BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg343922 Length=621 Score E Sequences producing significant alignments: (Bits) Value AT2G23640.1 | Symbols: RTNLB13 | Reticulan like protein B13 | c... 926 0.0 > AT2G23640.1 | Symbols: RTNLB13 | Reticulan like protein B13 | chr2:10057554-10059108 FORWARD LENGTH=687 Length=687 Score = 926 bits (501), Expect = 0.0 Identities = 584/624 (94%), Gaps = 6/624 (1%) Strand=Plus/Plus Query 1 ATGGCCAACGACGTGACCAAAGATCCATCACCCAAATCTGATATTGTCGAGGATA-TTAT 59 ||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| ||| Sbjct 1 ATGGCCAACGACGTGACCAAAGATCCAACACCCAAATCTGACATTGTGGAGGATATTTA- 59 Query 60 CTTATGGAGGAGGAAGAAACTGGCCTTCTCTATACT-CTCGGTCTCAACATCGACATGGA 118 |||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| Sbjct 60 CTTATGGAGGAGGAAGAAACTGGCCTTCTCTACACTCCT-GGTCTCAACATCGACATGGA 118 Query 119 TTTTACTCAACTTTTATGGTTTCACTACCATAACCATTATATCGTGGATCGGCATCGCCG 178 ||||||| | |||||||||||||||||||||||||||| |||| |||||||||||||| | Sbjct 119 TTTTACTTAGCTTTTATGGTTTCACTACCATAACCATTGTATCTTGGATCGGCATCGCAG 178 Query 179 TCGTCTCTATGGTTTTCCTCTGGGGGAGTTTACTTCGCCTTCTCAGCAAAGTAGAACCGG 238 ||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 179 TCGTCTCTATGATTTTCCTCTGGGGGAGTTTACTTCGCCTTCTCAGCAAGGTCGAACCGG 238 Query 239 AATTATCAGGGTTAGAAGTGTCGGAGGAGTTTGTAGTGGAGACAGTGAGGTCTTGTCGGA 298 || ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 239 AACTATCAGGATTAGAAGTATCGGAGGAGTTTGTAGTGGAGACAGTGAGGTCTTGTCGGA 298 Query 299 TGCTAATGGAAGAAACGGTTAGATGGATGTTTCGAGTTGGTGCTGAGAGTGAATGGTTTG 358 ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 299 TGCTAATGGAAGAAATGGTTAGATGGATGTTTCGAGTCGGTGCTGAGAGTGAATGGTTTG 358 Query 359 TTCTCGCGAGAACCGTTTTGGGTTTCTGGGTCTTGTCAAGAATTGGGAACCTTCTTGATT 418 || |||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |||| Sbjct 359 TTTTCGCGAGAACCGTTTTAGGTTTTTGGATCTTGTCAAGAATTGGGAACCTTCTCGATT 418 Query 419 TCCATACTTGTCTCTTCATCGGTTTGGTGATGGGCTTGACAGTTCCAAAGTTGTGGGACA 478 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | Sbjct 419 TCCATACTTGTCTCTTCATCGGTTTGGTGATGGGGTTGACGGTTCCAAAGTTGTGGGA-A 477 Query 479 -AGTACGGAGATCAAATACAGAAGCAATTGGGTAGTCTTAAAGATAAATCGAAGGGAGCG 537 ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 478 GAGTACGGAGATCAAATACAGAAGCATTTGGGTAGCCTTAAAGATAAATCGAAGGGAGCG 537 Query 538 TATAATACAACTCATGAGAAGATTTTACTGATGAAGAACAAGTTACAACATGGTAGAGAA 597 |||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||| Sbjct 538 TATAATACAACTCATGAGAAGATTTTGGAAATGAAGAATAAGTTACACCATGGTACAGAA 597 Query 598 GAGAAAGAGAAAAAATCAGAGTAG 621 ||||||| |||||||||||||||| Sbjct 598 GAGAAAGTGAAAAAATCAGAGTAG 621 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29939551612 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5