BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344066
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28823.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 418 3e-116
> AT5G28823.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: cultured cell; BEST
Arabidopsis thaliana protein match is: Zinc knuckle (CCHC-type)
family protein (TAIR:AT2G07760.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:10837849-10839826
REVERSE LENGTH=1707
Length=1707
Score = 418 bits (226), Expect = 3e-116
Identities = 304/341 (89%), Gaps = 7/341 (2%)
Strand=Plus/Plus
Query 5 CATTAGATACGGCTGTTGTTTCTAATGGTGCAGCGATATTGAACGGGTTTCACCAAACAG 64
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 1088 CATTAGATACGGCTATTGTTTCTAATGGTGCAGCGATATTGAAAGGGTTTCACAAAACTG 1147
Query 65 TTGTTGACTCATCGGTTAAACCCCATCAAGTTGTTGTAAATCCTAACACCGAGTTTCTCT 124
||| |||| |||||||| ||||| |||| ||| || | ||| |||||| |||||||
Sbjct 1148 TTGATGACACATCGGTTTTACCCCTTCAA---GTTATAGGTACTATCACCGACTTTCTCT 1204
Query 125 CCTCTTCAAACTCAAAAGAAGAAGCTGTCTTTGGCTTGAGATCATTAGCAATTACTGATG 184
||||||||||||| ||||||||| ||||| |||||||| ||||| |||||||||||||||
Sbjct 1205 CCTCTTCAAACTCGAAAGAAGAAACTGTCATTGGCTTGGGATCAGTAGCAATTACTGATG 1264
Query 185 CAAGTAAGGTTGTGGTTGTCGTTCATCAGCTAGTTGAGAAGGACGTCTTGCAAATTTCAG 244
||||||| | ||||||||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 1265 CAAGTAAAGATGTGGTTGTCGGTCCTCAGCTAGTTGAGAAGGAGGTCTTGCAAATTTCAG 1324
Query 245 ATTCAACTACTGCCATGCTTTCTTCAACCATGAAAGTGATGGCTACTCCCGCAAAAGTCT 304
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1325 ATTCAAATACTGCCATACTTTCTTCAACCATGAAAGTGATGGCTACTCCCGCAAAGGTCT 1384
Query 305 CCT-CAAATATA-ACTACCTCTGCTTCAGGGGTCAAATCTA 343
| | |||||| | ||||||||| || |||||||||||||||
Sbjct 1385 C-TACAAATA-ACACTACCTCTACTGCAGGGGTCAAATCTA 1423
Score = 268 bits (145), Expect = 3e-71
Identities = 194/216 (90%), Gaps = 9/216 (4%)
Strand=Plus/Plus
Query 344 CATCGGATGTGGTGCTGCCCGAAGATTCAGACATGGTTGATTCTGACAAGTCTGAGGACT 403
||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| |
Sbjct 1484 CATCGGATGTGGTTCTGCGCGAAGATTCAAACATGGTTGATTCTGACAAGTCTGAGGATT 1543
Query 404 CAGATGAGGATCTCATAATGAATCAAAAGTCACCATTTTCAGAAAAACATCTCCACGACA 463
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||
Sbjct 1544 CAGATGAGGATCTCATAATGAATCTAAAGTCAACATTTTCAGGAAAACATCTCCAAGACA 1603
Query 464 GACCGTTGCAATTGTC-GAACAAGGCAATAATTATTGGTCGTGGAGGAAGAGGAAGACG- 521
||||||||||||| || |||||||||||||| |||||||| |||||||||||||||| |
Sbjct 1604 GACCGTTGCAATT-TCCGAACAAGGCAATAAATATTGGTCATGGAGGAAGAGGAAGAGGA 1662
Query 522 ---CG-GTCTCGAGGAAATCATGGTCGACGAGTGTG 553
|| | ||||||||||| ||||||||||| |||
Sbjct 1663 AGACGAGG-TCGAGGAAATCGTGGTCGACGAG-GTG 1696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27679014997
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5