BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343993
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24280.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2459 0.0
> AT2G24280.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:10333284-10337128 FORWARD LENGTH=3024
Length=3024
Score = 2459 bits (1331), Expect = 0.0
Identities = 1431/1480 (97%), Gaps = 4/1480 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGCTTGTTTGTGTCTTGTGTTCCTGTTCTTCTCTATTGTTGCAGAAGCAACGTAT 60
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1339 ATGTCTGCCTGTTTGTGTCTTGTTTTCCTGTTCTTCTCTATTGTTGCAGAAGCAACGTAT 1398
Query 61 TCTCCAGGAGGTTTCCACCATCTTTCTTCTCTAAGAC-AACAGAAAAAGGCT-TCCAAGT 118
||||||||||||||||||||||||||||||||||||| || |||| |||| | |||||||
Sbjct 1399 TCTCCAGGAGGTTTCCACCATCTTTCTTCTCTAAGACTAA-AGAAGAAGG-TGTCCAAGT 1456
Query 119 CAAAGCAAGAGTTACCTTTTGAGACTCGTTACTTCCCTCAAAATCTTGACCACTTCAGTT 178
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1457 CAAAACATGAGTTACCTTTTGAAACTCGTTACTTCCCTCAAAATCTTGACCACTTCAGTT 1516
Query 179 TCACACCAGAGAGCTACACAGTCTTCCACCAGAAGTACCTCATCAACAGCCGTTTCTGGC 238
|||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1517 TCACACCAGACAGCTACAAAGTCTTCCACCAGAAGTACCTCATCAACAACCGTTTCTGGC 1576
Query 239 GCAAAGGTGGCCCCATCTTTGTCTACACCGGAAATGAAGGAGACATTGACTGGTTTGCTT 298
| |||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 1577 GAAAAGGTGGTCCCATCTTTGTTTACACTGGAAATGAAGGAGACATCGACTGGTTTGCTT 1636
Query 299 CCAACACCGGTTTCATGTTGGATACTGCTCCCAAGTTCCAGGCTCTTCTTGTTTTCATTG 358
||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1637 CCAACACCGGTTTCATGCTGGATATTGCTCCCAAGTTCCGGGCTCTTCTTGTTTTCATTG 1696
Query 359 AACACCGGTTCTATGGAGAATCAACGCCATTTGGAAAGAAGTCGCATAAGTCGGCTGAGA 418
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1697 AACACCGGTTCTATGGAGAATCAACGCCATTTGGGAAGAAGTCGCATAAGTCAGCTGAGA 1756
Query 419 CATTGGGTTACCTAAGCTCTCAGCAAGCGTTGGCTGATTATGCGATCCTGATAAGAAGCT 478
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1757 CATTGGGTTACCTAAACTCTCAGCAAGCGTTGGCTGATTATGCAATCCTGATAAGAAGCT 1816
Query 479 TGAAGCAGAATCTATCGTCTGAGGCATCACCTGTGGTTGTCTTTGGTGGCTCTTATGGTG 538
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1817 TGAAGCAGAATCTATCGTCTGAGGCATCGCCTGTGGTTGTCTTTGGTGGCTCTTATGGTG 1876
Query 539 GAATGCTTGCAGCGTGGTTCAGGCTCAAGTATCCCCACATAACAATCGGTGCATTGGCAT 598
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1877 GAATGCTTGCAGCGTGGTTCAGACTCAAGTATCCCCACATAACAATCGGTGCATTGGCAT 1936
Query 599 CCTCCGCTCCAATACTTCATTTCGATAACATTGTGCCATTGACGAGCTTCTATGATGCCA 658
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1937 CCTCCGCTCCAATACTTCATTTCGATAACATTGTACCATTGACAAGCTTCTATGATGCCA 1996
Query 659 TTTCTCAGGATTTTAAGGATGCAAGTATTAATTGTTTCACAGTCATCAAGAAAAGCTGGG 718
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1997 TTTCTCAGGATTTTAAGGATGCAAGTATTAATTGTTTCAAAGTCATCAAGAGAAGCTGGG 2056
Query 719 AAGAGCTAGAGGCAGTTTCAACTATGAAAAATGGCTTGCAAGAACTCAGCAAAAAGTTCC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 AAGAGCTAGAGGCAGTTTCAACTATGAAAAATGGCTTGCAAGAACTCAGCAAAAAGTTCC 2116
Query 779 GAACTTGCAAAGGCCTTCATTCTAAATATTCAGCCAGAGATTGGTTAAGTGGAGCATTTG 838
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2117 GAACTTGCAAGGGCCTTCATTCTCAATATTCAGCCAGAGATTGGTTAAGTGGAGCATTTG 2176
Query 839 TTTATACAGCCATGGTTAATTATCCAACTGCAGCTAATTTCATGGCGCCACTGCCTGGTT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2177 TTTATACAGCCATGGTTAATTATCCAACTGCAGCTAATTTCATGGCGCCACTGCCTGGTT 2236
Query 899 ATCCCGTGGAGCAGATGTGCAAGATCATCGACGGGTTCCCTCGAGGATCCAGTAATCTTG 958
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 ATCCCGTAGAGCAGATGTGCAAGATCATCGACGGGTTCCCTCGAGGATCCAGTAATCTTG 2296
Query 959 ACCGTGCCTTTGCTGCTGCAAGCTTATACTACAACTATTCGGGATCAGAAAAATGCTTCG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2297 ACCGTGCCTTTGCTGCTGCAAGCTTATACTACAACTATTCGGGATCAGAAAAATGCTTCG 2356
Query 1019 AGATGGAACAACAAACTGATGATCATGGACTTGATGGTTGGCAATATCAGGCGTGCACAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2357 AGATGGAACAACAAACTGATGATCATGGACTTGATGGTTGGCAATATCAGGCGTGTACAG 2416
Query 1079 AGATGGTGATGCCAATGAGCTGCTCAAACCAGAGCATGCTGCCTCCGTACGACAATGACT 1138
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 2417 AGATGGTGATGCCAATGAGCTGCTCGAACCAGAGCATGCTCCCTCCGTACGAAAATGACT 2476
Query 1139 ATGAGGCATTCCAAGAACAATGCATGAGTAGATACGGAGTCAAGCCTCGACCCCATTGGA 1198
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2477 CTGAGGCATTCCAAGAACAATGCATGACTAGATACGGAGTCAAGCCTCGACCCCATTGGA 2536
Query 1199 TCACCACAGAATTTGGCGGAAAGAGAATAGAGACAGTATTGAAGAGATTTGGAAGCAACA 1258
|||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||||||
Sbjct 2537 TCACCACAGAATTTGGTGGAATGAGGATAGAGACAGTACTGAAGAGATTTGGAAGCAACA 2596
Query 1259 TCATATTCTCCAATGGAATGCAGGACCCTTGGAGCCGTGGAGGGGTTCTGAAGAACATTT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2597 TCATATTCTCCAATGGAATGCAGGACCCTTGGAGCCGTGGAGGGGTTCTGAAGAACATTT 2656
Query 1319 CAAGCAGCATCGTCGCGCTTGTGACCAAGAAAGGAGCTCACCATGCGGATCTGAGGGCTG 1378
|||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2657 CAAGTAGCATCGTTGCGCTTGTGACCAAGAAAGGAGCTCACCATGCAGATCTCAGGGCTG 2716
Query 1379 CTACAAAAGATGACCCAGAGTGGCTGAAAGAGCAGAGGAGGCAAGAGGTTTCCATTATAG 1438
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2717 CTACAAAAGATGACCCAGAGTGGCTGAAAGAGCAGAGGAGGCAAGAGGTTGCCATTATAG 2776
Query 1439 AGAAATGGATCAGTGAGTATTACAGAGATTTAAGAGAAGA 1478
||||||||||||||||||||||||||||||||||||||||
Sbjct 2777 AGAAATGGATCAGTGAGTATTACAGAGATTTAAGAGAAGA 2816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5