BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343951
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23990.2 | Symbols: ENODL11, AtENODL11 | early nodulin-like ... 645 0.0
> AT2G23990.2 | Symbols: ENODL11, AtENODL11 | early nodulin-like
protein 11 | chr2:10206835-10207911 REVERSE LENGTH=681
Length=681
Score = 645 bits (349), Expect = 0.0
Identities = 427/463 (92%), Gaps = 11/463 (2%)
Strand=Plus/Plus
Query 172 GGAGACGCTCTTT-TGTTTAAATACGATTCAAAGATGGATTCGGTGTTACAAGTAACAGA 230
||| || || ||| |||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 229 GGATACACT-TTTATGTTTAAATACGATTCAAAGATCGATTCGGTGTTACAAGTAACAAA 287
Query 231 AGAAAACTACGAAAAATGCAACACAGAGAAGCCTTTGAAAGAACACAAAGACGGATACAC 290
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 288 AGAAAACTACGAAAAATGCAACACACAGAAGCCTTTGGAAGAACACAAAGACGGATACAC 347
Query 291 AACAGTGAAACTCGATGTCTCAGGTCCTTACTTCTTCATAAGTGGAGCACCGACCGGTAA 350
||||||||||||||| |||||||| ||||||| ||||||||||||||| |||| |||||
Sbjct 348 AACAGTGAAACTCGACGTCTCAGGGCCTTACTACTTCATAAGTGGAGCTCCGAGTGGTAA 407
Query 351 CTGTGCTAAAGGTGAGAAAGTGACTGTCGTGGTTCAGTCACCTAACCACCAGCCCATGCC 410
|||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 408 CTGTGCTAAAGGTGAGAAAGTGACTGTCGTGGTTCAGTCACCTAACCACC--C--A---- 459
Query 411 AAAGCCAGGACCAGCGGCTGTTACGCCCACTATTCCTCCAAAGCCATCTACTACTTCGGC 470
|| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 460 AA-GCCAGGACCAGCCGCTGTTACGCCCACTCTTCCTCCAAAGCCATCTACTACTCCGGC 518
Query 471 TGCTCCAGCGCCAGCTCCACCCACTCCTTCTCCAAAGTCATCTACTTCTATGCCGGCTCC 530
||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 519 TGCTCCAGCCCCAGCTCCACCCACTCCTTCTCCAAAGTCATCTACTTCTACGATGGCTCC 578
Query 531 TGCGCCAGCTCCGGCCAAGAGCTCTGCTGTTGGGTTGGTTGCTGGAACTGGCATCTTCTG 590
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 579 GGCGCCAGCTCCGGCCAAGAGCAGTGCTGTTGGGTTGGTTGCTGGAAATGGCATCTTTTG 638
Query 591 GGCCTCGACTCTTGTTGCTGTCATTGGGCTTGCTTTCGTTTAA 633
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct 639 GGCCTCGACTCTTGTTGCTGTCATTGGGCTTGCTTTCGCTTAA 681
Score = 268 bits (145), Expect = 3e-71
Identities = 176/190 (93%), Gaps = 5/190 (3%)
Strand=Plus/Plus
Query 1 ATGGCGTCTTTGATTGA-CATTGTGCCCCTAATGTTTCTTTTATTTACCACATTCTACCA 59
|||| |||||||||| | ||||||| || || |||||||||||||||| |||||||||||
Sbjct 1 ATGGTGTCTTTGATT-AGCATTGTGTCCGTAGTGTTTCTTTTATTTACAACATTCTACCA 59
Query 60 CTTTGGTGAGGCTAGAATCATTGAA-GTGGGAGGATCATTGGACGCATGGAAGGTTCCAG 118
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 60 CTTTGGTGAGGCTAGAATCATT-AATGTGGGAGGATCATTAGACGCATGGAAGGTTCCAG 118
Query 119 AATCTCCCAACCACACTCTCAGCCATTGGGCTGAGTCCGTCCGGTTCCAAGTGGGAGACG 178
|||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 119 AATCTCCCAACCACTCTCTCAACCATTGGGCTGAGTCCGTCCGGTTCCAAGTCGGAGACG 178
Query 179 CTCTTTTGTT 188
|||||| |||
Sbjct 179 CTCTTT-GTT 187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5