)
Strand=Plus/Plus
Query 1180 GATAACAGTGCTGCCACCCAATATAGTAGACTTACCTACAGCGATCTATGCCTTCAGACA 1239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1341 GATAACAGTGCTGCCACCCAATATAGTAGACTTACCTACAGCGATCTATGCCTTCAAACA 1400
Query 1240 CCAGAATCCAAGTTTAGGCAATGTCTTTTGAGAACACTAGCTGTGCTGTTTCAGTTAATA 1299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1401 CCAGAATCCAAGTTTAGGCAATGTCTTTTGAGAACACTAGCTGTGCTTTTTCAGTTAATA 1460
Query 1300 TATTCATACCATGAGATAATGAGTTTCACGCCCGAAAAGAAGATAGAAAGTTTGATCTCA 1359
|||||||||||||||||||||||||||||||| |||||| || ||||| |||| |||||
Sbjct 1461 TATTCATACCATGAGATAATGAGTTTCACGCCAGAAAAGGAGGCAGAAATTTTGGTCTCA 1520
Query 1360 CCAAGTCCTGCAACAACTCAAAAGGTTGATTTAGTGACCGGAAGTTCATGCGACCTACTG 1419
|| |||| |||||||||||||| |||||||| |||||||||||||||||| |||| || |
Sbjct 1521 CCCAGTCTTGCAACAACTCAAATGGTTGATTCAGTGACCGGAAGTTCATGTGACCCACAG 1580
Query 1420 GATGGTGGTCTCTCTTCTACCATGAGTTCGGGAAGCATACCTCCTTGTACAATTTCTGCC 1479
||||||||||| | | | | | | | |||||||||||||||||| ||||| ||
Sbjct 1581 GATGGTGGTCTAT-TGC--C---G-G---G--AAGCATACCTCCTTGTACCATTTCCGCT 1628
Query 1480 GAAGAGTCTGATGTAAGTGGAACATCCAGTTCCGTGCAGCATGT-GTCTAATATTGCAAT 1538
|||||||| |||| |||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 1629 GAAGAGTCGGATGGAAGTGGAACATCCAGTTCAGTGCAGC-TGGCGTCTAATATTGCAAT 1687
Query 1539 AGATGAGTCTAGGAATTCTGGAGATACAGTATCCAGTA 1576
|||||||||||||||||||| ||||| |||||| ||||
Sbjct 1688 AGATGAGTCTAGGAATTCTGAAGATAGAGTATCAAGTA 1725
Score = 453 bits (245), Expect = 4e-126
Identities = 325/362 (90%), Gaps = 12/362 (3%)
Strand=Plus/Plus
Query 207 TGGTCTCTTACCTTCACCCTCTTTCTCTGATCGCCCTGAGATTCCGGCACGTGCTGCAGC 266
||||||||||||||| || ||| |||| ||||| ||||||||||| ||||||||||| ||
Sbjct 443 TGGTCTCTTACCTTCTCCTTCTATCTCCGATCGTCCTGAGATTCCAGCACGTGCTGCGGC 502
Query 267 TGCTGCTGCGGTTGCTCGTGCTTTGGCGGGACTTCCTTCTGATCAGAGATTGAGTATATC 326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 AGCTGCTGCGGTTGCTCGTGCTTTGGCGGGACTTCCTTCTGATCAGAGATTGAGTATATC 562
Query 327 TTCTACTGCTACTGAGCTTAGTTCTATATATGGTAATAGACCTCTTCCTCAACAAGTTGA 386
|||||||||||||||||||| || || ||||| || |||||||||||||||||||||||
Sbjct 563 TTCTACTGCTACTGAGCTTAACTCAATTTATGGAAACAGACCTCTTCCTCAACAAGTTGA 622
Query 387 GGAGCTTGAAGA-GG-----A-G--GA---TTTTGATCCGGTAAGGCATATTTTAGAGAA 434
||||||||||| || | | || |||||||||||||||||||||||| |||||
Sbjct 623 AGAGCTTGAAGAAGGTTTCTATGAAGAGGATTTTGATCCGGTAAGGCATATTTTGGAGAA 682
Query 435 TGTGCCAGATGATCAGAGTGAGCTAGCTTATTTTGAGAAGCAGGCCACCTTGAGGTTGTT 494
|||||| |||||| | |||||| |||||||||||||||||||||| |||||||||||| |
Sbjct 683 TGTGCCGGATGATGAAAGTGAGTTAGCTTATTTTGAGAAGCAGGCTACCTTGAGGTTGGT 742
Query 495 ACAGTTGGATAGAGTGGCAGAAAATCTGTCTCACCATGTTATGGAGCATCATGAAGTAAT 554
|||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 743 ACAGCTGGATAAAGTGGCAGAAACTCTGTCTCACCATGTTATGGAGCATCATGAAGTAAT 802
Query 555 GG 556
||
Sbjct 803 GG 804
Score = 222 bits (120), Expect = 1e-56
Identities = 143/154 (93%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 646 AAGGGGATGAATTTGGTTAGAGAACTGGAAAAAGATTTGAAGATTGCAAATGTTAGCTGC 705
||||||||||||||||| |||||| |||| ||||||||||||||||||||||| | ||||
Sbjct 807 AAGGGGATGAATTTGGTAAGAGAATTGGAGAAAGATTTGAAGATTGCAAATGTCATCTGC 866
Query 706 AAGAATGGAAGACGAAATTTGACTTCATCTATGAATGAAGCTTCAGGGGATCTTATTGTA 765
|||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||
Sbjct 867 AAGAATGGAAGACGAAATTTGACTTCTTCTATGAATGAGGCTTCAAGAGATCTTATTGTA 926
Query 766 CACACTCATTCCAAAAAGAAACAAGCAT-TTCTG 798
|||||||||||||||||||||||||| | |||||
Sbjct 927 CACACTCATTCCAAAAAGAAACAAGC-TCTTCTG 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137106255219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5