BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg344066 Length=576 Score E Sequences producing significant alignments: (Bits) Value AT5G28823.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 418 3e-116 > AT5G28823.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Zinc knuckle (CCHC-type) family protein (TAIR:AT2G07760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:10837849-10839826 REVERSE LENGTH=1707 Length=1707 Score = 418 bits (226), Expect = 3e-116 Identities = 304/341 (89%), Gaps = 7/341 (2%) Strand=Plus/Plus Query 5 CATTAGATACGGCTGTTGTTTCTAATGGTGCAGCGATATTGAACGGGTTTCACCAAACAG 64 |||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| | Sbjct 1088 CATTAGATACGGCTATTGTTTCTAATGGTGCAGCGATATTGAAAGGGTTTCACAAAACTG 1147 Query 65 TTGTTGACTCATCGGTTAAACCCCATCAAGTTGTTGTAAATCCTAACACCGAGTTTCTCT 124 ||| |||| |||||||| ||||| |||| ||| || | ||| |||||| ||||||| Sbjct 1148 TTGATGACACATCGGTTTTACCCCTTCAA---GTTATAGGTACTATCACCGACTTTCTCT 1204 Query 125 CCTCTTCAAACTCAAAAGAAGAAGCTGTCTTTGGCTTGAGATCATTAGCAATTACTGATG 184 ||||||||||||| ||||||||| ||||| |||||||| ||||| ||||||||||||||| Sbjct 1205 CCTCTTCAAACTCGAAAGAAGAAACTGTCATTGGCTTGGGATCAGTAGCAATTACTGATG 1264 Query 185 CAAGTAAGGTTGTGGTTGTCGTTCATCAGCTAGTTGAGAAGGACGTCTTGCAAATTTCAG 244 ||||||| | ||||||||||| || |||||||||||||||||| |||||||||||||||| Sbjct 1265 CAAGTAAAGATGTGGTTGTCGGTCCTCAGCTAGTTGAGAAGGAGGTCTTGCAAATTTCAG 1324 Query 245 ATTCAACTACTGCCATGCTTTCTTCAACCATGAAAGTGATGGCTACTCCCGCAAAAGTCT 304 |||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 1325 ATTCAAATACTGCCATACTTTCTTCAACCATGAAAGTGATGGCTACTCCCGCAAAGGTCT 1384 Query 305 CCT-CAAATATA-ACTACCTCTGCTTCAGGGGTCAAATCTA 343 | | |||||| | ||||||||| || ||||||||||||||| Sbjct 1385 C-TACAAATA-ACACTACCTCTACTGCAGGGGTCAAATCTA 1423 Score = 268 bits (145), Expect = 3e-71 Identities = 194/216 (90%), Gaps = 9/216 (4%) Strand=Plus/Plus Query 344 CATCGGATGTGGTGCTGCCCGAAGATTCAGACATGGTTGATTCTGACAAGTCTGAGGACT 403 ||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| | Sbjct 1484 CATCGGATGTGGTTCTGCGCGAAGATTCAAACATGGTTGATTCTGACAAGTCTGAGGATT 1543 Query 404 CAGATGAGGATCTCATAATGAATCAAAAGTCACCATTTTCAGAAAAACATCTCCACGACA 463 |||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |||| Sbjct 1544 CAGATGAGGATCTCATAATGAATCTAAAGTCAACATTTTCAGGAAAACATCTCCAAGACA 1603 Query 464 GACCGTTGCAATTGTC-GAACAAGGCAATAATTATTGGTCGTGGAGGAAGAGGAAGACG- 521 ||||||||||||| || |||||||||||||| |||||||| |||||||||||||||| | Sbjct 1604 GACCGTTGCAATT-TCCGAACAAGGCAATAAATATTGGTCATGGAGGAAGAGGAAGAGGA 1662 Query 522 ---CG-GTCTCGAGGAAATCATGGTCGACGAGTGTG 553 || | ||||||||||| ||||||||||| ||| Sbjct 1663 AGACGAGG-TCGAGGAAATCGTGGTCGACGAG-GTG 1696 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27679014997 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5