BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343982
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24220.1 | Symbols: ATPUP5, PUP5 | purine permease 5 | chr2:... 1735 0.0
> AT2G24220.1 | Symbols: ATPUP5, PUP5 | purine permease 5 | chr2:10300116-10301787
FORWARD LENGTH=1258
Length=1258
Score = 1735 bits (939), Expect = 0.0
Identities = 1068/1131 (94%), Gaps = 6/1131 (1%)
Strand=Plus/Plus
Query 1 ATGACAAGTTTCAAAGACGATAATCCCCAGTCAAATTTATCAGTCAGACTACTAATGGAT 60
||||||| |||||||||||||||||| |||||||| || | | |||||||||||||||||
Sbjct 24 ATGACAACTTTCAAAGACGATAATCCTCAGTCAAA-TT-T-A-TCAGACTACTAATGGAT 79
Query 61 GAAACAACAGAACGCCCATCTGTTTCATTTTCATATTCAAATTGGATGTCTAATGTCAAG 120
|||||||||||||||||| ||||||| |||||||||||||||||||| || || ||||
Sbjct 80 GAAACAACAGAACGCCCAACTGTTTCGTTTTCATATTCAAATTGGATATCAAACATCAAA 139
Query 121 AAATCGACACGAGAAGCTTACGAAGCAAAGCCCTTTTCACATTGGATACTCTTGCTCTTC 180
||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 140 AAATCAACACGAGAAGCTTACGAAGCAAAGCCCTTTTCACATTGGATTCTTTTGTTCTTC 199
Query 181 AGTGGTGCGGCAATGCTCATAGCTTTCCCGGCTTCTAGTTTACTGTCTCGTCTTTACTTT 240
||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct 200 AGTGGTGCGGCAATGCTCATAGCTTTCCCAGCTTCTAGTCTACTCTCTCGTCTTTACTTC 259
Query 241 TCCAATGGTGGTAAAAGTAAATGGATAATCTCTTGGGTTGCTGTTGCTGGATGGCCAATC 300
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 260 TCCAATGGTGGTAAAAGCAAATGGATCATTTCTTGGGTTGCTGTTGCTGGATGGCCAATC 319
Query 301 ACTTGTCTCATTTTACTTCCTACATATATCTTTCAAAAGATTAAACCAACACCCCTCAAT 360
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 320 ACTTGTCTTATTTTACTTCCTACATATATCTTTCAAAAGATCAAACCAACACCTCTCAAT 379
Query 361 GCAAAGCTTGTTCTCTCTTATGTCGTGCTTGGTTTCTTGAGTGCTGCAGATAACCTTATG 420
|||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 380 ACAAAGCTTGTTCTCTCTTATGTTGTGCTCGGTTTCTTGAGTGCTGCAGACAACCTTATG 439
Query 421 TATGCTTATGCCTACGCGTATCTCCCTGCATCGACTTCTTCTCTACTAGCATCTTCGTCG 480
|||||||||||||| ||||| |||||||| |||||||||||||| || || |||||||||
Sbjct 440 TATGCTTATGCCTATGCGTACCTCCCTGCTTCGACTTCTTCTCTTCTGGCTTCTTCGTCG 499
Query 481 CTTGCCTTCTCTGCTTTGTTTGGCTATCTCATTGTTAAAAACCCGCTGAATGCTTCAGTT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 500 CTTGCCTTCTCTGCTTTGTTTGGCTATCTCATTGTTAAAAACCCGCTGAATGCTTCGGTT 559
Query 541 ATCAACTCCATTGTGATAATAACCGGTGCTATGGCTATAATAGCGCTGGATTCAAGCTCT 600
||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 ATCAACTCCATCGTGGTTATAACCGGTGCTATGGCTATAATAGCGCTGGATTCAAGCTCT 619
Query 601 GATCGGTATAGTTATATAAGCAACAGCCAATATTTTGCAGGTTTCTTTTGGGACATAATG 660
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 620 GATCGGTACAGTTATATAAGCAACAGTCAATACTTTGCAGGTTTCTTTTGGGACATAATG 679
Query 661 GGATCTGCGCTTCACGGGCTCATTTTCGCGTTATCCGAGCTTCTCTTTGTGAAACTGCTT 720
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 680 GGATCTGCGCTTCACGGGCTCATTTTCGCGTTATCTGAGCTTCTCTTTGTGAAATTGCTT 739
Query 721 GGAAGAAGGTCCTTTCATGTTGCTTTGGAGCAGCAAGTCATGGTTTCGCTCATAGCTTTC 780
||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 740 GGAAGAAGGTCTTTTCACGTTGCTTTGGAGCAGCAAGTCATGGTTTCTCTCACAGCTTTT 799
Query 781 GCGTTTACCACTCTTGGGATGGTTGTGAGCAACGATTTCCAAGGGATGAGTCAGGAAGCT 840
|||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 800 GCGTTTACCACTATTGGGATGGTTGTGAGCAATGATTTCCAAGGGATGAGTCACGAAGCT 859
Query 841 AAGAGTTTCAAAGGTGGCGAGTCTCTGTACACTCAGGTTCTTGTCTGGAGTGCAGTCACG 900
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 AAGAGTTTCAAAGGCGGTGAGTCTCTGTACACTCAGGTTCTTGTCTGGAGTGCAGTCACG 919
Query 901 TTTCAACTGGGTGTTCTTGGGGCGACCGCGGTCTTGTTTCTGGCATCCACAGTCATGGCA 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 TTTCAACTGGGTGTTCTTGGGGCGACCGCGGTCTTGTTTCTGGCATCCACAGTCATGGCT 979
Query 961 GGAGTCCTTAACGCCGTGAGAGTTCCCATCACGAGCATAGCCGCTGTTATATTGATGCAT 1020
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 980 GGAGTCCTTAACGCTGTGAGAGTTCCCATCACGAGCGTAGCCGCTGTTATATTGATGCAT 1039
Query 1021 GATCCAATGAGTGGCTTCAAAATCCTGTCTTTGGTCCTT-ACGTTCTGGGGATTCAGCTC 1079
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1040 GATCCAATGAGTGGCTTCAAAATCCTGTCTTTGGTT-TTGACGTTCTGGGGATTCAGCTC 1098
Query 1080 TTATATCTACGGGAGCTCGAGCTCAAACTCAAGTACTCAAGCTTCCTCTTC 1130
|||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1099 TTATATCTACGGGAGCTCGAGCTCGAACTCAAGTACTCAAGCTTCCTCTTC 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5