BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343922
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23640.1 | Symbols: RTNLB13 | Reticulan like protein B13 | c... 926 0.0
> AT2G23640.1 | Symbols: RTNLB13 | Reticulan like protein B13 |
chr2:10057554-10059108 FORWARD LENGTH=687
Length=687
Score = 926 bits (501), Expect = 0.0
Identities = 584/624 (94%), Gaps = 6/624 (1%)
Strand=Plus/Plus
Query 1 ATGGCCAACGACGTGACCAAAGATCCATCACCCAAATCTGATATTGTCGAGGATA-TTAT 59
||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||
Sbjct 1 ATGGCCAACGACGTGACCAAAGATCCAACACCCAAATCTGACATTGTGGAGGATATTTA- 59
Query 60 CTTATGGAGGAGGAAGAAACTGGCCTTCTCTATACT-CTCGGTCTCAACATCGACATGGA 118
|||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 60 CTTATGGAGGAGGAAGAAACTGGCCTTCTCTACACTCCT-GGTCTCAACATCGACATGGA 118
Query 119 TTTTACTCAACTTTTATGGTTTCACTACCATAACCATTATATCGTGGATCGGCATCGCCG 178
||||||| | |||||||||||||||||||||||||||| |||| |||||||||||||| |
Sbjct 119 TTTTACTTAGCTTTTATGGTTTCACTACCATAACCATTGTATCTTGGATCGGCATCGCAG 178
Query 179 TCGTCTCTATGGTTTTCCTCTGGGGGAGTTTACTTCGCCTTCTCAGCAAAGTAGAACCGG 238
||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 179 TCGTCTCTATGATTTTCCTCTGGGGGAGTTTACTTCGCCTTCTCAGCAAGGTCGAACCGG 238
Query 239 AATTATCAGGGTTAGAAGTGTCGGAGGAGTTTGTAGTGGAGACAGTGAGGTCTTGTCGGA 298
|| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AACTATCAGGATTAGAAGTATCGGAGGAGTTTGTAGTGGAGACAGTGAGGTCTTGTCGGA 298
Query 299 TGCTAATGGAAGAAACGGTTAGATGGATGTTTCGAGTTGGTGCTGAGAGTGAATGGTTTG 358
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 TGCTAATGGAAGAAATGGTTAGATGGATGTTTCGAGTCGGTGCTGAGAGTGAATGGTTTG 358
Query 359 TTCTCGCGAGAACCGTTTTGGGTTTCTGGGTCTTGTCAAGAATTGGGAACCTTCTTGATT 418
|| |||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||
Sbjct 359 TTTTCGCGAGAACCGTTTTAGGTTTTTGGATCTTGTCAAGAATTGGGAACCTTCTCGATT 418
Query 419 TCCATACTTGTCTCTTCATCGGTTTGGTGATGGGCTTGACAGTTCCAAAGTTGTGGGACA 478
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 419 TCCATACTTGTCTCTTCATCGGTTTGGTGATGGGGTTGACGGTTCCAAAGTTGTGGGA-A 477
Query 479 -AGTACGGAGATCAAATACAGAAGCAATTGGGTAGTCTTAAAGATAAATCGAAGGGAGCG 537
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 478 GAGTACGGAGATCAAATACAGAAGCATTTGGGTAGCCTTAAAGATAAATCGAAGGGAGCG 537
Query 538 TATAATACAACTCATGAGAAGATTTTACTGATGAAGAACAAGTTACAACATGGTAGAGAA 597
|||||||||||||||||||||||||| |||||||| |||||||| ||||||| ||||
Sbjct 538 TATAATACAACTCATGAGAAGATTTTGGAAATGAAGAATAAGTTACACCATGGTACAGAA 597
Query 598 GAGAAAGAGAAAAAATCAGAGTAG 621
||||||| ||||||||||||||||
Sbjct 598 GAGAAAGTGAAAAAATCAGAGTAG 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5