BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344051
Length=2526
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24710.1 | Symbols: ATGLR2.3, GLR2.3 | glutamate receptor 2.... 3142 0.0
AT2G24720.1 | Symbols: ATGLR2.2, GLR2.2 | glutamate receptor 2.... 2922 0.0
AT2G24750.1 | Symbols: | pseudogene, similar to Avr9/Cf-9 rapi... 1147 0.0
> AT2G24710.1 | Symbols: ATGLR2.3, GLR2.3 | glutamate receptor
2.3 | chr2:10516880-10520549 REVERSE LENGTH=2688
Length=2688
Score = 3142 bits (1701), Expect = 0.0
Identities = 2275/2547 (89%), Gaps = 60/2547 (2%)
Strand=Plus/Plus
Query 13 GATTTCTACTCTTCTC-GTCCCCAGTTTAG-GACAAGGCTTGTCGTCAACGTTGGTGACT 70
|||||||||||||| | |||||||||| | |||||||||||| |||||||| |||||||
Sbjct 169 GATTTCTACTCTTC-CAATCCCCAGTTT-GAGACAAGGCTTGTTGTCAACGTAGGTGACT 226
Query 71 CCAAAAAG-GACGTTGTAGGTGCCGCAATTGCAGCTCTTGATCTAATAAAAAACAAGCAA 129
|| ||||| ||||||||||||||||| |||||||||||||| || ||||| ||||| |||
Sbjct 227 CC-AAAAGTGACGTTGTAGGTGCCGCGATTGCAGCTCTTGACCTGATAAAGAACAAACAA 285
Query 130 GTGAAAGCAATTTTGGGGCCATGGACATCTATGCAAGCTCATTTCTTAATCGAGATTGGC 189
||||| || |||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 286 GTGAAGGCTATTTTGGGGCCATGGACATCTATGCAAGCTCACTTCCTGATCGAGATTGGC 345
Query 190 CAAAAATCGCAGGTTCCTATTGTTTCCTTTTCTGCAACAAGCCCATTTCTTAATTCCCTT 249
||||| || | ||||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 346 CAAAAGTCCCGGGTTCCTATTGTTTCCTATTCTGCAACAAGCCCAATTCTTACTTCCCTT 405
Query 250 CGTAGTCCATACTTCTTTCGTGCTACGTACGAAGACTCCTCTCAAGTGGAAGCC-ATAAA 308
||||||||||||||||| |||||||||||||||||||||| |||||| || || |||||
Sbjct 406 CGTAGTCCATACTTCTTACGTGCTACGTACGAAGACTCCTTTCAAGTTCAA-CCAATAAA 464
Query 309 AGGCTTCATCAAATTATTTGGGTGGAGAGAAGTTGTGCCAGTTTACATCGACAACACCTT 368
|| | |||||||||| || || |||||||||||||||||||||||||| |||||||||||
Sbjct 465 AGCCATCATCAAATTGTTCGGATGGAGAGAAGTTGTGCCAGTTTACATTGACAACACCTT 524
Query 369 TGGAGAAGGTATCATGCCTCGTCTCACCGATGCATTACAAGATATTAATGTCCGGATACC 428
||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 525 TGGTGAAGGTATAATGCCTCGTCTTACCGATGCTTTACAAGATATTAATGTCCGGATACC 584
Query 429 TTATAGATCCGTTATCGCTCTCAATGCCACGGATCAAGAAATCTCCGTGGAGCTTCTTAA 488
||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct 585 TTATAGATCCGTTATCGCTATCAATGCCACTGATCATGAAATCTCCGTGGAGCTTCTTAA 644
Query 489 GATGATGAACAGGCCCACAAGAGTGTTCATTGTCCACATGTACGCTTCTCTAGCCTCAAG 548
||||||||||| |||||||||||||||| |||||||||||||| | ||| ||||||||
Sbjct 645 GATGATGAACATGCCCACAAGAGTGTTCCTTGTCCACATGTACTATGATCTTGCCTCAAG 704
Query 549 AGTCTTCATTAAAGCAAAGGAGATTGGTTTGATGAAAGCAGGATATGTCTGGATCCTTAC 608
| |||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 705 ATTCTTCATTAAAGCAAAAGAGCTTGGTTTGATGGAACCAGGATATGTCTGGATCCTTAC 764
Query 609 GAATGGAGTTATAGATGACTTAAGTTCGATAAATGAGACGGGTATTGAGGCTATGGATGG 668
||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||| ||
Sbjct 765 CAATGGAGTTATCGATGACTTAAGTTTGATAAATGAGACGGCTGTTGAGGCTATGGAGGG 824
Query 669 GGTATTGGGTATAAAAACTTATATTCAAAAATCCCAAGATCTTGAAAAGTTTATATCTCG 728
|||||||||||| ||||||||||||| |||||||| ||||||||| ||||||| ||||||
Sbjct 825 GGTATTGGGTATTAAAACTTATATTCCAAAATCCCCAGATCTTGAGAAGTTTAGATCTCG 884
Query 729 ATGGAGGAAG-ATATTCCCACGGTTGGAGCTGAATGTCTATGGAT-TGTGGGCTTATGAT 786
||||| |||| ||||||||||| ||||||||| ||||||||| | ||||||||||||||
Sbjct 885 ATGGA-GAAGTTTATTCCCACGGGTGGAGCTGAGTGTCTATGG-TCTGTGGGCTTATGAT 942
Query 787 GGTACCACTGCGTTAGCCATGGCCATTGAAGAAGCAGGAATAAATAACATGACTTTCAGT 846
| |||||| || |||| | |||||||||||||| |||| |||||||||||||||||||
Sbjct 943 GCTACCACCGCACTAGCGGTAGCCATTGAAGAAGCTGGAACAAATAACATGACTTTCAGT 1002
Query 847 AATGTGGTGGATACGGGGAGGAATGTGTCTGAACTTGAAGCTCTTGGTTTATCTCAATAC 906
|| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 1003 AAAGTGGTGGATACAGGGAGGAATGTTTCTGAACTTGAAGCTCTTGGTTTATCTCAGTTC 1062
Query 907 GGTCCAAAGCTTCTCGAAACGCTCTCAAAAGTTCAGTTCAGAGGACTTGGAGGAGACTTC 966
||||||||||||||| |||| |||| || |||||||||||||||||||| |||||| ||
Sbjct 1063 GGTCCAAAGCTTCTCCAAACACTCTTAACAGTTCAGTTCAGAGGACTTGCAGGAGAGTTT 1122
Query 967 CATTTTGTCAACGGGCAACTGCAACCATCGGTGTTTGAGATTGTCAATATGATTGGA-AC 1025
| |||| || ||||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 1123 CGTTTTTTCCGCGGGCAACTGCAACCATCGGTGTTTGAGATTGTCAATAT-AATCAATAC 1181
Query 1026 CGGAGAAAAGA-CAATAGGATTCTGGACGGAGGGAAATGGTCTTGTGAAGCAACTAGATC 1084
||||||||| | |||||||||| |||| |||||||||||||||||||||| |||| ||||
Sbjct 1182 CGGAGAAAA-ATCAATAGGATTTTGGAAGGAGGGAAATGGTCTTGTGAAGAAACTTGATC 1240
Query 1085 AACAACCAAGTAGCATGAGCGCTTTATCTACTTGGCAAGATCATCTTAAACAGATAATAT 1144
| ||| |||||||||| |||||||||||||||||| |||||||||||||||| || |||
Sbjct 1241 AGCAAGCAAGTAGCATAAGCGCTTTATCTACTTGGAAAGATCATCTTAAACACATTGTAT 1300
Query 1145 GGCCTGGAGAGGCTGATTCTATTCCGAAAGGATGGGAGATCCCGACTAATGGGAAGAAGT 1204
||||||||||||| |||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct 1301 GGCCTGGAGAGGCGGATTCTGTTCCGAAAGGATGGCAGATCCCGACTAAGGGGAAGAAGT 1360
Query 1205 TGCGCATTGGAGTTCCTaaaaaaaTCGGTTTCACTGATCTCGTGAAGGTCACAAGGGATC 1264
|||| ||||||||||| |||| || ||| | ||||||||| ||||| |||||||||||||
Sbjct 1361 TGCGTATTGGAGTTCCCAAAAGAACCGGCTACACTGATCTTGTGAAAGTCACAAGGGATC 1420
Query 1265 CTATCACCAATTCAACTATAGTCACAGGTTTCTGCATAGATTT-TTTCGAGGCTGTGATT 1323
|||| |||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 1421 CTATTACCAATTCAACTGTAGTCACAGGTTTTTGCATAGATTTCTTT-GAGGCTGTGATT 1479
Query 1324 CAAGCAA-TGCCGTATGACGTCTCTTATGAGTTCATTCCTTTTGAAAAACCTGACGGTAA 1382
| || || |||| ||||||||||| ||||||||||| ||||| |||||||| ||||| ||
Sbjct 1480 CGAG-AACTGCCTTATGACGTCTCATATGAGTTCATACCTTTCGAAAAACCCGACGGAAA 1538
Query 1383 AGCAGGCGGTAGTTACAACGAATTGGTCTACCAAGTTTACCTCGGGAGATATGATGCAGT 1442
| ||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1539 AACAGCCGGTAATTACAACGACTTGGTCTACCAAGTGTACCTCGGGAGATATGATGCGGT 1598
Query 1443 TGTGGGAGATACAACCGTACTGGCAAACAGGTCCTCTTATGTAGACTTCACATTCCCATT 1502
|||||||||||||||| || ||| |||||||| ||||| || |||||||||||||||||
Sbjct 1599 TGTGGGAGATACAACCATATTGGTGAACAGGTCTTCTTACGTCGACTTCACATTCCCATT 1658
Query 1503 TATTAAATCAGGTGTGGGATTGATCGTCT-CAATGACAGACGCAGTAAAGAGAGACAGTG 1561
||||||||||||||| ||||||||||| | |||||||||| |||||||||||||| |
Sbjct 1659 TATTAAATCAGGTGTCGGATTGATCGT-TGAAATGACAGACCCAGTAAAGAGAGAC--TA 1715
Query 1562 T-TA-GTTT-AGTGAAACCCTTATCATGGAAACTGTGGTTGACTTCCTTTTTCTCTTTCT 1618
| || ||| | ||||||| || ||||||||||| ||||||||||||||| |||||||||
Sbjct 1716 TATACTTTTCA-TGAAACCTTTGTCATGGAAACTATGGTTGACTTCCTTTATCTCTTTCT 1774
Query 1619 TCCTTGTCGGTTGTACTGTGTGGGTTCTTGAACATACAG-TTAATCCGGACTTTCGTGGA 1677
||||||||||||||||||| |||||||| ||| ||| || ||||||||||||| |||||
Sbjct 1775 TCCTTGTCGGTTGTACTGTATGGGTTCTCGAATATA-AGCGTAATCCGGACTTTAGTGGA 1833
Query 1678 CCGAAAAGATTCCAAGCTAGTACCATCTGTTGGTTTGCCTTCTCTACCATGGTTTTTGCT 1737
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 CCGCCTAGATTCCAAGCTAGTACCATCTGTTGGTTTGCCTTCTCTACCATGGTTTTTGCT 1893
Query 1738 CCAAGAGAAAGAGTATTTAGCTTTTGGGCGAGGGCCCTGGTTATTACATGGTACTTTCTT 1797
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1894 CCAAGAGAAAGAGTATTTAGCTTTTGGGCGAGGGCCCTGGTTATCGCATGGTACTTTCTC 1953
Query 1798 GTTCTCGTGTTAACTCAGAGTTACACAGCTAGTTTGGCATCGCTTTTGACATCACA-ACA 1856
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 1954 GTTCTCGTGTTAACCCAGAGTTACACAGCGAGTTTGGCATCGCTTTTGACATCACAGA-A 2012
Query 1857 ACTAAATCCAACCATAACCAGCATGAGAAGCTTGCTTGATAAAGGAGAATCAGTGGGTTA 1916
| |||||||||| |||||||||||||| || |||||||| ||||||||| ||||||||||
Sbjct 2013 ATTAAATCCAACAATAACCAGCATGAGTAGTTTGCTTGAAAAAGGAGAAACAGTGGGTTA 2072
Query 1917 TCAGAGAACATCCTTCATCCTTGGAAAGCTTAAAGAA-GAAGGTTTCCCGAAATCTAGGC 1975
|||| |||||||||||||||||||||||||||||||| || ||||||||| ||||||| |
Sbjct 2073 TCAGCGAACATCCTTCATCCTTGGAAAGCTTAAAGAAAGA-GGTTTCCCGCAATCTAGCC 2131
Query 1976 TTGTTCCCTTTGATACCGCAGAAGAATGCGACGAGCTTCTAAGTAAAGGAACaaaaaaaG 2035
|||| ||||||||||| ||||||||||| || |||||||||||||||||| |||||||||
Sbjct 2132 TTGTGCCCTTTGATACTGCAGAAGAATGTGATGAGCTTCTAAGTAAAGGACCAAAAAAAG 2191
Query 2036 GTGGTGTCGCAGGAGCTTTCTTGGAAATACCTTACTTGAGACTCTTTCTTGGCCAATTTT 2095
|||||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2192 GTGGTGTCTCTGGAGCTTTCTTGGAAATACCTTACTTGAGACTCTTTCTTGGACAGTTTT 2251
Query 2096 GCAACACATATAAAATGGTTGAAGAACCATTCAATGTTGATGGATTTGGCTTTGTTTTTC 2155
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 2252 GCAACACATACAAAATGGTTGAAGAACCCTTCAATGTTGATGGATTCGGCTTTGTTTTTC 2311
Query 2156 CAATCGGATCACCTTTGGTAGCCGATTTTTCAAGGGCTATCTTAAAAGTAGCAGAGTCTC 2215
|||||||||||||| | || |||||| |||||||||| ||||||||||||||||||||||
Sbjct 2312 CAATCGGATCACCTCTAGTGGCCGATGTTTCAAGGGCCATCTTAAAAGTAGCAGAGTCTC 2371
Query 2216 CAAAGGCAATGGAGCTCGAGCGTGCATGGTTCAAGAAGAAAGAACAAAGGTGTCCTGATC 2275
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2372 CAAAGGCAATGGAGCTCGAGCGTGCATGGTTCAAGAAGAAAGAACAAAGCTGTCCTGATC 2431
Query 2276 CAATTACTAATCCAGATCCAAATCCCTCTTTCACCTCTAGGCAGCTTGGCGTAGACAGTT 2335
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 2432 CAATTACTAATCCAGATCCAAATCCCTCTTTCACCTCTAGGCAGCTTGACATAGACAGTT 2491
Query 2336 TCTTGGT-CATGTTTATTG-CTGTGTTAGTTGTGTGTGTTATAGCACTC--ACATATCA- 2390
||||| | | ||||| ||| | |||||| ||||||||||||| |||||| | || |||
Sbjct 2492 TCTTGTTTC-TGTTTGTTGGC-GTGTTACTTGTGTGTGTTATGGCACTCGGAAATTTCAC 2549
Query 2391 -T-TT----CCTACCAAAATTCTACAACGATTCGTACCTCGATAGGGTAGAGAAAAATCC 2444
| || |||| | ||| | || | |||||||||||||| |||||||| | |||
Sbjct 2550 ATATTGTTTCCTAGCGAAAGAC--CAG-GTTTCGTACCTCGATAAGGTAGAGATGAGTCC 2606
Query 2445 GTGTTCATCAAGTCAACAAACGC--GT-AAGGACAGCAATAAAGCAAC-AAACCAGG-CA 2499
|||||||||||||||||||| || || ||| | | || | | ||| ||| | | |
Sbjct 2607 GTGTTCATCAAGTCAACAAATGCCTGTCAAG-AG-G-AAGACA-CAATTAAAT-ATGTCT 2661
Query 2500 CAAGTTCATGACCAAGACTGTCTTTAA 2526
|||||||||||||||||| ||||||||
Sbjct 2662 CAAGTTCATGACCAAGACAGTCTTTAA 2688
> AT2G24720.1 | Symbols: ATGLR2.2, GLR2.2 | glutamate receptor
2.2 | chr2:10522783-10525840 REVERSE LENGTH=2763
Length=2763
Score = 2922 bits (1582), Expect = 0.0
Identities = 2135/2401 (89%), Gaps = 41/2401 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCTTGCCGATTTCTACTCTTCTCGTCCCCAGTTT-AGGACAAGGCTTGTCGTCAA 59
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 160 ATGTCTCTTGCCGATTTCTACTCTTCTCGTCCCCAGTTTCA-GACAAGGCTTGTCGTCAA 218
Query 60 CGTTGGTGACTCCAAAAAGGACGTTGTAGGTGCCGCAATTGCAGCTCTTGATCTAATAAA 119
|||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||||
Sbjct 219 CGTTGGTGACTCCAAAAATGACGTTGTAGGTGCCGCAACTGCAGCTATTGATCTGATAAA 278
Query 120 AAACAAGCAAGTGAAAGCAATTTTGGGGCCATGGACATCTATGCAAGCTCATTTCTTAAT 179
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 279 GAACAAGCAAGTGAAAGCTATTTTGGGGCCATGGACATCTATGCAAGCTCATTTCTTGAT 338
Query 180 CGAGATTGGCCAAAAATCGCAGGTTCCTATTGTTTCCTTTTCTGCAACAAGCCCATTTCT 239
|||||||||||||||||| | ||||||| ||||||||| ||||||||||||||||| |||
Sbjct 339 CGAGATTGGCCAAAAATCTCGGGTTCCTGTTGTTTCCTATTCTGCAACAAGCCCATCTCT 398
Query 240 TAATTCCCTTCGTAGTCCATACTTCTTTCGTGCTACGTACGAAGACTCCTCTCAAGTGGA 299
|| ||| || || |||||||||||||| || ||||| || || ||||||||||||||| |
Sbjct 399 TACTTCTCTCCGCAGTCCATACTTCTTCCGAGCTACATATGAGGACTCCTCTCAAGTGCA 458
Query 300 AGCCATAAAAGGCT-TCATCAAATTATTTGGGTGGAGAGAAGTTGTGCCAGTTTACATCG 358
|| |||||| ||| | ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 459 TGCTATAAAA-GCTATTATCAAGTTGTTTGGGTGGAGAGAAGTTGTGCCAGTTTACATCG 517
Query 359 ACAACACCTTTGGAGAAGGTATCATGCCTCGTCTCACCGATGCATTACAAGATATTAATG 418
||||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct 518 ACAACACTTTTGGAGAAGGTATAATGCCTCGTCTCACTGATTCATTACAAGATATTAATG 577
Query 419 TCCGGATACCTTATAGATCCGTTATCGCTCTCAATGCCACGGATCAAGAAATCTCCGTGG 478
| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct 578 TTCGGATACCTTATAGATCCGTTATCCCTCTCAATGCCACGGATCAAGATATCTCTGTGG 637
Query 479 AGCTTCTTAAGATGATGAACAGGCCCACAAGAGTGTTCATTGTCCACATGTACGCTTCTC 538
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 638 AGCTTCTTAAGATGATGAACATGCCCACAAGAGTGTTCATTGTCCACATGTCCTCTTCTC 697
Query 539 TAGCCTCAAGAGTCTTCATTAAAGCAAAGGAGATTGGTTTGATGAAAGCAGGATATGTCT 598
||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 698 TAGCCTCAACAGTCTTCATTAAAGCAAAGGAGCTTGGTTTGATGAAACCAGGATATGTCT 757
Query 599 GGATCCTTACGAATGGAGTTATAGATGACTTAAGTTCGATAAATGAGACGGGTATTGAGG 658
|||||||||| ||||||||||| |||| |||| | |||||||||||||||||||||||||
Sbjct 758 GGATCCTTACAAATGGAGTTATGGATGGCTTACGGTCGATAAATGAGACGGGTATTGAGG 817
Query 659 CTATGGATGGGGTATTGGGTATAAAAACTTATATTCAAAAATCCCAAGATCTTGAAAAGT 718
||||||| |||||||||||||| ||||||||||||| ||||||| ||||||| |||| ||
Sbjct 818 CTATGGAGGGGGTATTGGGTATTAAAACTTATATTCCAAAATCCAAAGATCTAGAAACGT 877
Query 719 TTATATCTCGATGGAGGAAGATATTCCCACGGTTGGAGCTGAATGTCTATGGATTGTGGG 778
||| ||| || |||| || || |||||||| | |||||||||||||||||||||||||||
Sbjct 878 TTAGATCACGTTGGAAGAGGAGATTCCCACAGATGGAGCTGAATGTCTATGGATTGTGGG 937
Query 779 CTTATGATG-GTACCACTGCGTTAGCCATGGCCATTGAAGAAGCAGGAATAAATAACATG 837
||||||||| | |||||||| | ||||||||||||||||| || |||||||||||||||
Sbjct 938 CTTATGATGCG-ACCACTGCACTGGCCATGGCCATTGAAGATGCGGGAATAAATAACATG 996
Query 838 ACTTTCAGTAATGTGGTGGATACGGGGAGGAATGTGTCTGAACTTGAAGCTCTTGGTTTA 897
||||||||||| | ||||||||||||| |||||| ||||||||||| | ||||||||||
Sbjct 997 ACTTTCAGTAA--T-GTGGATACGGGGAAGAATGTTTCTGAACTTGATGGTCTTGGTTTA 1053
Query 898 TCTCAATACGGTCCAAAGCTTCTCGAAACGCTCTCAAAAGTTCAGTTCAGAGGACTTGGA 957
|| |||| ||||||||||||||| | ||| |||||| ||||||||||| ||| |||| |
Sbjct 1054 TCACAATTTGGTCCAAAGCTTCTCCAGACGGTCTCAACAGTTCAGTTCAAAGGTCTTGCA 1113
Query 958 GGAGACTTCCATTTTGTCAACGGGCAACTGCAACCATCGGTGTTTGAGATTGTCAATATG 1017
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GGAGACTTCCATTTTGTCAGCGGGCAACTGCAACCATCGGTGTTTGAGATTGTCAATATG 1173
Query 1018 ATTGGAACCGGAGAAAAGACAATAGGATTCTGGACGGAGGGAAATGGTCTTGTGAAGCAA 1077
|||||||||||||||| | |||||||||| |||||||| |||||||||||||||||| ||
Sbjct 1174 ATTGGAACCGGAGAAAGGTCAATAGGATTTTGGACGGAAGGAAATGGTCTTGTGAAGAAA 1233
Query 1078 CTAGATCAACAACCAAGTAGCATGAGCG--CTTTATCTACTTGGCAAGATCATCTTAAAC 1135
|| || ||| |||| | ||||| || | ||||||| ||||||| ||||||||||||||
Sbjct 1234 CTTGACCAAGAACCTCGAAGCAT-AG-GTACTTTATCCACTTGGCCAGATCATCTTAAAC 1291
Query 1136 AGATAATATGGCCTGGAGAGGCTGATTCTATTCCGAAAGGATGGGAGATCCCGACTAATG 1195
| |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 1292 ATATAATATGGCCTGGAGAGGCCGTTTCTGTTCCGAAAGGATGGGAGATCCCGACTAATG 1351
Query 1196 GGAAGAAGTTGCGCATTGGAGTTCCTaaaaaaaTCGGTTTCACTGATCTCGTGAAGGTCA 1255
||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct 1352 GGAAGAAGTTGCGCATTGGAGTTCCCAAGAGAATCGGTTTCACTGATCTCGTGAAGGTCA 1411
Query 1256 CAAGGGATCCTATCACCAATTCAACTATAGTCACAGGTTTCTGCATAGATTTTTTCGAGG 1315
||||||||||||||||||||||||| |||||| |||||| |||||||||||||| ||||
Sbjct 1412 CAAGGGATCCTATCACCAATTCAACGGTAGTCAAAGGTTTTTGCATAGATTTTTTTGAGG 1471
Query 1316 CTGTGATTCAAGCAATGCCGTATGACGTCTCTTATGAGTTCATTCCTTTTGAAAAACCTG 1375
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1472 CTGTGATTCAAGCAATGCCTTATGACGTCTCTTATGAGTTCTTTCCTTTTGAAAAACCCA 1531
Query 1376 ACGGTAAAGCAGGCGGTAGTTACAACGAATTGGTCTACCAAGTTTACCTCGGG-AGATAT 1434
||||| || ||| ||||| | ||||||| |||||| ||||||| ||||||||| | || |
Sbjct 1532 ACGGTGAACCAGCCGGTAATCACAACGACTTGGTCCACCAAGTGTACCTCGGGCA-ATTT 1590
Query 1435 GATGCAGTTGTGGGAGATACAACCGTACTGGCAAACAGGTCCTCTTATGTAGACTTCACA 1494
||||| || || |||||||||||| ||||||| ||||||||||||| ||| ||||| |||
Sbjct 1591 GATGCCGTGGTCGGAGATACAACCATACTGGCGAACAGGTCCTCTTTTGTTGACTTTACA 1650
Query 1495 TTCCCATTTATTAAATCAGGTGTGGGATTGATCGTCTCAATGACAGACGCAGT-AAAGAG 1553
||||||| || |||||||||||||||||||||||| || ||| ||| | ||| ||| ||
Sbjct 1651 CTCCCATTCATGAAATCAGGTGTGGGATTGATCGTCCCATTGAAAGATGAAGTGAAA-AG 1709
Query 1554 AGACAGTGTT-AGTTTAGTGAAACCCTTATCA-TGGAAACTGTGGTTGACTTCCTTTTTC 1611
||||| || || || ||||||| || ||| | ||| || |||||||| |||| ||
Sbjct 1710 AGACAAA-TTCAGCTTCTTGAAACCTTTGTCAATCGAA-CTATGGTTGACAACCTTAGTC 1767
Query 1612 TCTTTCTTCCTTGTCGGT-TGTACTGTGTGGGTTCTTGAACATACAGTTAATCCGGACTT 1670
| ||||||||| || || | || ||| ||| ||||||||||| || ||| |||||||
Sbjct 1768 TTTTTCTTCCTAGTTGGAAT-TAGTGTATGGACTCTTGAACATAGGGTCAATTCGGACTT 1826
Query 1671 TCGTGGACC-GAAAAGATT-CCAAGCTAGTACCATCTGT-TGGTTTGCCTTCTCTACCAT 1727
|||||||| | || || ||||||||||||||||| | ||||||||||||||||||||
Sbjct 1827 CCGTGGACCAGCTAA--TTACCAAGCTAGTACCATCT-TCTGGTTTGCCTTCTCTACCAT 1883
Query 1728 GGTTTTTGCTCCAAGAGAAAGAGTATTTAGCTTTTGGGCGAGGGCCCTGGTTATTACATG 1787
|||||||||||||||||||||||| ||||||| |||| ||| |||| ||| | |||||
Sbjct 1884 GGTTTTTGCTCCAAGAGAAAGAGTGCTTAGCTTCGGGGCAAGGTCCCTTGTTGTCACATG 1943
Query 1788 GTACTTTCTTG-TTCTCGTGTTAACTCAGAGTTACACAGCTAGTTTGGCATCGCTTTTGA 1846
|||||| | | |||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1944 GTACTT-CGTCCTTCTCGTGTTAACTCAGAGTTACACAGCCAGTTTGGCGTCGCTTTTGA 2002
Query 1847 CATCACAACAACTAAATCCAACCATAACCAGCATGAGAAGCTTGCTTGATAAAGGAGAAT 1906
||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||
Sbjct 2003 CATCACAACAACTAAATCCAACCATAACCAGCATGAGTAGCTTGCTTCATAGAGGAGAAA 2062
Query 1907 CAGTGGGTTATCAGAGAACATCCTTCATCCTTGGAAAGCTTAAAGAAGA-AGGTTTCCCG 1965
||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 2063 CAGTGGGTTATCAGAGAACATCCTTCATCCTTGGAAAGCTTAACGAA-ACAGGTTTCCC- 2120
Query 1966 A-AATCTAGGCTTGTTCCCTTTGATACCGCAGAAGAATGCGACGAGCTTCT-AAGTAAAG 2023
| ||||||| ||||| |||||||||||||||||||||||||| |||||||| || ||||
Sbjct 2121 ACAATCTAGCCTTGTGCCCTTTGATACCGCAGAAGAATGCGATGAGCTTCTGAAA-AAAG 2179
Query 2024 GAACaaaaaaaGGTGGTGTCGCAGGAGCTTTCTTGGAAATACCTTACTTGAGACTCTTTC 2083
|| ||||||| |||||||| || | ||||||||||| || ||||||| ||||||||||||
Sbjct 2180 GACCAAAAAATGGTGGTGTGGCTGCAGCTTTCTTGGGAACACCTTACGTGAGACTCTTTC 2239
Query 2084 TTGGCCAATTTTGCAACACATATAAAATGGTTGAAGAACCATTCAATGTTGATGGATTTG 2143
|||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 2240 TTGGACAATATTGCAACACTTATAAAATGGTTGAAGAACCCTTCAATGTTGATGGATTCG 2299
Query 2144 GCTTTGTTTTTCCAATCGGATCACCTTTGGTAGCCGATTTTTCAAGGGCTATCTTAAAAG 2203
||||||| |||||||||||||||||| |||| |||||| |||||||||| ||||||||||
Sbjct 2300 GCTTTGTGTTTCCAATCGGATCACCTCTGGTGGCCGATGTTTCAAGGGCCATCTTAAAAG 2359
Query 2204 TAGCAGAGTCTCCAAAGGCAATGGAGCTCGAGCGTGCATGGTTCAAGAAGAAAGAACAAA 2263
|||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct 2360 TAGCAGAGTCTCCAAAGGCAGTGGAGCTCGAGCACGCTTGGTTCAAGAAGAAAGAACAAA 2419
Query 2264 GGTGTCCTGATCCAATTACTAATCCAGATCCAAATCCCTCT-TTCACCTCTAGGCAGCTT 2322
| |||||||||||| |||| ||||||||| ||||||| || || ||| ||| |||||
Sbjct 2420 GTTGTCCTGATCCAGTTACCAATCCAGATTCAAATCCAACTGTT-ACCGCTATACAGCTC 2478
Query 2323 GGCGTAGACAGTTTCTTGGTCAT-GTTTATTGCTGTGTTAGTTGTGTGTGTTATAGCACT 2381
||||||| |||||||| ||| | |||| ||| |||||| ||||| || ||| |||||||
Sbjct 2479 GGCGTAGGCAGTTTCT-GGTTTTTGTTTCTTGTTGTGTTTGTTGTCTGCGTTCTAGCACT 2537
Query 2382 C 2382
|
Sbjct 2538 C 2538
> AT2G24750.1 | Symbols: | pseudogene, similar to Avr9/Cf-9 rapidly
elicited protein 141, similar to GB:AAB61068; blastp match
of 43% identity and 5.0e-152 P-value to GP|30013669|gb|AAP03877.1||AY220478
Avr9/Cf-9 rapidly elicited protein 141
{Nicotiana tabacum} | chr2:10539001-10545985 FORWARD LENGTH=6985
Length=6985
Score = 1147 bits (621), Expect = 0.0
Identities = 1113/1348 (83%), Gaps = 43/1348 (3%)
Strand=Plus/Plus
Query 101 CAGCTCTTGATCTAATAAAAAACAAGCAAGTGAAAGCAATTTTGGGGCCATGGACATCTA 160
|||||||| | || ||||| |||||||| ||| ||| ||||||||||| |||||||| |
Sbjct 4003 CAGCTCTTAAGCTGATAAAGAACAAGCACGTGGTAGCGATTTTGGGGCCTTGGACATCCA 4062
Query 161 TGCAAGCTCATTTCT-TAATCGAGATTGGCCAAAAATCGCAGGTTCCTATTGTTTCCTT- 218
||||||||||||| | | || || ||||| |||||||| | ||| || ||||||| |||
Sbjct 4063 TGCAAGCTCATTT-TATGATTGATATTGGACAAAAATCTCGGGTGCCGATTGTTT-CTTA 4120
Query 219 TTCTGCAACAAGCCCATTTCTTAATTCCCTTCGTAGTCCATACTTCTTT-CGTGCTACGT 277
||||||||||| || ||||||| ||| || || ||||||||||| ||| |||||||| |
Sbjct 4121 CTCTGCAACAAGTCCGTTTCTTACTTCTCTACGCAGTCCATACTT-TTTCCGTGCTACAT 4179
Query 278 ACGAAGACTCCTCTCAAGTGGAA-GCCATAAAAGGCT-TCATCAAATTATTTGGGTGGAG 335
| || ||||||| |||||| || ||||||||| || ||||||| || |||||||||||
Sbjct 4180 ATGAGGACTCCTTTCAAGT-AAAGGCCATAAAA-TCTATCATCAAGTTGTTTGGGTGGAG 4237
Query 336 AGAAGTTGTGCCAGTTTACATCGACAACACCTTTGGAGAAGGTATCATGCCTCGTCTCAC 395
|||||| |||| ||||||||||||||| | |||||||||||||| ||||| | ||| ||
Sbjct 4238 AGAAGTCGTGCTTGTTTACATCGACAACTCATTTGGAGAAGGTATTATGCCACATCTTAC 4297
Query 396 CGATGCATTACAAGATATTAATGTCCGGATACCTTATAGATCCGTTATCGCTCTCAATGC 455
|||||||||||||| ||||| || || ||| | || |||| |||||| ||||||||||
Sbjct 4298 TGATGCATTACAAGAGATTAACGTTCGAATATCATACAGATATGTTATCTCTCTCAATGC 4357
Query 456 CACGGATCAAGAAATCTC-CGTGGAGC-TTCTTAAGATGATGAACAGGCCCACAAGAGTG 513
||| ||| | |||||||| | | |||| ||| ||||||||||| || ||||||||||||
Sbjct 4358 CACTGATTATGAAATCTCTC-TAGAGCTTTC-TAAGATGATGACCATGCCCACAAGAGTT 4415
Query 514 TTCATTGTCCACATGTACGCTTCTCTAGCCTCAAGAGTCTTCATTAAAGCAAAGGAGATT 573
|| || ||||||||| | ||||||| |||||||||||||| | |||| ||| |||||
Sbjct 4416 TTTATCGTCCACATGCCCTCTTCTCTTGCCTCAAGAGTCTTTACTAAAATTAAGAAGATT 4475
Query 574 GGTTTGATGAAAGCAGGATATGTCTGGATCCTTACGAATGGAGTTATAGATGACTTAAGT 633
|||||||||||| |||||||||| ||||||||||| | |||||| | ||||| ||||||
Sbjct 4476 GGTTTGATGAAACCAGGATATGTTTGGATCCTTACCAGTGGAGTAACCGATGAGTTAAGT 4535
Query 634 TCGATAAATGAGACGGGTATTGAGGCTATGGATGGGGTATTGGGTATAAAAACTTATATT 693
| | || ||||| ||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 4536 TTGGTAGATGAGGCGGGTATTGAGGCTATGGAAGGGGTATTGGGTGTTAAAACTTATATT 4595
Query 694 CAAAAATCCCAA-GATCTTGAAAAGTTTATATCTCGATGGAGGAAGATA-TTCCCACGGT 751
| |||| | || || || |||||||||| | || | |||||||||| | |||||| ||
Sbjct 4596 CGGAAAT-CAAATGACCTCGAAAAGTTTAGAGCTTGTTGGAGGAAGA-AGTTCCCAGGGA 4653
Query 752 TGGAGCTGAATGTCTATGGATTGTGGGCTTATGATGGTACCA-CTGCGTTAGCCATGGCC 810
|||| ||||||||||||||||||||||||||||||| ||||| | || || || || ||
Sbjct 4654 TGGACCTGAATGTCTATGGATTGTGGGCTTATGATGCTACCATC-GCATTGGCAATAGCT 4712
Query 811 ATTGAAGAAGCAGGAATAAATAACATGACTTTCAGTAATGTGGTGGATACGGGGAGGAAT 870
||||||||||| |||| | ||||||||||||| |||||||||| | | | | || |||
Sbjct 4713 ATTGAAGAAGCTGGAACAGATAACATGACTTTTAGTAATGTGGAGT-T-CAGAAAG-AAT 4769
Query 871 GTGTCTGAACTTGAAGCTCTTGGTTTATCTCAATACGGTCCAA-AGCTTCTCGAA-ACGC 928
|||||||||||||||||||||||||| |||||||||||||||| | |||| | || || |
Sbjct 4770 GTGTCTGAACTTGAAGCTCTTGGTTTTTCTCAATACGGTCCAAGA-CTTCGC-AAGACAC 4827
Query 929 TCTCAAAAGTTCAGTTCAGAGGACTTGGAGGAGACTTCCATTTTGTC-AACGGGCAACTG 987
|| ||| ||||| ||| | |||||||| |||||| |||| ||||||| || || |||||
Sbjct 4828 TCACAACAGTTCGGTTGAAAGGACTTGCAGGAGATTTCCGTTTTGTCGAA-GGACAACTA 4886
Query 988 CAACCATCGGTGTTTGAGATTGTCAATATGATTGGAACCGGAGAAAAGACAATAGGATTC 1047
||||||| |||||||||||| || ||| ||||||||||| |||||| | ||||||||||
Sbjct 4887 CAACCATGGGTGTTTGAGATAGTTAATGTGATTGGAACCAGAGAAAGGTCAATAGGATTT 4946
Query 1048 TGGACGGAGGGAAATGGTCTTGTGAAGCAACTAGATCAACAACC--AAGTAGCATGAGCG 1105
|||||||| | |||||||||||||||| || |||| ||| | || || | || | | |
Sbjct 4947 TGGACGGAAGAAAATGGTCTTGTGAAGAAATTAGACCAAGAGCCGCAAA-A-CACGGGTG 5004
Query 1106 CTTTATCTACTTGGCAAGATCATCTTAAACAGATAATATGGCCTGGAGAGGCTGATTCTA 1165
| ||||| |||||||||||||||||||| |||||||||||||| ||||||||| | | |
Sbjct 5005 CGTTATCCACTTGGCAAGATCATCTTAAGCAGATAATATGGCCCGGAGAGGCTAACTATG 5064
Query 1166 TTCCGAAAGGATGGGAGATCCCGACTAATGGGAAGAAGTTGCGCATTGGAGTTCCTaaaa 1225
|||| ||||||||||||||||| || || ||||||| |||||||||||||||||| ||||
Sbjct 5065 TTCCCAAAGGATGGGAGATCCCAACGAACGGGAAGAGGTTGCGCATTGGAGTTCC-AAAA 5123
Query 1226 a-aa-TCGGTTTCACTGATCTCGTGAAGGTCACAAGGGATCCTATCACCAATTCAACTAT 1283
| || | |||| ||| ||||| ||| ||||||| | |||||||| ||| |||||| | |
Sbjct 5124 AGAACT-GGTTACACCGATCTTGTGGAGGTCACCATGGATCCTACCACGAATTCA-CAAG 5181
Query 1284 A-GTCACAGGTTTCTGCATAGATTT-TTTCGAGGCTGTGATTCAAGCAATGCCGTATGAC 1341
| |||| |||||| ||||||| ||| ||| || |||||||| ||| |||||| ||||||
Sbjct 5182 AAGTCAAAGGTTTTTGCATAGCTTTCTTT-GAAGCTGTGATCCAAAAAATGCCTTATGAC 5240
Query 1342 GTCTCTTATGAGTTCATTCCTTTTGAAAAACCTGACGGTAAAGCAGGCGGTAGTTACAAC 1401
|||| ||||| ||| |||||||||||| | | ||||||||| ||| ||| | | |||||
Sbjct 5241 ATCTCCTATGATTTCTTTCCTTTTGAAACATCGGACGGTAAACCAGCCGGAAATCACAAC 5300
Query 1402 GAAT-TGGTCTACCAAGTTTACCTCGGG 1428
|| | | |||||||||||||||| |||
Sbjct 5301 GA-TCTAATCTACCAAGTTTACCTTGGG 5327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125367190557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5