BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343953
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24010.1 | Symbols: scpl23 | serine carboxypeptidase-like 23... 688 0.0
AT4G30610.1 | Symbols: BRS1, SCPL24 | alpha/beta-Hydrolases sup... 207 8e-53
AT2G24000.1 | Symbols: scpl22 | serine carboxypeptidase-like 22... 193 2e-48
> AT2G24010.1 | Symbols: scpl23 | serine carboxypeptidase-like
23 | chr2:10214714-10217542 FORWARD LENGTH=1323
Length=1323
Score = 688 bits (372), Expect = 0.0
Identities = 411/429 (96%), Gaps = 5/429 (1%)
Strand=Plus/Plus
Query 1 ATGTCAAGATTTCCTCTGTACCAATATAGAGATTTCTACATTGCTGGTGAAAGCTACGCT 60
||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 439 ATGTCGAGATTTCCTCAGTACCAATATAGAGATTTCTACATTGTTGGTGAAAGCTACGCT 498
Query 61 GGTCATTATGTTCCTCAGCTTGCCAAAAAGATCCATCTCTACAACAAAGCTTTAAACAAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 499 GGTCATTATGTTCCTCAGCTTGCCAAAAAGATCCATCTCTACAACAAAGCTTTCAACAAT 558
Query 121 ACACCCATCATTAACCTCAAAGGATTCATGGTCGGAAATGGAGATATGGACAAGCATTAC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 559 ACACCCATCATTAACCTCAAAGGATTCATGGTGGGAAATGGAGATATGGACAAGCATTAC 618
Query 181 GACAGATTAGGAACCGCCATGTATGCGTGGTCACACGCAATGATCTCTGACAAATCTTAC 240
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 619 GACAGATTAGGAGCCGCCATGTATGCGTGGTCACACGCAATGATCTCTGACAAAACTTAC 678
Query 241 AAGTCTATCCTCAAACACTGCAGCTTCAC-GCCAGATAAAACCTCGGACAAGTGCAATTG 299
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 679 AAGTCTATCCTCAAACACTGCAGCTTCACTGCG-GATAAAACCTCGGACAAGTGCAATTG 737
Query 300 GGCACTCTACTTCGCCTACATTGTTGAGTTTGGCAAAGTCAATGGGTACAGCATCTACTC 359
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 738 GGCACTCTACTTCGCCTACA--GA-GAGTTTGGCAAAGTCAATGGGTACAGCATCTACTC 794
Query 360 AGCCTCATGTGTACATCAAACCAACCAGACCAAGTTTCTGCATGGACGGCTTTTGGCAGA 419
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 795 ACCCTCATGTGTACATCAAACCAACCAGACCAAGTTCCTGCATGGACGGCTTTTGGTAGA 854
Query 420 GGAATACGA 428
|||||||||
Sbjct 855 GGAATACGA 863
Score = 364 bits (197), Expect = 5e-100
Identities = 219/230 (95%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 434 TGGTTCCAGTGACTGGGACTCGACTTGCCCTCAACAAACTCAATCTTCCTGTGAAAACTC 493
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1088 TGGTTCCAGTGACTGGGACTCGACTTGCCCTCAGTAAACTCAATCTTCCGGTGAAAACTC 1147
Query 494 GCTGGTACCCTTGGTACTCCGAGAAGCAGGTGGGAGGATGGACAGAGGTATATGAGGGGC 553
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1148 CCTGGTACCCTTGGTACTCCGAAAAGCAGGTGGGAGGATGGACAGAGGTATATGAGGGGC 1207
Query 554 TTACCTTTGCGACGGTAAGAGGGGCGGGCCACGAAGTGCCGGTGTTGCAACCAGAGCGTG 613
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1208 TTACCTTTGCGACGATAAGAGGGGCGGGCCACGAAGTGCCGGTGTTGCAACCCGAGCGTG 1267
Query 614 CTCTCACTCTTTTACGGTCCTTCTTGGCCGGCAAAGAACTTCCAAGATCT 663
|||||||||||||| | || ||||||||||||||||| ||||||||||||
Sbjct 1268 CTCTCACTCTTTTAAGATCGTTCTTGGCCGGCAAAGAGCTTCCAAGATCT 1317
> AT4G30610.1 | Symbols: BRS1, SCPL24 | alpha/beta-Hydrolases superfamily
protein | chr4:14944129-14948605 FORWARD LENGTH=1702
Length=1702
Score = 207 bits (112), Expect = 8e-53
Identities = 219/269 (81%), Gaps = 13/269 (5%)
Strand=Plus/Plus
Query 7 AGATTTCCTCTGTACCAATATAGAGATTTCTACATTGCTGGTGAAAGCTACGCTGGTCAT 66
|||||||||| ||| |||| ||||| ||||| || |||||||||||||| || || |||
Sbjct 586 AGATTTCCTCAATACAAATACAGAGACTTCTATATCGCTGGTGAAAGCTATGCCGGGCAT 645
Query 67 TATGTTCCTCAGCTTGCCAAAAAGATCCATCTCTACAACAAAGCTTTAAACAACACACCC 126
|||||||||||||||||||||||||| || ||||||||||||||| ||| || |
Sbjct 646 TATGTTCCTCAGCTTGCCAAAAAGATAAATGACTACAACAAAGCTTTCTCCAA-AC-CA- 702
Query 127 ATCATTAACCTCAAAGGATTCATGGTCGGAAATGGAGAT-ATGGACAAGCATTACGACAG 185
|||||||| |||||||||||| |||| ||||||| || | | |||||| || ||||||||
Sbjct 703 ATCATTAATCTCAAAGGATTCTTGGTGGGAAATGCAG-TGACGGACAATCAGTACGACAG 761
Query 186 -ATTAGGAACCGCCA-TGTA-TGCGTGGTCACACGCAATGATCTCTGACAAAT-CTTACA 241
|| |||||| | | | || || |||| | |||||||| ||||| |||||| || |||
Sbjct 762 TAT-AGGAACAGTAACT-TACTG-GTGGACTCACGCAATTATCTCCGACAAAAGCT-ACA 817
Query 242 AGTCTATCCTCAAACACTGCAGCTTCACG 270
|||| ||||||||| |||||| ||||||
Sbjct 818 AGTCAATCCTCAAATACTGCAATTTCACG 846
> AT2G24000.1 | Symbols: scpl22 | serine carboxypeptidase-like
22 | chr2:10209475-10214042 FORWARD LENGTH=1395
Length=1395
Score = 193 bits (104), Expect = 2e-48
Identities = 190/231 (82%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 437 TTCCAGTGACTGGGACTCGACT-TGCCCTCAACAAACTCAATCTTCCTGTGAAAACTCGC 495
|||||||||| | ||||||| | | |||| |||||| ||||||| ||||||||||||
Sbjct 1163 TTCCAGTGACAGCGACTCGA-TATTCCCTTGGCAAACTGAATCTTCGAGTGAAAACTCGC 1221
Query 496 TGGTACCCTTGGTACTCCGAGAAGC-AGGTGGGAGGATGGACAGAGGTATATGAGGGGCT 554
||||||||||||||||||| ||| | |||| |||||| | ||||| ||||| ||||||||
Sbjct 1222 TGGTACCCTTGGTACTCCG-GAAACCAGGTAGGAGGACGAACAGAAGTATACGAGGGGCT 1280
Query 555 TACCTTTGCGACGGTAAGAGGGGCGGGCCACGAAGTGCCGGTGTTGCAACCAG-AGCGTG 613
|||||||| |||||||||||||||||| ||||| ||||| | || ||||| | | |||
Sbjct 1281 TACCTTTGTGACGGTAAGAGGGGCGGGGCACGAGGTGCCATTCTTCCAACC-GCAAAGTG 1339
Query 614 CTCTCACTCTTTTACGGTCCTTCTTGGCCGGCAAA-GAACTTCCAAGATCT 663
| || | ||||||| | || |||||||| || ||| || ||| ||||||||
Sbjct 1340 CGCTTATTCTTTTAAGATCATTCTTGGCTGG-AAATGAGCTTTCAAGATCT 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5