BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343930
Length=459
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23755.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 549 8e-156
> AT2G23755.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:10102787-10104029
REVERSE LENGTH=1085
Length=1085
Score = 549 bits (297), Expect = 8e-156
Identities = 416/469 (89%), Gaps = 26/469 (6%)
Strand=Plus/Plus
Query 1 ATGGCAAAACCCAGAAATCTTTTTAGGGTTTGTTCTCTTCTAATGGCGTTTTTGTTTGCT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 45 ATGGCAAAACCCAGAAATCTTTTTAGGGTTTGCTCTCTTCTAATGGCGTTTTTATTTGCT 104
Query 61 TACTCTGCATCTGTCCAGCTTAATGATCCTGATTGGTACTTTTGGTTTCCTCTCTACACA 120
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 105 TACTCTGCTTCTGTCCAGCTTAATGATCCTGATTGGTACTTTTGGTTTCCACTGTACACA 164
Query 121 CTCT-CTTGTGTAATTAATCTGATAAACTGCAGAAGAAGAATATCTAAATCAAGAAGAAT 179
|| | |||||||| ||||||| ||||||| ||||||||| | ||| ||| | | | | ||
Sbjct 165 CT-TGCTTGTGTAGTTAATCTAATAAACTACAGAAGAAG-A-ATC-AAA-CTA-ATG-AT 217
Query 180 CAAACAAATGATTGGAACAGCTCTTAGTTTAGGTCTGTTCTTGTTGGTTAAAGTGGTTGT 239
|||| ||||||||||||| || ||| ||||||||||||||||||| |||
Sbjct 218 ------GATGA---GAACAGCTCTTAGCTTGGGTGTGTTCTTGTTGGTTAAAGTTATTGC 268
Query 240 AGAAGATGTAATAACAGAGAAAGTTGGAGTCTTGTCTTTAGATCTTACTCATAGAGTGGT 299
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 269 AGAGGATGTAATAACCGAGAAAGTTGGAGTCTTGTCTTTAGATCTTACTCATAGAGTTGT 328
Query 300 TAGAGAGAAGATTGGAAGTGGTTTAGTGATAGCTTCCATGGTTCTGCAACTACAA--T-C 356
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 329 TAGAGAAAAGATTGGAAGTGGTTTAGTAATAGCTTCCATGGTTCTGCAACTACAAGCTTC 388
Query 357 TTCTTC------AGAAACCATTGACTTTGGGATGGTTGCAATTGTAGTCTTTGGTTATGG 410
|||||| | ||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 389 TTCTTCTTCTTCAAAAACCATTGACTTTGGGATGGTTGCAACTGTAATCTTTGGCTATGG 448
Query 411 ACTTCCCTTTTGGTTTTTCACAATTGAGAAAGGAGAAATCAAGATTTGA 459
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 449 ACTTCCCTTTTGGTTTTTCACAATTGAGAAAGGAGAGATCAAGATTTGA 497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21866470815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5