BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344050
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24700.1 | Symbols: | Transcriptional factor B3 family prot... 1633 0.0
> AT2G24700.1 | Symbols: | Transcriptional factor B3 family protein
| chr2:10513016-10515411 REVERSE LENGTH=1824
Length=1824
Score = 1633 bits (884), Expect = 0.0
Identities = 1155/1285 (90%), Gaps = 21/1285 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGATCCACCTCTCTATTCTCCGATCAACCCACATTTCTTCCAACCACTTCTTCCC 60
||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 124 ATGGCTAATCCACTTCTCTATTCTCCGATCAACCCACAATTCTTCCAACCACTTCTTCCC 183
Query 61 GGTTTCACCAACCACCTCGACATTCCAGTGGCGTTCTTCTTGAAGCACTTAGTGGGAAGC 120
||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |
Sbjct 184 GGTTTCACCAACCACCTGGACATTCCTGTGGCGTTCTTCTTGAAGTACTTAGTGGGAA-C 242
Query 121 -AACAAAGGAACCACGGCTGAGCTAAGATCAGACGCATCAGAGATGACATGGAGAGTGAA 179
||| ||||| ||||||||||| |||||||| ||||| ||||||||||||| ||||||
Sbjct 243 TAACGTAGGAAAAACGGCTGAGCTCAGATCAGATGCATCGGAGATGACATGGAAAGTGAA 302
Query 180 GATAGACGGCCGGAGACTCTCTAAAGGTTGGGAAGATTTCACCGTCGCACATGATCTTCG 239
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||
Sbjct 303 GATAGACGGCCGGAGACTCTCTAATGGTTGGGAAGATTTCACAATCGCACATGATCTCCG 362
Query 240 AGTTGGTGACATTGTTGTTTTCAGACAAGAAGGAGAGTTAGTGTTCCATGTCTCTGCTTT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 363 AGTTGGTGACATTGTTGTTTTCAGACAAGAAGGAGAGTTAGTGTTCCATGTCACAGCTTT 422
Query 300 AGGACCAAGTTGTTGCGAGATTCAATACAGAGACA-ATTACCCT-GAAGAGGACAAAATA 357
|||||||||||| || |||||||||||| |||| | || ||||| |||||||| |||||
Sbjct 423 AGGACCAAGTTGCTGTGAGATTCAATACGGAGA-AGAT-ACCCTTGAAGAGGATAAAATT 480
Query 358 GAGAAGCTTTGTGATACAGAGAAAGTTTCAAGAAAGAAAAATAGTTTAAAGAGAGAGGCA 417
||||| ||||||| ||| ||||| |||||||| |||||||| ||| |||||||||| ||
Sbjct 481 GAGAAACTTTGTGGTACGGAGAATGTTTCAAGTAAGAAAAAGAGTCTAAAGAGAGAAGCT 540
Query 418 GATTCTGCACCAGAACA-TTCGCTAGGCTCTTGTTTTGTGGCCACTGTCACCGCTTCGAA 476
|| ||||||||||| || ||| |||| ||||||||||||||||||||||| | ||||||
Sbjct 541 GAGTCTGCACCAGA-CAATTCACTAGATTCTTGTTTTGTGGCCACTGTCACGGGTTCGAA 599
Query 477 TCTAAAGCGCGATACAGTGTATATTCCGAAAG-GTTTTGCATTGTCAAATCATCTGATGA 535
|||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 600 TCTAAAGCGCGATACATTGTATATTCCGAAAGAGTTT-GCATTGTCAAATGGTCTGATGA 658
Query 536 ACAAATTTCAGATTGTCTTAATGAATGAAGAAGGAGAATCATGGAAAATAGACTTGAGAC 595
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 ACAAATATCAGATTGTGTTAATGAATGAAGAAGGAGAATCATGGAAGATAGACTTGAGAC 718
Query 596 GTGAGACATATAGTCATGGCCGGTTTTACATGAGAAGAGGCTGGAGAAGTTTCTGTATTG 655
| ||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GCGAGGCATATAATTACGGCCGGTTTTACATGAGAAGAGGCTGGAGAAGTTTCTGTATTG 778
Query 656 CGAATGGGAAGAAACCGGGAGAC-TCGTTCGCATTCAAATTAGTCGAAAATGAAGAAACA 714
| |||||||||||||| |||||| | || ||||||||||| ||| ||||||||||||||
Sbjct 779 CTAATGGGAAGAAACCTGGAGACGTTTTT-GCATTCAAATTGGTCAAAAATGAAGAAACA 837
Query 715 CCTGTGCTCCAGTTGTTCCCTATGACCATTGAAGATCTAGACAAACTTCAGAG-CGTTCC 773
||| || | ||||||||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct 838 CCTATGATACAGTTGTTCCCTATGACCATTGAAGATTTAGACAAACTTCAGAGTC-TTCC 896
Query 774 AAGAGAAAAGAGTCGGAAAGTAGAAGCACCTCCTTC---ACCAGACCCTTCTTCGTTTGT 830
|||| | |||| ||| ||| ||||||| ||||||| ||| |||| |||||| |||||
Sbjct 897 AAGACACAAGATTCGAAAAACAGAAGCAGCTCCTTCTTCACCGGACCTTTCTTCTTTTGT 956
Query 831 AGCCACTGTCACGGCTTCAAATCTGAGCCGCGATAGACTGTATCTTCCGAAGACGTTCAT 890
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 957 AGCCACTGTCACGGCTTCAAATCTAAGCCGAGATAGACTGTATCTTCCGAAGACGTTCAT 1016
Query 891 GATGTCAAATGGTTTGTTGAAGAAATTTCAGATGTGTTTAATGAATGAAGAGGGAGAATC 950
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1017 TATGTCAAATGGTTTGTTGAAGAAATTTCAGATGTGTCTAATGAATGAAGAGGGAGAATC 1076
Query 951 ATGGACAATAGACATGAAACATGAGGCACATTCAGGCCGGTTTTTAATGATAAGAGGCTG 1010
|||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||| ||
Sbjct 1077 ATGGACGATAGATGTGAAACATGAGGCACATACAGGCCGGTTTTTAACGATAAGAGGTTG 1136
Query 1011 GAGAAGTTTCTGTGTGGCTAATGGGAAGAAACCTGGAGACTTGTTCGAATTCAGATTAGT 1070
|||||| |||||||||||||||||||||||||| ||||||||| || |||||| ||||||
Sbjct 1137 GAGAAGATTCTGTGTGGCTAATGGGAAGAAACCAGGAGACTTGCTCAAATTCAAATTAGT 1196
Query 1071 CCAAAATGAAGTAACACCTGTGCTCCAGTTGGTACCCTTGAACAGTGAAGATCTACACAA 1130
||| || |||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1197 CCATAACGAAGAAACACCTGTGCTCCAGTTGTTACCCTTGAACAGTGAAGATCTACACAA 1256
Query 1131 ACTTGAGCCTAACAATGACACAAGGCAAGGAAAGTGTTTAGAAGCTACCAAAAAAGAGTT 1190
|||| | |||| ||||||||||||||| ||| || ||||| ||| |||||||||||||||
Sbjct 1257 ACTTAATCCTAGCAATGACACAAGGCATGGACAGAGTTTAAAAGTTACCAAAAAAGAGTT 1316
Query 1191 TCTTTGTTTACAAGCCACAAAAAA-GAAGTTTCTTGGCGAAGAAGTTTACCGTAATGACT 1249
|||| | | |||||||| |||| || ||||||||| |||||||||||| |||||||||
Sbjct 1317 TCTTGGCATGGAAGCCACAGAAAATGA-GTTTCTTGGGGAAGAAGTTTACTGTAATGACT 1375
Query 1250 CCTTCAAAGCTATCGATGAA-GATA 1273
|||| ||||||| ||| ||| ||||
Sbjct 1376 CCTTTAAAGCTAGCGA-GAAAGATA 1399
Score = 549 bits (297), Expect = 3e-155
Identities = 349/374 (93%), Gaps = 4/374 (1%)
Strand=Plus/Plus
Query 1259 CTATCGATGAAGATATAAGGAAAGGACAATGTTCA-AAAGCTATTAAACAAGAATATGTT 1317
||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 1418 CTATCAATGAAGATATAAGGCAAGGACAATGTTCACAAA-CTATTAAACAAGAATATGTT 1476
Query 1318 TCCGCAGAAGAGAATAACTCAACAAGCCAAAACCAATTTGTGACCTTAACACTTACACCT 1377
||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1477 TCCACAGAAGAGAAAAACTCAACAAGCCAAAACCGATTTGTGACCTTAACACTTACACAT 1536
Query 1378 TCAAGTAAACTTAATCTTCCGGTGGAATTCATGAAGGGGAATGGAATCAACAAGGCGGGG 1437
||||||||||||||||||||| | |||||||||||| ||||||||||||| |||||||||
Sbjct 1537 TCAAGTAAACTTAATCTTCCGTTTGAATTCATGAAGCGGAATGGAATCAAAAAGGCGGGG 1596
Query 1438 AAGATAACAATGCTTGATAGATACGATGCAAAATGGCCG-ACGTCACTACTGATGGACAA 1496
|||||||| ||| ||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 1597 AAGATAACGATGGTTGATAGATACGATGCAAAATGG-CGTACTTCACTACTGATGGACAA 1655
Query 1497 GAGAGGAACAATGAGTTTAGGAAGAGGTTCAAAAGGTTTCTGTGAGGTTAACGGCGTTAA 1556
|| |||||||||||||||||||||||||||||||||||||| |||||||| || ||| |
Sbjct 1656 GATCGGAACAATGAGTTTAGGAAGAGGTTCAAAAGGTTTCTGCGAGGTTAATGGTGTTGA 1715
Query 1557 GATGAATGAGTCGTTTGTCTTGGAGTTGATATGGGAAGACACAGTTCCTCTTCTTAAGTT 1616
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1716 GATGAATGAGTCGTTTATCTTGGAGTTGATTTGGGAAGACACAGTTCCTCTTCTTAAGTT 1775
Query 1617 TTGTTCCAAAGTTT 1630
||||||||||||||
Sbjct 1776 TTGTTCCAAAGTTT 1789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5