BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344010
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24430.1 | Symbols: ANAC038, NAC038 | NAC domain containing ... 1487 0.0
> AT2G24430.1 | Symbols: ANAC038, NAC038 | NAC domain containing
protein 38 | chr2:10383517-10386625 REVERSE LENGTH=1025
Length=1025
Score = 1487 bits (805), Expect = 0.0
Identities = 911/961 (95%), Gaps = 11/961 (1%)
Strand=Plus/Plus
Query 1 ATGGAACAAGGAGATCATCAACAGCAGAAGAAAGAAGAAGAAGCTTTGCCGCCGGGTTTC 60
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 75 ATGGAACAAGGAGATCATCAGCAGCATAAGAAAGAAGAAGAAGCTTTGCCACCGGGTTTC 134
Query 61 AGATTTCATCCAACTGATGAGGAGCTAATCTCATACTACTTGATTAATAAGATCGCCGAT 120
||||||||||| || |||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 135 AGATTTCATCCGACGGATGAGGAGCTAATCTCATATTACTTGGTTAATAAGATTGCCGAT 194
Query 121 CAAAACTTCACCGGAAAAGCAATCGCCGACGTTGATCTCAACAAGTCCGAGCCATGGGAG 180
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 195 CAAAACTTCACCGGGAAAGCAATCGCTGACGTTGATCTTAACAAGTCCGAGCCATGGGAG 254
Query 181 CTTCCTGAGAAGGCGAAAATGGGCGGAAAAGAATGGTACTTTTTTAGCCTCCGAGACCGG 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 255 CTTCCTGAGAAGGCGAAAATGGGAGGAAAAGAATGGTACTTTTTTAGCCTCCGGGACCGG 314
Query 241 AAGTACCCGACGGGAGTGAGGACGAATAGAGCAACGAATACAGGATATTGGAAAACCACG 300
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 315 AAGTACCCGACGGGAGTGAGGACGAATAGGGCGACGAATACAGGATATTGGAAAACCACA 374
Query 301 GGGAAAGACAAAGAGATATTCAATAGCACAACCTCGGAGTTGGTCGGGATGAAGAAGACT 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GGAAAAGACAAAGAGATATTCAATAGCACAACCTCGGAGTTGGTCGGGATGAAGAAGACT 434
Query 361 TTGGTCTTTTATAGAGGACGAGCTCCTCGTGGGGAGAAGACTAGTTGGGTCATGCATGAG 420
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 435 TTGGTCTTTTACAGAGGACGAGCTCCTCGTGGGGAGAAGACTTGTTGGGTCATGCATGAG 494
Query 421 TATCGACTTCACTCTAAGTCCTCATATAGAACCTCCAAGCAAGACGAGTGGGTAGTGTGT 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TATCGACTTCACTCCAAGTCCTCATATAGAACCTCCAAGCAAGACGAGTGGGTAGTGTGT 554
Query 481 AGAGTGTTCAAGAAAACAGAAGCAACCAAGAAATACATAAGCAGCAGTAGCAGCAGCACA 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 555 AGAGTGTTCAAGAAAACAGAAGCAACCAAGAAATACATAAGCACCAGTAGCAGCAGCACA 614
Query 541 AGTCATCATAACCATAACCACAATCACACAAGAGCCTCAATACTCTCATCAACCAACAAC 600
|||||||| ||| ||| || |||||||||||||||||||| |||||||||||||
Sbjct 615 AGTCATCA---CCACAACAAC---CACACAAGAGCCTCAATACT---ATCAACCAACAAC 665
Query 601 AACAA-CACTAATTACTCATCAGACCTCCTTCAACTCCCACCGCATCTACAACCACACCC 659
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AATAATC-CTAATTACTCATCAGACCTCCTTCAACTCCCACCGCATCTACAACCACACCC 724
Query 660 GAGCCTCAATATCAACCAATCCCTCATGGCTAACGCCGTTCACCTAGCCGAGCTCTCTAG 719
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 725 GAGCCTCAATATTAACCAATCCCTCATGGCAAACGCCGTTCACCTAGCTGAGCTCTCAAG 784
Query 720 AGTCTTCCGTGCCTCCACAAGCACCAACATGGACTCTGCTCATCAGCAGCTAATGAACTA 779
||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 785 AGTCTTCCGTGCCTCTACAAGCACCACCATGGACTCTTCTCATCAGCAGCTAATGAACTA 844
Query 780 CACCCACATGCCTGTCTCAGGGCTCAGTCTAAACCTTGGCGGTGCACTGGTCCAGCCGCC 839
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 845 CACCCACATGCCTGTCTCAGGGCTCAACCTCAACCTTGGCGGTGCACTGGTCCAGCCGCC 904
Query 840 TCCTGTTGTGTCACTCGAGGATGTTGCCGCGGTTAGTGCTTCGTTCAATGGGGGAAACGG 899
|||||||||||| || |||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 905 TCCTGTTGTGTCTCTTGAGGATGTTGCCGCGGTTAGTGCTTCGTACAATGGCGAAAACGG 964
Query 900 GTTTGGAAATGTGGAGATGAGCCAGTGCATGGACTTGGATGGATACTGGCCATCTTATTG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GTTTGGAAATGTGGAGATGAGCCAGTGCATGGACTTGGATGGATACTGGCCATCTTATTG 1024
Query 960 A 960
|
Sbjct 1025 A 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5