BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343972
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24180.1 | Symbols: CYP71B6 | cytochrome p450 71b6 | chr2:10... 2261 0.0
AT3G26295.1 | Symbols: CYP71B33 | putative cytochrome P450. | c... 126 5e-28
> AT2G24180.1 | Symbols: CYP71B6 | cytochrome p450 71b6 | chr2:10281847-10283735
FORWARD LENGTH=1701
Length=1701
Score = 2261 bits (1224), Expect = 0.0
Identities = 1417/1513 (94%), Gaps = 2/1513 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCTTTTCTCCATCCCCATCTCCACTGAGTTGCTTCCATGGCTTCTCCTACTTTTG 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 44 ATGTCTCTTTTCTCCTTCCCCATCTCCACTGAGTTGCTTCCATGGCTTCTCCTACTTTTG 103
Query 61 ATTCCTCCACTTCTTATCTTCTTTCTTCTTCGTTCCCCTAAAAATCTTCCACCAGGTCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 ATTCCTCCACTTCTTATCTTCTTTCTTCTTCGTTCCCCTAAAAATCTTCCACCAGGTCCA 163
Query 121 TCAAGATTACCTCTCTTAGGAAACATCCACCAGCTCGGATCTCTTCCTCACCGCACTCTC 180
||||||||||| |||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 164 CCAAGATTACCTATCTTAGGAAACATCCACCAGCTCGGATCCCTCCCTCACCGCAGTCTC 223
Query 181 AGAGATCTCTCTCTCAAATATGGCCCCGTCATCACCGTCTATCTCGGAAGCGTCCGGACG 240
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 224 AGAGATCTCTCTCTCAAATATGGCCCAGTCATCACCGTCTATCTCGGCAGCGTCCGTACC 283
Query 241 GTGGTTGTACACTCTCCGGAGACGGCGGAGGAAGTTCTAAAACTTCATGACTCCGAGTGT 300
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 284 GTGGTTGTTCACTCTCCGGAGACGGCGGAGGAAGTTCTAAAACTTCACGACTCCGAGTGT 343
Query 301 TGTACTCGTCCAAAGCTTTCTATCACCAAAAGCTTTTTCTACGATGGACTTGGTCTAGGG 360
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 344 TGTACTCGTCCAAAGCTATCTATCACCAAAAGCTTTTTCTATGATGGACTTGGTCTAGGG 403
Query 361 TTTACTCAGTGGGGTGATTACTACAGAGATGTACGTAAACTTTGTGTTCTTGAACTTTTT 420
|||||| | ||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 404 TTTACTAAATGGGGTGATTACTACAGAGATGTGCGGAAACTCTGTGTTCTTGAACTTTTC 463
Query 421 TCCGTTAAACGAGCTAACTCGTTTAGGAACTTGAGAGAGGAGGAGCTGATTCGACTCGTT 480
|||||||||||||| |||||||| ||||| | |||||||||||||||| ||||||||||
Sbjct 464 TCCGTTAAACGAGCCAACTCGTTCCGGAACATAAGAGAGGAGGAGCTGAGTCGACTCGTT 523
Query 481 GACTCGTTATCTGACTCGGCGGCGTCTGGATCTTCCGTTGATCTCACGGCGAAGTTGGCC 540
||||||| |||||||||||| | ||||||||||||||||| || || || || |||||
Sbjct 524 AACTCGTTTTCTGACTCGGCGTCATCTGGATCTTCCGTTGACCTTACCGCAAATTTGGCT 583
Query 541 AAGTTCGTCGCGAGCTTTACGTGTCGAATGGCGTTTGGATTGAGTTTTCAAGGAAGTGGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AAGTTCGTCGCGAGCTTTACGTGTCGAATGGCGTTTGGATTGAGTTTTCAAGGAAGTGGA 643
Query 601 ATTGATAATGAGAGGTTTATGGAGGTGTTCACGGAGGCGAACAGAGTCATCGGAAAAATT 660
|| ||||| |||| |||| ||||| |||||||||||||||||||||| ||||||||| ||
Sbjct 644 ATGGATAACGAGACGTTTCTGGAGCTGTTCACGGAGGCGAACAGAGTGATCGGAAAA-TT 702
Query 661 T-CGGCGGCGGATATTTTCCCTGGGTTTGGTTGGATCTTGGATCGGATCAATGGTCTTGA 719
||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 703 CGCGGCGGCGGATATATTCCCCGGGTTTGGCTGGATCTTGGATCGGATCAGTGGTCTTGA 762
Query 720 TTCTAGCCGGAGGAAGAGTTTTCAAGATCTTGATACGTTTTATCAGAAAGCTATTGTTGA 779
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 763 TTCTAGCCGGAGGAAGAGTTTTCAAGATCTTGATACGTTTTACCAGAAAGCTATTGTTGA 822
Query 780 TCATCGAGAAAAGAAGAAAACTGAAGACCGTGAAGATTTGATTGACGTCTTGCTCAAGTT 839
||||| || ||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 823 CCATCGGGAGAAGAAGAAAACTGAAGACCGTGAAGATCTCATTGACGTCTTGCTCAAGTT 882
Query 840 ACAGAGTCAAGAAACCAAACTTGGTTCTTCAAGAATCACTGATACACATATCAGAGCCAT 899
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 883 ACAGAGTCAAGAAACCAAACTTGGTTCTTCAAGAATCACCGATACACATATCAGAGCTAT 942
Query 900 TCTTATGGATTTGTTTGTAGCAGGAGTAGACACATCTGTTATCACTATGGATTGGACATT 959
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 943 TATTATGGATTTGTTTGTAGCAGGAGTAGACACATCTGTTATCACTTTGGATTGGACAAT 1002
Query 960 GGCAGAGCTTGCAAGACATCCAAGAGTGATGAAAAAAGTACAAGCTGAGATTCGTGAACT 1019
|||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 1003 GGCAGAGCTTTCAAGACATCCAAGAGTAATGAAGAAAGTACAAGCCGAGATTCGTGAACA 1062
Query 1020 CATAGGAGACAAAGGGATAGTCACGTATGATGATCTTGAGGGTCTAGTCTACATGAAAAT 1079
| ||||||||||||| ||||| || || |||||||| |||| ||||||||||||||||||
Sbjct 1063 CGTAGGAGACAAAGGTATAGTGACATACGATGATCTCGAGGCTCTAGTCTACATGAAAAT 1122
Query 1080 GGTGATCAAGGAGACTTGGAGATTACACGCACCAAGTCCGATTCTGATTCCAAGAGAAGC 1139
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1123 GGTGATCAAGGAGACTTGGAGGTTACACGCACCGAGTCCTATTCTGATTCCAAGAGAAGC 1182
Query 1140 AATGACTAACTTCAAGATCAAGGGTTACAACATTTACCCTGGAACGCGTATTCATGTCAA 1199
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1183 AATGACTAACTTCAAGATCAAGGGTTATGATATTTACCCTGGAACGCGTATTCATGTCAA 1242
Query 1200 TGCATGGGCGATTGGGCGTAACCCTGATGTATGGAAGGATCCTGATGAGTTTATCCCAGA 1259
||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1243 TGCTTGGGCTATTGGACGTAACCCTGATGTATGGAAGGATCCTGATGAGTTTATACCAGA 1302
Query 1260 GAGATTTGTGGATAGCAATGTGGATACTAAAGGGACAAGTTTTGAGCTATTGCCGTTTGG 1319
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1303 GAGATTTGTTGATAGCAATGTGGAAACTAAAGGGACAAGTTTTGAGCTGTTGCCGTTTGG 1362
Query 1320 GAGTGGACGAAGAGGTTGTCCTGCGATGTACTTGGGATTAAGTACGGTGGAGTACACACT 1379
||||||||| ||||||||||| || |||||| |||||||||||||||||||||||||| |
Sbjct 1363 GAGTGGACGCAGAGGTTGTCCCGCAATGTACGTGGGATTAAGTACGGTGGAGTACACATT 1422
Query 1380 GGCGAATCTTTTGTATCATTTTGATTGGAAAGCGACGGAGGAAGTGAGTATTGAAGAAGC 1439
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1423 GGCGAATCTTTTGTATCATTTTGATTGGAAAGCGACTGAGGAAGTGAGTGTTGAAGAAGC 1482
Query 1440 ACCTGGTCTCACTAGCCACAGGAAGCATCCTCTTCACCTTATTCCAGTTAGTGCCATCAA 1499
|||||||||||||||||||||||||||||||||||||||| |||| |||| || ||||||
Sbjct 1483 ACCTGGTCTCACTAGCCACAGGAAGCATCCTCTTCACCTTGTTCCTGTTAATGTCATCAA 1542
Query 1500 CCGCAAGCTTTAG 1512
|||||||||||||
Sbjct 1543 CCGCAAGCTTTAG 1555
> AT3G26295.1 | Symbols: CYP71B33 | putative cytochrome P450. |
chr3:9636701-9638348 REVERSE LENGTH=1503
Length=1503
Score = 126 bits (68), Expect = 5e-28
Identities = 261/352 (74%), Gaps = 22/352 (6%)
Strand=Plus/Plus
Query 1069 TACATGAAAATGGTGATCAAGGAGACTTGGAGATTACA-CGCACCAAG-TCCGATTCTGA 1126
||| |||||| |||||| || || || ||||| |||| | | || || || ||||
Sbjct 1051 TACCTGAAAACGGTGATTAAAGAAACATGGAGGCTACATC-CTCC-AGCACCTCTTCTTC 1108
Query 1127 TTCCAAGAGAAGCAATGACTAACTTCAAGATCAAGGGTTACAAC-AT-TTACCCTGGAAC 1184
|||||||||||| |||| || | || ||||||| || ||| || || |||| | ||
Sbjct 1109 TTCCAAGAGAAGTAATGTCTGAGTTTGAGATCAACGGCTAC-ACGATGCAACCCAAG-AC 1166
Query 1185 GC-GTATTCATGTCAATGCATGGGCGATTGGGCGT-AACCCTGATGTATGGAAGGATCCT 1242
| | ||||||||||||| |||||| || || ||| | ||| || ||||| |||||
Sbjct 1167 ACAG-ATTCATGTCAATGTATGGGCTATCGGACGTGATCCC-AATACCTGGAAAGATCCC 1224
Query 1243 GATGAGTTTATCCCAGAGAGATTTGTGGATAGCAATGTGGATACTAAAGGGACA-AGTTT 1301
|| |||||| | |||||||| ||| | ||||| ||| | ||||| ||| ||||| | ||
Sbjct 1225 GAGGAGTTTCTTCCAGAGAGGTTTATTGATAGTAATATTGATAC-AAAAGGACAGAACTT 1283
Query 1302 TGAGCTATTGCCGTTTGGGA-GTGGACGAAGAG-GT-TGTCCTGCGATGTAC-TTGGGAT 1357
|||| | | |||||| ||| | || | | ||| | |||||||| |||||| | ||||
Sbjct 1284 TGAGTTGCTACCGTTT-GGAGGCGG-C-AGGAGAATGTGTCCTGCAATGTACATGGGGA- 1339
Query 1358 TAAGTACGGTGGAGTACACACTGGCGAATCTTTTGTATCATTTTGATTGGAA 1409
|| | |||||||| || |||||||||||||||||||||||||||||
Sbjct 1340 CAACAATGGTGGAGTTTGGTCTTGCGAATCTTTTGTATCATTTTGATTGGAA 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74598009870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5