BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344061
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17770.1 | Symbols: SUVH7, SDG17 | SU(VAR)3-9 homolog 7 | ch... 1136 0.0
AT2G24740.1 | Symbols: SDG21, SUVH8 | SET domain group 21 | chr... 1129 0.0
> AT1G17770.1 | Symbols: SUVH7, SDG17 | SU(VAR)3-9 homolog 7 |
chr1:6120741-6122822 FORWARD LENGTH=2082
Length=2082
Score = 1136 bits (615), Expect = 0.0
Identities = 886/1014 (87%), Gaps = 30/1014 (3%)
Strand=Plus/Plus
Query 631 GTGATAGGAAAATCTGGCTTTAAGGAGTTCAGATTCAAATTGGTGAGGAAACCAGACCAA 690
|||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1072 GTGACAGGAAAATCCGGCTTCAAGGAGTTCAGATTCAAATTGGTGAGGAAACCAAACCAA 1131
Query 691 CCAT-CTGGTTATGCAATCTGGAAATCAGTTGAAATTTTGAGGAACCATGACTTGATTGA 749
|| | ||| |||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 1132 CC-TCCTGCTTATGCAATCTGGAAAACAGTTGAAAATCTGAGGAACCATGACTTGATTGA 1190
Query 750 TCCAA-GAAATGGTTCTATACTTGGAGATCTTTCTTTTGGAGCAGAGGTTTTACGAGTTC 808
| ||| | || |||| |||||||| |||||||||||||||||| ||| ||||||||||||
Sbjct 1191 TTCAAGGCAA-GGTTTTATACTTGAAGATCTTTCTTTTGGAGCTGAGCTTTTACGAGTTC 1249
Query 809 CGCTCGTTAATGAAGTTGATGAAGATGACAAAACGATTCCTGAAGATTTTGACTACATTA 868
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1250 CGCTCGTTAATGAAGTTGATGAAGATGACAAAACGATTCCCGAAGATTTTGATTACATCC 1309
Query 869 GATCTCAGTGTTACTCAGGTATGATGTT---TGA-TCTTAATGTTGATATTCAATCACTT 924
||||||||| |||| ||||||||| ||| | || || ||||| ||||||||||
Sbjct 1310 CCTCTCAGTGTCACTCTGGTATGATGACGCATGAAT-TTCATTTTGATCGTCAATCACTT 1368
Query 925 GGATGCCAGAATTGT-GAG-TCA----TGCA-GTCATCAAAACTGCTCGTGCATGG-GTA 976
||||||||||||||| || ||| |||| | |||||||||||| | ||| || | |
Sbjct 1369 GGATGCCAGAATTGTCGACATCAGCCATGCATG-CATCAAAACTGCACCTGCGTGCAG-A 1426
Query 977 AAAACGGTGGCGAGCTACCATACCATAACAACATTTTGGTTTCTCGTAAACCATTGATTT 1036
|||||||| | |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1427 GAAACGGTGACCTGCTACCGTACCATAACAACATTTTGGTTTGTCGTAAACCATTGATTT 1486
Query 1037 ACGAGTGTGGTGGATCTTGTCCCTGCCCC-ATCGATTGCCCAAACCGATTGGTTCAAACC 1095
||||||| |||||||||||||| |||||| | | ||||||||| ||| ||||||||||||
Sbjct 1487 ACGAGTGCGGTGGATCTTGTCCTTGCCCCGACC-ATTGCCCAACCCGGTTGGTTCAAACC 1545
Query 1096 GGTTTGAAGCTCCACTTGGAAGTGTTCAAAACA-GCAAACTGTGGTTGGGGTTTACGTTC 1154
|||||||| ||||| |||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 1546 GGTTTGAAACTCCATTTGGAAGTGTTCAAGACAAG-AAACTGTGGTTGGGGTTTACGTTC 1604
Query 1155 TTGGGATCCAATCCGAGCGGGAACTTTTATCTGCGAGTTTGCCGGTGTGAGCAAGACAAA 1214
|||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 1605 TTGGGATCCAATCCGAGCCGGAACTTTTATCTGCGAGTTTGCTGGTTTGAGAAAGACAAA 1664
Query 1215 AGAAGAAGTAGAAGAGGATGACGATTACTTGTTCGACACATCTCGGATTTATCATACCTT 1274
||||||||||||||||||||| ||||||||||||||||| || ||||||||| | ||
Sbjct 1665 AGAAGAAGTAGAAGAGGATGATGATTACTTGTTCGACACGTCAAAGATTTATCAGAGGTT 1724
Query 1275 CATATGGAACTATGAACCTCAGCTTTTGCGTGAAGAT-GCTTCAAAACAGGTCTCTGAAG 1333
|| ||||||||| |||||| ||||||||| ||||||| | || |||| |||||||||
Sbjct 1725 CAGATGGAACTACGAACCTGAGCTTTTGCTTGAAGATAG-TTGGGAACAAGTCTCTGAAT 1783
Query 1334 TTATCAATCTTCCGACACAAGTCTTGATAAGTGCCAAGGAGAAAGGAAATGTAGGTCGGT 1393
||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| |||||||
Sbjct 1784 TTATCAATCTTCCAACACAAGTCTTGATAAGTGCTAAGGAAAAAGGGAATGTTGGTCGGT 1843
Query 1394 TCATGAACCACAGCTGTTGGCCCAATGTTTTTTGGCAGCCTATTGAATATGAAAACA-AC 1452
||||||| ||||| |||| || |||||||| |||||||||||||| |||||||||| |
Sbjct 1844 TCATGAATCACAGTTGTTCACCGAATGTTTTCTGGCAGCCTATTGAGTATGAAAACAGA- 1902
Query 1453 GGTGTTACATATGTTCGCATTGGACTTTTTGCAATGAAGCATATTCCTCCAATGACAGAG 1512
|||| | |||| ||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1903 GGTGATGTATATCTTCTTATCGGACTTTTTGCTATGAAGCATATTCCTCCGATGACAGAG 1962
Query 1513 TTAACATATGACTATGGAGTTTCTTGTGTGGAGAAGAATGGAGAAGATGA-G-A-TACTT 1569
||||||||||||||||||||||| |||||||||| || | ||||||||| | | | |||
Sbjct 1963 TTAACATATGACTATGGAGTTTCATGTGTGGAGAGGAGCGAAGAAGATGAAGTACTTCTT 2022
Query 1570 TATAAAGGCAAGAAGATTTGTCTATGTGGTTCAGTCAAATGTCGTGGCTCTTTT 1623
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2023 TATAAAGGCAAGAAGACCTGTCTCTGTGGTTCAGTCAAATGTCGTGGCTCTTTT 2076
> AT2G24740.1 | Symbols: SDG21, SUVH8 | SET domain group 21 | chr2:10529690-10531957
REVERSE LENGTH=2268
Length=2268
Score = 1129 bits (611), Expect = 0.0
Identities = 889/1015 (88%), Gaps = 51/1015 (5%)
Strand=Plus/Plus
Query 627 GCATGTGATAGGAAAATCTGGCTTT-AAGGAGT-TCAGATTCAAATTGGTGAGGAAACCA 684
||| |||| ||||||||| || ||| ||||||| | || |||||| || |||||||||||
Sbjct 1293 GCAAGTGACAGGAAAATCCGG-TTTCAAGGAGTAT-AGGTTCAAACTGCTGAGGAAACCA 1350
Query 685 GACCAACCAT-CTGGTTATGCAATCTGGAAATCAGTTGAAATTTTGAGGAACCATGACTT 743
| |||||| | ||||||||||||||||||||| |||||||| ||||||||| ||||| ||
Sbjct 1351 GGCCAACC-TCCTGGTTATGCAATCTGGAAATTAGTTGAAAATTTGAGGAATCATGAATT 1409
Query 744 GATTGATCCAAGA-AATGGTTCTATACTTGGAGATCTTTCTTTTGGAGCAGAGGTTTTAC 802
||||||||||||| || |||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1410 GATTGATCCAAGACAA-GGTTTTATACTTGGAGATCTTTCTTTTGGAGAAGAGGGTTTAC 1468
Query 803 GAGTTCCGCTCGTTAATGAAGTTGATGAAGATGACAAAACGATTCCTGAAGATTTTGACT 862
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 1469 GAGTTCCGCTCGTTAATGAAGTCGATGAAGAAGACAAAACGATTCCTGACGATTTTGACT 1528
Query 863 ACATTAGATCTCAGTGTTACTCAGGTATGATGTTTGATCTTAATGTTGATATTCAATCAC 922
|||||||||||||||||||||||||||||| | |||| |||||||||||| ||||||||
Sbjct 1529 ACATTAGATCTCAGTGTTACTCAGGTATGACGAATGATGTTAATGTTGATAGTCAATCAC 1588
Query 923 TTGGATGCCAGAATTGTGAGTCATGCAGTCATCAAAACTGCTCGTGCATGGGT-AAAAAC 981
| | | | | |||||| || ||||||||||||| | ||||| | ||||||
Sbjct 1589 -T---T----G---T-TCAGTCATACATTCATCAAAACTGCACATGCAT-TCTAAAAAAC 1635
Query 982 GGTGG-CGAGCTACCATACCATAACAACATTTTGGTTTCTCGTAAACCATTGATTTACGA 1040
|||| | || ||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1636 TGTGGTC-AGTTACCATACCATGACAACATTTTGGTTTGTCGTAAACCATTGATTTACGA 1694
Query 1041 GTGTGGTGGATCTTGTCCCTGCCCCATCGATTGCCCAAACCGATTGGTTCAAACCGGTTT 1100
||||||||||||||| | ||| | | |||| ||||| ||||||||||
Sbjct 1695 GTGTGGTGGATCTTG----T---CCA---A-----C---CCGAATGGTTGAAACCGGTTT 1736
Query 1101 GAAGCTCCACTTGGAAGTGTTCAAAACAGCAAACTGTGGTTGGGGTTTACGTTCTTGGGA 1160
||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 1737 GAAGCTCCACTTGGAAGTGTTTAAGACATCAAACTGTGGTTGGGGTTTACGTTCTTGGGA 1796
Query 1161 TCCAATCCGAGCGGGAACTTTTATCTGCGAGTTTGCCGGTGTGAGCAAGACAAAAGAAGA 1220
|||||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 1797 TCCAATCCGAGCTGGAACTTTTATCTGCGAGTTTACTGGTGTGAGCAAGACGAAAGAAGA 1856
Query 1221 AGTAGAAGAGGATGACGATTACTTGTTCGACACATCTCGGATTTATCATACCTTCATATG 1280
||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||| |||
Sbjct 1857 AGTAGAAGAAGATGACGACTACTTGTTCGATACATCTCGGATTTATCATAGCTTCAGATG 1916
Query 1281 GAACTATGAACCTCAGCTTTTGCGTGAAGATGCTT-CAAAACAGGTCTCTGAAGTTA-TC 1338
|||||||||||| |||||||| |||||||||||| | || || |||||||||| | |
Sbjct 1917 GAACTATGAACCGGAGCTTTTGTGTGAAGATGCTTGCGAA-CAAGTCTCTGAAGATGCT- 1974
Query 1339 AATCTTCCGACACAAGTCTTGATAAGTGCCAAGGAGAAAGGAAATGTAGGTCGGTTCATG 1398
|||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1975 AATCTTCCAACGCAAGTCTTGATAAGCGCCAAGGAGAAAGGAAATGTTGGTCGGTTCATG 2034
Query 1399 AACCACAGCTGTTGGCCCAATGTTTTTTGGCAGCCTATTGAATATGA--A-AACAACGGT 1455
||||||| ||||||||| |||||||| ||||||||||| || ||||| | |||||||||
Sbjct 2035 AACCACAACTGTTGGCCTAATGTTTTCTGGCAGCCTATAGAGTATGATGATAACAACGGT 2094
Query 1456 GTTACATATGTTCGCATTGGACTTTTTGCAATGAAGCATATTCCTCCAATGACAGAGTTA 1515
| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 2095 CACATATATGTTCGCATTGGACTTTTTGCGATGAAGCACATTCCTCCAATGACAGAGTTA 2154
Query 1516 ACATATGACTATGGAGTTTCTTGTGTGGAGAAGAATGGAGAAGATGA-GATACTTTATAA 1574
||||||||||||||| |||||||||||||||||| ||||||||| || | || |||||||
Sbjct 2155 ACATATGACTATGGAATTTCTTGTGTGGAGAAGACTGGAGAAGACGAAG-TAATTTATAA 2213
Query 1575 AGGCAAGAAGATTTGTCTATGTGGTTCAGTCAAATGTCGTGGCTCTTTTGGCTGA 1629
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2214 AGGAAAGAAGATTTGTCTCTGTGGTTCAGTCAAATGTCGTGGCTCTTTTGGCTGA 2268
Score = 579 bits (313), Expect = 4e-164
Identities = 479/557 (86%), Gaps = 20/557 (4%)
Strand=Plus/Plus
Query 44 ACAACAACTCTTA-TGATGGGGGTGCTGGTCCTAGTACTGGTCCAAGAAAACGAGGACGT 102
|||||||||| || ||||| | |||||||||||||| |||||| | |||||||| || ||
Sbjct 590 ACAACAACTC-TACTGATGCGAGTGCTGGTCCTAGTTCTGGTCTAGGAAAACGAAGATGT 648
Query 103 GGCCGACCAAAGGG-TTCAAAAACCGGAACGAGAAAGCCAAAGAAGCCAAAAGCATATGA 161
|||||||||||||| || |||||| || |||||||||||||||||||||||||| ||||
Sbjct 649 GGCCGACCAAAGGGTTTAAAAAACAGG-TCGAGAAAGCCAAAGAAGCCAAAAGCAGATGA 707
Query 162 TCCTAATAGCAAACTGATTAAATCTTGTCCAAAATTTGATTCAGGGATAACCAAAGCAGA 221
||||||||||||| || ||| |||||||| | ||||||||| |||||||| |||||||
Sbjct 708 TCCTAATAGCAAAATGGTTATCTCTTGTCCGGATTTTGATTCAAGGATAACCGAAGCAGA 767
Query 222 GAGAGAAAGCGGAAACCTTGAGATTGTTGCTTCGGTGTTGATGCGGTTTGACGCGATTAG 281
||||||||||||||||| ||||| |||| |||| | |||||||||||||||||| ||||
Sbjct 768 GAGAGAAAGCGGAAACCAGGAGATAGTTGATTCGATTTTGATGCGGTTTGACGCGGTTAG 827
Query 282 ACGGCGATTACACCAAGTAAACCAGCC-AAAAGAC---ATCCTTACAACAGCGTCAACTA 337
|||||| ||| |||| ||||| | || |||||| |||||| |||||||||||||
Sbjct 828 ACGGCGGTTATGCCAACTAAACTA-CCGGAAAGACAAGATCCTT---ACAGCGTCAACTA 883
Query 338 ATTGCATGAGA-TTGGGAGTCCGGACAAATATGACGAGAAGAATTGGTCCAATTCCTGGA 396
||||||||| | ||||| ||||||||||| |||||||| |||||||| || ||||| |||
Sbjct 884 ATTGCATGA-ATTTGGGGGTCCGGACAAACATGACGAGGAGAATTGGACCCATTCCCGGA 942
Query 397 GTACAAGTAGGCGATATATTCTACTACTGGGGTGAAATGTGCTTAGTCGGTCTTCACAGA 456
||||||||||| ||||||||||| |||||| |||||||||| |||||||| |||||||||
Sbjct 943 GTACAAGTAGGTGATATATTCTATTACTGGTGTGAAATGTGTTTAGTCGGGCTTCACAGA 1002
Query 457 GACATGGCCGCG-GGCATTGATTA-TCTGTCAGCTAAAAG-GAGTGGAGTGGATGGTCAT 513
||| ||| | | |||||||| || ||| | ||| |||| ||||||||||||||||| |
Sbjct 1003 AACACGGCTG-GAGGCATTGA-TAGTCTATTGGCT-AAAGAGAGTGGAGTGGATGGTCCT 1059
Query 514 GCTGCTACGAGTGTGGTAACATCAGGACAGTACGATGATGAAACCGAGGAGCTTGACACT 573
||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| ||
Sbjct 1060 GCTGCTACGAGTGTGGTAACATCAGGAAAGTACGACAATGAAACCGAGGATCTTGAAACG 1119
Query 574 TTGATCTATATCGGACA 590
|||||||||| ||||||
Sbjct 1120 TTGATCTATAGCGGACA 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80471473635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5