BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343891
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23320.1 | Symbols: WRKY15 | WRKY DNA-binding protein 15 | c... 1404 0.0
> AT2G23320.1 | Symbols: WRKY15 | WRKY DNA-binding protein 15 |
chr2:9924933-9926372 FORWARD LENGTH=1237
Length=1237
Score = 1404 bits (760), Expect = 0.0
Identities = 898/961 (93%), Gaps = 23/961 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGTGGAGCTCATGACTCGGAATTACATCTCCGGCGTCGGAACTGATAGCTTCGCC 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 66 ATGGCGGTGGAGCTCATGACTCGGAATTACATCTCCGGCGTCGGAGCTGATAGCTTCGCC 125
Query 61 GTTCAAGAAGCAGCAGCTTCAGGACTCAAAAGTATCGAAAACTTCATCGGTTTAATGTCT 120
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 126 GTTCAAGAAGCAGCTGCTTCAGGACTCAAAAGTATCGAAAATTTCATCGGTTTAATGTCT 185
Query 121 CGTGATAGCTTTAACTCTGATCAACCCTCTTCTTCTTCCGCCTCCGCCGCCACCACCACC 180
||||||||||||||||||||||| || ||||||||||||||||||||| || || || ||
Sbjct 186 CGTGATAGCTTTAACTCTGATCAGCCATCTTCTTCTTCCGCCTCCGCCTCCGCCTCCGCC 245
Query 181 GTCGAAGATCTTGAATCAGCTCGTAACACGACGGCCGACGCGGCGGTTTCAAAGTTTAAA 240
| || |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 246 GCCGCAGATCTTGAATCAGCTCGTAACACAACGGCGGACGCGGCTGTTTCAAAGTTTAAA 305
Query 241 AGAGTCATATCTCTTC-TAGATAGAACTCGAACCGGACACGCCCGGTTTAGACGCGCTCC 299
||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 306 AGAGTCATATCTC-TCTTAGATCGAACTCGAACCGGACACGCCCGGTTTAGACGTGCTCC 364
Query 300 -G-----GTTATTTCTCCGGTTATTAATAATCAAGAAGAACCAAAACCGACACCGTTTCA 353
| ||||||||||||||| || | | ||||||||||||||| |||| ||||||||
Sbjct 365 GGTTCATGTTATTTCTCCGGTTCTT--TTA-CAAGAAGAACCAAAAACGACGCCGTTTCA 421
Query 354 ATCTCCTCTTCCTCCTCCTCCGCCGCAAATGATTCGAAAAGGTTCGTTTTCTTCATCGAT 413
||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 422 GTCTCCTC-T--TCCTCCTCCGCCGCAAATGATCCGAAAAGGTTCGTTTTCTTCATCGAT 478
Query 414 GAAAACGATTGATTTCTCATCTCTCTCCTCTGTAACAACGGAATCAGACCACCACAAGAA 473
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 479 GAAAACGATTGATTTCTCATCTCTCTCCTCTGTAACAACGGAATCAGACAACCAGAAGAA 538
Query 474 G----A-C-TCAT---CGTCCTTCTGAAACGGCGCCGTTTGGGAGTCAAACTCAAAGCCT 524
| | | |||| ||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 539 GATTCATCATCATCAACGTCCCTCTGAAACGGCGCCGTTTGCGTCTCAAACTCAAAGCCT 598
Query 525 CTCCACGACGGTTTCTTCTTTCTCAAAATCAACAAAGAGAAAATGTAACTCTGAGAATCT 584
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTCCACGACGGTCTCGTCTTTCTCAAAATCAACAAAGAGAAAATGTAACTCTGAGAATCT 658
Query 585 TCTCACCGGAAAATGCGCTTCTGCTTCTTCCTCCGGTCGTTGTCATTGCTCCAAGAAAAG 644
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 659 TCTCACCGGAAAATGCGCTTCCGCTTCTTCCTCCGGTCGTTGTCATTGCTCGAAGAAAAG 718
Query 645 AAAGATTAAACAGAGGAGAATAATTAGGGTTCCGGCGATAAGTGCTAAAATGTCCGATGT 704
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 719 AAAGATAAAACAGAGGAGAATAATTAGGGTTCCGGCGATAAGTGCAAAAATGTCCGATGT 778
Query 705 ACCTCCGGACGATTACTCATGGAGAAAATACGGACAAAAACCAATTAAAGGATCTCCACA 764
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 779 ACCACCGGACGATTATTCATGGAGGAAATACGGACAAAAACCAATTAAAGGATCTCCACA 838
Query 765 TCCAAGAGGATATTATAAGTGTAGTAGCGTAAGAGGTTGTCCAGCTCGTAAACATGTTGA 824
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 TCCAAGAGGATATTATAAGTGTAGTAGCGTAAGAGGTTGTCCAGCACGTAAACATGTTGA 898
Query 825 GAGAGCAGCTGATGATTCGTCGATGTTGATTGTTACTTATGAAGGAGATCATAATCATTC 884
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAGAGCAGCTGATGATTCGTCCATGTTGATTGTTACTTATGAAGGAGATCATAATCATTC 958
Query 885 TCTCTCCGCCGCTGATCTTGCCGGAGCCGCCGTTGCTGATCTTATTTTGGAATCGTCTTG 944
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCTCTCCGCCGCTGATCTCGCCGGAGCCGCCGTTGCTGATCTTATTTTGGAATCGTCTTG 1018
Query 945 A 945
|
Sbjct 1019 A 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5