BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343887
Length=2466
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37270.1 | Symbols: HMA1, ATHMA1 | heavy metal atpase 1 | ch... 1339 0.0
> AT4G37270.1 | Symbols: HMA1, ATHMA1 | heavy metal atpase 1 |
chr4:17541771-17546484 REVERSE LENGTH=2808
Length=2808
Score = 1339 bits (725), Expect = 0.0
Identities = 1203/1432 (84%), Gaps = 40/1432 (3%)
Strand=Plus/Plus
Query 995 AGGCTACAAAGGCGTGGAATGAGTCGACACTTAACAAGATTCTACAATTGACTGAGGAAG 1054
||||||||||||| |||||||| ||||| |||||||||||| |||| |||| |||||||
Sbjct 1115 AGGCTACAAAGGCATGGAATGATTCGACGCTTAACAAGATTGTACAGCTGACCGAGGAAG 1174
Query 1055 CACACTCTAATAAACCCAAACTTGAGAGATGGCTTTATGAGTTTGGTGAGATTTATAGCA 1114
|||| |||||||||||||||||| |||||||||| |||||||||| |||| ||| ||||
Sbjct 1175 CACATTCTAATAAACCCAAACTTCAGAGATGGCTGGATGAGTTTGGCGAGAATTACAGCA 1234
Query 1115 AGGTGGTGGTTGTTTTGTCAGTTGCTATTGCCTTCCTTGGTCCGTTCTTGTTCAAGTTGC 1174
|||| || |||||||||||| |||| ||||||||||| ||||| || |||||||||| ||
Sbjct 1235 AGGTTGTCGTTGTTTTGTCACTTGCAATTGCCTTCCTAGGTCCATTTTTGTTCAAGTGGC 1294
Query 1175 CGGTTCTCGGAACCACAGCATGTAGAGGATCAGTTTACAGAGCATTGGGATTTCTGGTGG 1234
| ||||| | ||| |||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 1295 CTTTTCTCAGCACCGCAGCATGTAGAGGATCTGTTTACAGAGCATTGGGACTTATGGTGG 1354
Query 1235 CGGCGTCACCGTGTGCCT-TGGCAGTTGCTCCATTGGCTTATGCTACTGCAATAAGTTCT 1293
| || ||||| |||| || |||| || ||||||||||||||||||||||| || |||||
Sbjct 1355 CCGCATCACCATGTG-CTCTGGCCGTAGCTCCATTGGCTTATGCTACTGCTATTAGTTCC 1413
Query 1294 TGTGCAAGAAAGGGAATATTGCTGAAAGGTGGGCAAGTACTGGATGCTCTAGCTTCTTGT 1353
||||||||||||||||||||||||||||||| || || || |||||||| || |||||
Sbjct 1414 TGTGCAAGAAAGGGAATATTGCTGAAAGGTGCACAGGTTCTAGATGCTCTTGCGTCTTGC 1473
Query 1354 CATACTATTGGTTTTGATAAAACCGGGACCTTAACAACCGGAGGCCTTACATGCAAAGCA 1413
|||||||||| |||||| ||||| || |||||||||||||| |||||||| || ||||||
Sbjct 1474 CATACTATTGCTTTTGACAAAACTGGTACCTTAACAACCGGCGGCCTTACTTGTAAAGCA 1533
Query 1414 ATTGAACCCATTTATGGGCATCATCAAGAAGGAAATAATGAAAGTGTAA-ATCCTTGTTG 1472
|||||||||||||||||||| | |||| ||||| |||| |||||||| | | ||| ||
Sbjct 1534 ATTGAACCCATTTATGGGCA-C--CAAGGAGGAACTAATTCAAGTGTAATAAC-TTGCTG 1589
Query 1473 TATGCCAAATTGTGAAAATGAAGCA-TTAGCTGTAGCAGCTGCTATGGAGAAAGGTACCA 1531
|| |||||||||||||| ||||| || || || || ||||| |||||||| || ||||
Sbjct 1590 CATTCCAAATTGTGAAAAAGAAGCTCTT-GCAGTTGCGGCTGCCATGGAGAAGGGCACCA 1648
Query 1532 CACATCCTATTGGAAGAGCCATGGTTGACCACAGTGTTGGG-AAGGACCTCCCTTCTGTT 1590
| ||||||||||||||||| | || || |||||||| ||| ||||| || |||||| ||
Sbjct 1649 CGCATCCTATTGGAAGAGCTGTTGTAGATCACAGTGT-GGGTAAGGATCTTCCTTCTATT 1707
Query 1591 TCTGTTGAAAGCTTTGAGTATTTTCCAGGTAGAGGCCTTTCTGCTACTGTTAACTGTATT 1650
| |||||||||||| || |||||||| |||||||||||| |||||||||| ||| || ||
Sbjct 1708 TTTGTTGAAAGCTTCGAATATTTTCCTGGTAGAGGCCTTACTGCTACTGTCAACGGTGTT 1767
Query 1651 GAGTCAGTAACCGAAG-GTAGGAAACTGCGGAAAGCGTCACTTGGTTC-AGTAGAATTCA 1708
|| ||||| | |||| | || | | | || ||||| ||||||||||| | |||| ||||
Sbjct 1768 AAGACAGTAGCTGAAGAG-AGTAGATTACGAAAAGCATCACTTGGTTCTA-TAGAGTTCA 1825
Query 1709 TTACTTCGCTCTTCGAATCACAAGATGAGTCTAGAA-AGATCAAGAATGCTGTAAATTCT 1767
|||| || || ||| |||| ||||||| |||| || |||||||| |||||||||| |
Sbjct 1826 TTACCTCACTTTTCAAATCTGAAGATGAATCTA-AACAGATCAAGGATGCTGTAAACGCG 1884
Query 1768 TCATT-GTACGGAAATGACTTTGTTCATGCTGTTCTTTCACTTGATCAAAAGGTAACATT 1826
|| || ||||||||| ||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 1885 TC-TTCGTACGGAAAGGACTTCGTTCATGCTGCTCTTTCTGTTGATCAAAAGGTAACATT 1943
Query 1827 GATTCACCTCGAGGATCAGCCTCGTCGAGAGGTATCAAAAGTTCTAACAGAACTTAAGAG 1886
|||||||||||| ||||||||||||| || ||| ||| |||| || |||||||||| ||
Sbjct 1944 GATTCACCTCGAAGATCAGCCTCGTCCAGGGGTGTCAGGAGTTATAGCAGAACTTAAAAG 2003
Query 1887 CTGGGGTAAAATGAGAATAATGATGTTAACTGGAGACCATGAGTCAAGTGCTTGGAGAGT 1946
||||| | | | || |||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2004 CTGGGCCAGACTCCGAGTAATGATGTTAACTGGGGACCATGATTCAAGTGCTTGGAGAGT 2063
Query 1947 TGCAAATGCTGTGGGTATTGAT-GAAGTCTACTGCAACCTAAAACCAGAAGACAAACTTG 2005
|||||| || ||||||||| | |||||||||||||||||||| ||||| || || ||
Sbjct 2064 TGCAAACGCAGTGGGTATT-ACCGAAGTCTACTGCAACCTAAAGCCAGAGGATAAG-TTA 2121
Query 2006 A-TCATGTCAAA-AACAT--CTCAG-AAGGTTCAGGTGGAGGAGGTTTAATCATGGTGGG 2060
| |||||| ||| ||||| ||| | ||| |||||||||| |||||| ||||| ||
Sbjct 2122 AATCATGT-AAAGAACATTGCTCGGGAAG---CAGGTGGAGG---TTTAATTATGGTAGG 2174
Query 2061 AGAAGGCATTAACGATGGTCCAGCTTTAGCAGCTGCAACCGTAGGAATTGTTCTTGCTCA 2120
|||||| ||||| |||| ||||||| ||||||||||||| || || ||||||||||||||
Sbjct 2175 AGAAGGGATTAATGATGCTCCAGCTCTAGCAGCTGCAACAGTGGGGATTGTTCTTGCTCA 2234
Query 2121 ACGTGCAAGTGCCTCGGCTATAGCCGTTGCTGATGTCTTACTTCTTCAAGACAACATCAC 2180
||| || |||||| | || || ||||||||||| ||||||| |||| ||||||||||||
Sbjct 2235 ACGAGCGAGTGCCACTGCGATTGCCGTTGCTGACATCTTACTGCTTCGAGACAACATCAC 2294
Query 2181 TGGTGTTCCTTTCTGTATCGCCAAATCCCGCCAAACAACATCACTGGTCAAGCAAAACGT 2240
|||||||| |||||| |||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 2295 CGGTGTTCCGTTCTGTGTCGCTAAATCCCGCCAGACAACATCATTGGTCAAGCAAAACGT 2354
Query 2241 GGCTATTGCGTTAACCTCGATATTCTTAGCCGCTCTTCCATCAGTTCTCGGATTTCTTCC 2300
||| |||| ||||| ||||||||||| ||||||||||| |||||| | || ||| | ||
Sbjct 2355 AGCTCTTGCATTAACATCGATATTCTTGGCCGCTCTTCCTTCAGTTTTAGGGTTTGT-CC 2413
Query 2301 C-TTGTGGTTGACGGTACTAT-TACATGAAGGCGGAACACTTCTCGTTTGCCTTAACTCG 2358
| ||||||||||||||||| | ||||||||||||| || ||||| || || || |||||
Sbjct 2414 CATTGTGGTTGACGGTACT-TCTACATGAAGGCGGGACTCTTCTGGTGTGTCTAAACTC- 2471
Query 2359 ATT-CGCAGTTTAAACGATCCATCCTGGTCATGGAAACAGGACATTGTTCAT 2409
| | || || ||||||||||||| ||||| |||||||| ||||| ||||||
Sbjct 2472 AGTACGTGGTCTAAACGATCCATCATGGTCGTGGAAACAAGACATAGTTCAT 2523
Score = 702 bits (380), Expect = 0.0
Identities = 589/689 (85%), Gaps = 17/689 (2%)
Strand=Plus/Plus
Query 276 TCAGAAGTTGTTGCTCAAG-TTCGCTAAAGCTATTGGATGGATTCGCTTAGCCAATTTCC 334
||||||| ||||| || | |||||||||||||| |||||| || | || ||||||| ||
Sbjct 438 TCAGAAGATGTTGTTC-GGATTCGCTAAAGCTATCGGATGGGTTAGATTGGCCAATTACC 496
Query 335 TCAGAGAAAATCTCCATCTTTGTTGCTCATCCGTC-GTACTCTTCCTCGCCGCAGCGGCC 393
||||||| |||| |||||||| ||||| ||| | | | | |||||||| || || | |
Sbjct 497 TCAGAGAGCATCTTCATCTTTGCTGCTCCGCCG-CTGCAATGTTCCTCGCTGCCGCCGTC 555
Query 394 TGTCCTCACTTGATGATTCCTAAACCTTACATTACA-CCAATTCAAAACTCCTTCATGAT 452
|||||| || | || |||| |||||||||||| | | |||| ||| | ||||||||
Sbjct 556 TGTCCTTACCT--TG-CTCCTGAACCTTACATTA-AGTCTCTTCAGAACGCATTCATGAT 611
Query 453 TGTTGCTTTCCCTCTTGTTGGAATTTCAGCATCTCTTGACGCACTTATGGATATAGCTGG 512
||||| ||| |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 612 TGTTGGTTTTCCTCTTGTTGGAGTTTCAGCATCTCTCGACGCACTTATGGATATAGCTGG 671
Query 513 AGGAAAAGTGAACATCCATGTTTTAATGGCA-TTAGCTGCTTTTGCTTCTGTGTTTATGG 571
||||||||||||||||||||| || |||||| || || |||||||| |||||||||||||
Sbjct 672 AGGAAAAGTGAACATCCATGTCTTGATGGCACTT-GCGGCTTTTGCATCTGTGTTTATGG 730
Query 572 GAAATGCTTTGGAAGGAGGATTACTTCTAGCCATGTTCAATCTTGCTCATATTGCTGAGG 631
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 731 GAAATGCTTTGGAAGGAGGATTGCTTCTAGCTATGTTCAATCTTGCTCATATTGCTGAGG 790
Query 632 AGTTCTTCACTAGTAGGTCCATGTTGGATGTTAAAGAGTTGAACGAGAGTAATCCAGATT 691
||||||| |||||| | || ||| ||||||| ||||| ||||| ||||||||||||||||
Sbjct 791 AGTTCTTTACTAGTCGATCAATGGTGGATGTCAAAGAATTGAAAGAGAGTAATCCAGATT 850
Query 692 CTGCATTGGTGATTGATGTGA-ATGATGAAAATGTACCAAAC-T-TCTTCGATTTGACAT 748
|||||||| |||| || || | | ||| ||||| ||||| | ||| |||||| |||
Sbjct 851 CTGCATTGTTGATCGAAGT-ACACAATGGCAATGTTCCAAATATATCT--GATTTGTCAT 907
Query 749 ACAAAAGCGTACATGTGAAGAATGTAGAAGTTGGATCCTATATTTTGGTAGGAACTGGTG 808
|||||||||| | |||| | | |||||||||||||||||| ||||||| ||||||||||
Sbjct 908 ACAAAAGCGTTCCTGTGCACAGCGTAGAAGTTGGATCCTATGTTTTGGTTGGAACTGGTG 967
Query 809 AGATTGTGCCTGTGGATTGCCAAGTCTATCAAGGTAATGCAACCATAACAATTGAGCATT 868
||||||||||||| |||||| ||||||||||||||| ||| || || ||||||||||| |
Sbjct 968 AGATTGTGCCTGTAGATTGCGAAGTCTATCAAGGTAGTGCTACAATTACAATTGAGCACT 1027
Query 869 TGACTGGGGAAGTGAAGCCATTGGAAGCAAAAGCTGGAGATAGAGTTCCTGGTGGTGCAA 928
||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1028 TGACTGGGGAAGTCAAGCCGTTGGAGGCAAAAGCTGGAGATAGAGTGCCTGGTGGTGCAA 1087
Query 929 GAACTTTGAATGGCAGAATTATTGTGAAG 957
||| |||| |||||||||| ||||| |||
Sbjct 1088 GAAATTTGGATGGCAGAATGATTGTAAAG 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122357173977
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5