BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344097
Length=2361
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25020.1 | Symbols: | pseudogene, similar to Hypothetical p... 2259 0.0
AT3G32280.1 | Symbols: | ATP-dependent helicase family protein... 1140 0.0
AT3G32330.1 | Symbols: | DNA repair protein-related | chr3:132... 1013 0.0
AT3G31900.1 | Symbols: | ATP-dependent helicase family protein... 1005 0.0
AT3G32370.1 | Symbols: | pseudogene, similar to Hypothetical p... 891 0.0
AT3G32310.1 | Symbols: | pseudogene, similar to Hypothetical p... 750 0.0
AT3G32320.1 | Symbols: | transposable element gene | chr3:1327... 158 3e-37
> AT2G25020.1 | Symbols: | pseudogene, similar to Hypothetical
protein, contains similarity to Swiss-Prot:Q61687 transcriptional
regulator ATRX (X-linked nuclear protein, Heterochromatin
protein 2, HP1 alpha-interacting protein, HP1-BP38 protein)
(Mus musculus); blastp match of 38% identity and 2.2e-95
P-value to GP|20219037|gb|AAM15781.1|AC104428_2|AC104428 Hypothetical
protein {Oryza sativa (japonica cultivar-group)}
| chr2:10639089-10642250 FORWARD LENGTH=3162
Length=3162
Score = 2259 bits (1223), Expect = 0.0
Identities = 1490/1616 (92%), Gaps = 29/1616 (2%)
Strand=Plus/Plus
Query 530 AGGATCATCCATTGCCACCCGGATTCGGGTCGAATATCTGCAAAGATATCAAGTTGAGAG 589
|||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 1568 AGGATCATCCGTTGCCACCCGGATTCGGATCAAATATCTGCAAAGATATCAAGATGAGAG 1627
Query 590 TTCCTAAAGATGGGTTTTTAGGAACTGGCATTTTCCCTCATCCTTTGCTTGAAAGT-ATT 648
|||| |||||||| |||| |||||||||||||||||| |||||||||| | ||| | |||
Sbjct 1628 TTCCAAAAGATGGATTTTCAGGAACTGGCATTTTCCCACATCCTTTGCAT-AAAATGATT 1686
Query 649 ATGAAACCACATCACTACGAAATACTCAATTTTCTCTGCAAGAACTTGGTTGTGGAAAAC 708
|||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1687 ATGAAACCACATCACTTCGAGATATTCAATTTTCTCTGCAAGAACTTGGTTGTGGAAAAC 1746
Query 709 TCAAACGGCTGCATCATAGCACAAATTCCTTTATCTGAAAAGACCTTCTTGATGATCAAT 768
||||| || ||||||||||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 1747 TCAAATGGATGCATCATAGCTCAAACTCCTTTATCTGAAAAGACCTTCTTGATGATCAGT 1806
Query 769 TTCATATATGGTTACTTAGAAAAGCACCCAAATAGTAAACCTCTATTTGTGCTTCCTAAG 828
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1807 TTCATCTATGGTTACTTAGAAAAGCACCCAAATAGTAAACCTCTATTTGTGCTTCCTAAA 1866
Query 829 TGGATGCTGAATTTTTGGAAAA-AAGATTTTGGTGAATTGAAGGTCAATGACCTCGTGTT 887
||| || |||| |||||||||| || | |||||||||||||||||||||||||| |||||
Sbjct 1867 TGGGTGTTGAACTTTTGGAAAACAA-AGTTTGGTGAATTGAAGGTCAATGACCTTGTGTT 1925
Query 888 GCTAGACTTCTACTCGGCGAAGGCACA-TACCCGATATCAGCAGTTAGAAGTTCTAAAGC 946
|||||||||||||||||| ||||| | |||||||| |||||||||||| |||||||| |
Sbjct 1926 GCTAGACTTCTACTCGGCAAAGGC-GAGTACCCGATCTCAGCAGTTAGAGGTTCTAAACC 1984
Query 947 AATGGATCACAAA-CCGGAGTATTATCTTCTTAGGCACCAAGCAGTTCTCCAACATAGTA 1005
|||||||| ||| |||||||||||||||||||||| |||| || |||||||||||| ||
Sbjct 1985 GATGGATCA-AAACCCGGAGTATTATCTTCTTAGGCGCCAAACAATTCTCCAACATAATA 2043
Query 1006 TCTGATAACAGTGGTACAGAAGCTTCAGATTCTTGTAGGGAAATTCTCTTAAACATTCCT 1065
||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2044 TCTGATAACAGTGGTGCAGAAGCTTCAGATTCTTGTAGGGATATACTCTTAAACATTCCT 2103
Query 1066 TCACTGGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGATGATGAGCTTTCTTAAG 1125
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2104 TCGGTGGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGATGATGAGCTTTCTTAAG 2163
Query 1126 GCTGTTGCTCGTATCAAGACGCCACGA-AAGGTTTTACTCACTGGCACACTATACCAAAA 1184
| ||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||
Sbjct 2164 GTTGTTGCTCGTATCAAGACGCCAC-ATAAGGTTCTACTCACTGGCTCACTATACCAAAA 2222
Query 1185 CAACATTAAGGAGGTTTTCAACATTCTTGATGTTGCTTTCCCTGAGTTTCTGAAGCATAA 1244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2223 CAACATTAAGGAGGTTTTCAACATTCTTGATGTTGTTTTCCCTGAGTTTCTGAAGCATAA 2282
Query 1245 CCAAATTGGTAAAAATATCAGCAAATTC-TTGAATGTTGAAGCTGACGTTGATGGACCTT 1303
|| |||||||||||||||||| |||||| || |||||||||||||| | | | |||||
Sbjct 2283 CCGAATTGGTAAAAATATCAGAAAATTCCTT-AATGTTGAAGCTGA--T-G--G-ACCTT 2335
Query 1304 CAACGAATTTGAAGATGCCCCTATTTGATAAATTGGAAGAAGCTTTGCTTAGTCAAGATT 1363
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 2336 CAACGAATTTGAAGATGCCCTTGTTTGATAAATTGGAAGAAGCTTTGCTTAGTCAAGATT 2395
Query 1364 CTGATCATGGGGACAAGATTGGTTACTTAACCGAACTAAGGATGTTGACAAACAAGGTTA 1423
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2396 CTGATCATGGAGACAAGATTAGTTACTTAACCGAACTAAGGATGTTGACAAACAAGTTTA 2455
Query 1424 TCTACAATTACAAAGGAGAGTGTCTCCTTGATCTCCCGGGATTGCTGGACTTCACGGTGG 1483
| |||||| |||||| ||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 2456 TTTACAATCACAAAGAAGAGTTTCTCCTTGAGGTCCCGGGATTGATGGACTTCACGGTGG 2515
Query 1484 TCTTAAACCCGACATTAAGCCAAAAGTCAGAATGGGAGACTGAAAGAAACTCCAAAGGGA 1543
||||||| |||||||||||||||||||||| |||||||| |||| |||| ||||||||||
Sbjct 2516 TCTTAAAACCGACATTAAGCCAAAAGTCAGCATGGGAGATTGAATGAAAGTCCAAAGGGA 2575
Query 1544 AAGGTTTCAAAACGTACTCTACCTTGAGCGGAATCACT-CTTCACCCACTGCTACGTGCT 1602
|||||||||||||||| ||||||||||||||||||| | |||||||||| |||| |||||
Sbjct 2576 AAGGTTTCAAAACGTATTCTACCTTGAGCGGAATCA-TGCTTCACCCACAGCTATGTGCT 2634
Query 1603 TTCTCAAACCGGGCAAAAGGTCTTCCTGCCCCTAACGAGGATGAGATGGATGAGATTATC 1662
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2635 TTCTCAGACCGGGCAAAAGGTCTTCCTGCCCCCAACGAGGATGAGATGGATGAGATCATC 2694
Query 1663 AAAGAAATCGACGTAACAGATGGCGTTAAAACAAACTTCTTCATGGGTTTAGTGAAGTTA 1722
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 2695 AAAGAAATTGACGTAACAGATGGCGTAAAAACAAAGTTCTTCATGGGTTTAGTAAAGTTA 2754
Query 1723 TGCGATTACACGAATGAGAAGATTCTTGTAGTGAGCCAATATGTCATCCCATTGATATTC 1782
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2755 TGCGGTTACACGAATGAGAAGATTCTTGTAGTGAGCCAATGTGTCATCCCATTGATATTC 2814
Query 1783 CTCCAAAGACTCGTGGCTAAGATTAAAGGTTGGAAAGATGGCAAAGAAACATTCATGATT 1842
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2815 CTCCAAAGACTAGTGGCTAAGATTAAAGGTTGGAAAGATGGCAAAGAAACCTTCATGATC 2874
Query 1843 AAAGGTGATACAAGTCTTTCTGCTCGAGAAATGTCGATTAATCAATTCAACAACTCGA-A 1901
|||||||||||||||| |||||||| | | | ||||||||||| |||||||| | |
Sbjct 2875 AAAGGTGATACAAGTCATTCTGCTC-A----T--CAATTAATCAATTTAACAACTC-ACA 2926
Query 1902 TGATGCGAAAATCTTCTTTGTATCCATTAAAGCGTGTAATGAGCAGATCGGTCTTACGGG 1961
|||||| ||||||||||||| |||||| |||||||||||||||||||| | |||| ||||
Sbjct 2927 TGATGCAAAAATCTTCTTTGCATCCATCAAAGCGTGTAATGAGCAGATAGCTCTTCCGGG 2986
Query 1962 TGCAACAAGGGTTTTAATGCTCGACATCATCGCCAACCCTTGTATGGCTCGACAAGCCAT 2021
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2987 TGCAACAAGGGTTTTAATGCTTGACATCATCGCAAACCCTTGTATGGCTCGACAAGCCAT 3046
Query 2022 AGAGCTGGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTATAGGCTGGTGGCTGC 2081
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3047 AGAGTTGGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTATAGGCTTGTGGCTGC 3106
Query 2082 TGATACATCAGAAGAAGATGAAGAAATAATCGCAGCTAAAAAGGAGATAATTTCTG 2137
|||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 3107 GGATACATCAGAAGAAGGCGAAGACATAATAACAGCTAAAAAGGAGATAATTTCTG 3162
Score = 344 bits (186), Expect = 2e-93
Identities = 241/268 (90%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 41 ATCAAAACGATGATAAAAGAAAAAAGGTTATGACACTAGAAACTCAAGAAGCCAGTGGAA 100
|||||||||| |||||||| |||||||| || ||||||||| ||||||||| | ||||
Sbjct 290 ATCAAAACGACGATAAAAGGAAAAAGGTCGTGGCACTAGAAAATCAAGAAGCTGGGGGAA 349
Query 101 GTTGTGTCGATCAAAATGTGGCTCATTGGTTTTCGAAAACGGAGTTCAATGGGTTAATGG 160
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 350 GTTGTATCGATGGAAATGTGGCTCATTGGTTTTCGAAAACTAAGTTCAATGGGTTGGTGA 409
Query 161 ACGTACCAATTGTGTATTTGGCCTCGGAAGAAAATATAGTTAAGAATGATCATACAATCG 220
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || |
Sbjct 410 ACGTACCAATTGTGTATTTGGCCTTGGAAGAAAATATAGTTAAGAATGATCTTAC-ATTG 468
Query 221 -GAAGCTCACTTAAAGATGTCAACATTGGCGGTAGCAGCAGAGGCAGTAACAGTGGTAAA 279
|||||||||||||| |||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 469 AGAAGCTCACTTAAACATGTCATCTTTGGCGGTAGCAGCGGAGGCAGTAACAGTGGTAAA 528
Query 280 GGGCTAGCCAACGATTTGTACTTAGATG 307
||||||||||| ||||||||||||||||
Sbjct 529 GGGCTAGCCAAGGATTTGTACTTAGATG 556
Score = 183 bits (99), Expect = 5e-45
Identities = 121/132 (92%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 307 GGAAATGAATTGGTCGGAGTTCATATGAGAAGTGATAAAGAAATCAATACGATGAAAGAC 366
||||| |||||||| | ||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct 667 GGAAACGAATTGGTTGAAGTTCATGTGAGAAGTGATAGAGAAATCAATATGATGAAAGAC 726
Query 367 AAAGGAAAAGCAATATTCGACCTTAACAAAGCTATTTGGCCAAAAGATGAACCAGTTTCA 426
||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||| |||
Sbjct 727 AAAGGAAAAGCAATATTCGACCTTAACGAAGCTGTTTGGCCAAGAGATGAAGCAGTATCA 786
Query 427 AACACATTTGAG 438
||||||||||||
Sbjct 787 AACACATTTGAG 798
Score = 156 bits (84), Expect = 1e-36
Identities = 95/100 (95%), Gaps = 1/100 (1%)
Strand=Plus/Plus
Query 437 AGAAAAGTGGAGCATCACTGAAAAATTGTGAGCATTCTTGGATATGGAAGCAAGGTCTTG 496
|||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 879 AGAAAAGTGGAGCAACACTGACAAATTGTGAGCATTCTTGGATATGGAAGCAAGATCTTG 938
Query 497 GTCATACTTGTTGGATATGTGGTATCATTGACAAGGATCA 536
||||||||||||||||||||||||||||| |||||| |||
Sbjct 939 GTCATACTTGTTGGATATGTGGTATCATTAACAAGG-TCA 977
Score = 63.9 bits (34), Expect = 7e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1 ATGGATGCAAAGAGGAAATTATCACAAGAGAAAG 34
||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGCAAAGAGGAAATTATCACAAGAGAAAG 34
> AT3G32280.1 | Symbols: | ATP-dependent helicase family protein
| chr3:13233832-13240154 FORWARD LENGTH=1425
Length=1425
Score = 1140 bits (617), Expect = 0.0
Identities = 746/809 (92%), Gaps = 6/809 (1%)
Strand=Plus/Plus
Query 34 GACCTACATCAAAACGATGATAAAAGAAAAAAGGTTATGACACTAGAAACTCAAGAAGCC 93
||||| |||||||||| |||||||| |||||||| || ||||||||| |||||||||
Sbjct 319 GACCTGTATCAAAACGACGATAAAAGGAAAAAGGTCGTGGCACTAGAAAATCAAGAAGCT 378
Query 94 AGTGGAAGTTGTGTCGATCAAAATGTGGCTCATTGGTTTTCGAAAACGGAGTTCAATGGG 153
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 379 GGTGGAAGTTGTGTCGATGGAAATGTGGCTCATTGGTTTTCGAAAACTAAGTTCAATGGA 438
Query 154 TTAATGGACGTACCAATTGTGTATTTGGCCTCGGAAGAAAATATAGTTAAGAATGATCAT 213
||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
Sbjct 439 TTAGTGGACGTACCAATTGTGTATTTGGCCTTGGAAGAAAATGTAGTTAAGAATGATCTT 498
Query 214 ACAATCG-GAAGCTCACTTAAAGATGTCAACATTGGCGGTAGCAGCAGAGGCAGTAACAG 272
|| || | |||||||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 499 AC-ATTGAGAAGCTCACTTAAACATGTCATCATTGGCGGTAGCAGCGGAGGCAGTAACAG 557
Query 273 TGGTAAAGGGCTAGCCAACGATTTGTACTTAGATGGAAATGAATTGGTCGGAGTTCATA- 331
|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||| |
Sbjct 558 TGGTAAAGGGCTAGCCAATGATTTGTACTTAGATGTAAATGAATTGGTCGAAGTTCA-AG 616
Query 332 TGAGAAGTGATAAAGAAATCAATACGATGAAAGACAAAGGAAAAGCAATATTCGACCTTA 391
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 617 TGAGAAGTGATAAAGAAATCAATATGATGAAAGACAAAGGAAAAACAATATTCGACTTTA 676
Query 392 ACAAAGCTATTTGGCCAAAAGATGAACCAGTTTCAAACACATTTGAGAAAAGTGGAGCAT 451
|| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 677 ACGAAGCTATTTGGCCAAAAGATGAACCAATATCAAACACATTTGAGAAAAGTGGAGCAA 736
Query 452 CACTGAAAAATTGTGAGCATTCTTGGATATGGAAGCAAGGTCTTGGTCATACTTGTTGGA 511
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 CACTGACAAATTGTGAGCATTCTTGGATATGGAAGCAAGGTCTTGGTCATACTTGTTGGA 796
Query 512 TATGTGGTATCATTGACAAGGATCATCCATTGCCACCCGGATTCGGGTCGAATATCTGCA 571
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 797 TATGTGGTATCATTGACAAGGATCATCCGTTGCCACCCGGATTCGGATCGAATATCTGCA 856
Query 572 AAGATATCAAGTTGAGAGTTCCTAAAGATGGGTTTTTAGGAACTGGCATTTTCCCTCATC 631
||||||||||| ||||||||||||||||||| |||| ||||||||||||||| || ||||
Sbjct 857 AAGATATCAAGATGAGAGTTCCTAAAGATGGCTTTTCAGGAACTGGCATTTTTCCACATC 916
Query 632 CTTTGCTT-GAAAGTATTATGAAACCACATCACTACGAAATACTCAATTTTCTCTGCAAG 690
|||||| | ||| | ||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct 917 CTTTGCATAGAATG-ATTATGAAACCACATCACTTCGAGATACTCAATTTTCTCTACAAG 975
Query 691 AACTTGGTTGTGGAAAACTCAAACGGCTGCATCATAGCACAAATTCCTTTATCTGAAAAG 750
||||||||||||||||||||||| || ||||||||||| |||| ||| |||||||| |||
Sbjct 976 AACTTGGTTGTGGAAAACTCAAATGGATGCATCATAGCTCAAACTCCATTATCTGAGAAG 1035
Query 751 ACCTTCTTGATGATCAATTTCATATATGGTTACTTAGAAAAGCACCCAAATAGTAAACCT 810
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1036 ACCTTCTTGATGATCAGTTTCATCTATGGTTACTTAGAAAAGCACCCAAATAGTAAATCT 1095
Query 811 CTATTTGTGCTTCCTAAGTGGATGCTGAA 839
||||||||||||||||||||| || ||||
Sbjct 1096 CTATTTGTGCTTCCTAAGTGGGTGTTGAA 1124
Score = 394 bits (213), Expect = 2e-108
Identities = 275/304 (90%), Gaps = 8/304 (3%)
Strand=Plus/Plus
Query 937 GTTCTAAAGCAATGGATCACAAA-CCGGAGTATTATCTTCTTAGGCACCAAGCAGTTCTC 995
||| |||||| |||||||| ||| ||||||||||||||||||||| |||| || |||||
Sbjct 1127 GTT-TAAAGCGATGGATCA-AAACCCGGAGTATTATCTTCTTAGGTGCCAAACAATTCTC 1184
Query 996 CAACATAGTATCTGATAACAGTGGTACAGAAGCTTCAGATTCTTGTAGGGAAATTCTCTT 1055
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1185 CAACATAGTATCTGATAACAGTGGTGCAGAAGCTTCAGATTCTTGTAGGGATATTCTCTT 1244
Query 1056 AAACATTCCTTCACTGGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGATGATGAG 1115
||| |||| ||| | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1245 AAATATTCTTTCGGTTGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGATGATGTG 1304
Query 1116 CTTTCTTAAGGCTGTTGCTCGTATCAAGACGCCACGA-AAGGTTTTACTCACTGGCACAC 1174
||||||||||| |||| ||||||| |||||||||| | |||||| ||||||||||| |||
Sbjct 1305 CTTTCTTAAGGTTGTTTCTCGTATTAAGACGCCAC-ATAAGGTTCTACTCACTGGCTCAC 1363
Query 1175 TATACCAAAACAACATTAAGGAGGTTTTCAACATTCTT-GATGTTGCTTTCCCTGAGTTT 1233
| ||| |||||||||||||||||||||||||||| ||| ||||||||||||||| | |||
Sbjct 1364 TGTACAAAAACAACATTAAGGAGGTTTTCAACAT-CTTTGATGTTGCTTTCCCTAA-TTT 1421
Query 1234 CTGA 1237
||||
Sbjct 1422 CTGA 1425
> AT3G32330.1 | Symbols: | DNA repair protein-related | chr3:13276082-13277155
FORWARD LENGTH=984
Length=984
Score = 1013 bits (548), Expect = 0.0
Identities = 673/732 (92%), Gaps = 14/732 (2%)
Strand=Plus/Plus
Query 931 TTAGAAGTTCTAAAGCAATGGATCACAAACC-GGAGTATTATCTTCTTAGGCACCAAGCA 989
||||| ||| |||||| |||||||| ||||| ||||||| ||||||||||| |||| ||
Sbjct 259 TTAGAGGTTTTAAAGCGATGGATCA-AAACCTGGAGTATAATCTTCTTAGGGGCCAAACA 317
Query 990 GTTCTCCAACATAGTATCTGATAACAGTGGTACAGAAGCTTCAGATTCTTGTAGGGAAAT 1049
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 318 ATTCTCCAACATAGTATCTGATAACAGTGGTGCAGAAGCTTCAGATTCTTGTAGGGATAT 377
Query 1050 TCTCTTAAACATTCCTTCACTGGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGAT 1109
|||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 378 TCTCTTAAACATTCTTTCGGTTGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGAT 437
Query 1110 GATGAGCTTTCTTAAGGCTGTTGCTCGTATCAAGACGCCACGA-AAGGTTTTACTCACTG 1168
||||||||||||||||| |||| |||||||||||||||||| | |||||| |||||||||
Sbjct 438 GATGAGCTTTCTTAAGGTTGTTTCTCGTATCAAGACGCCAC-ATAAGGTTCTACTCACTG 496
Query 1169 GCACACTATACCAAAACAACATTAAGGAGGTTTTCAACATTCTTGATGTTGCTTTCCCTG 1228
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 497 GCTCACTATACCAAAACAACATTAAGGAGGTTTTCAACATTCTTGATGTTGCTTTCCCCG 556
Query 1229 AGTTTCTGAAGCATAACCAAATTGGTAAAAATATCAGCAAATTC-TTGAATGTTGAAGCT 1287
|||||||||||||||||||||||||||||||| |||| ||| || || ||||||||||||
Sbjct 557 AGTTTCTGAAGCATAACCAAATTGGTAAAAATTTCAGAAAACTCCTT-AATGTTGAAGCT 615
Query 1288 GACGTTGATGGACCTTCAACGAATTTGAAGATGCCCCTATTTGATAAATTGGAAGAAGCT 1347
|| | | | ||||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 616 GA--T-G--G-ACCTTCAACGAATTTGAAGATGCCCTTGTTTGATAAATTGGAGGAAGCT 669
Query 1348 TTGCTTAGTCAAGATTCTGATCATGGGGACAAGATTGGTTACTTAACCGAACTAAGGATG 1407
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||
Sbjct 670 TTGCTTAGTCAAGATTCTGATCATGGAGACAAGATTTGTTACTTAACCGAACTAAAGATG 729
Query 1408 TTGACAAACAAGGTTATCTACAATTACAAAGGAGAGTGTCTCCTTGATCTCCCGGGATTG 1467
|||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 730 TTGACAAACAAGGTTATCTACAATCACAAAGGAGAGTGTCTCCTTGAAGTTCCGGGATTG 789
Query 1468 CTGGACTTCACGGTGGTCTTAAACCCGACATTAAGCCAAAAGTCAGAATGGGAGACTGAA 1527
|||||||||||||||||||||| ||||||| |||||||||||||| ||||||| ||||
Sbjct 790 ATGGACTTCACGGTGGTCTTAAAACCGACATCAAGCCAAAAGTCAGCATGGGAGGTTGAA 849
Query 1528 AGAAACTCCAAAGGGAAAGGTTTCAAAACGTACTCTACCTTGAGCGGAATCACT-CTTCA 1586
||||| ||||| |||||||||||||||| |||||||||||| |||||||||| | |||||
Sbjct 850 AGAAAGTCCAATGGGAAAGGTTTCAAAAAGTACTCTACCTTAAGCGGAATCA-TGCTTCA 908
Query 1587 CCCACTGCTACGTGCTTTCTCAAACCGGGCAAAAGGTCTTCCTGCCCCTAACGAGGATGA 1646
|||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 909 CCCACTGCTATGTGCTTTCTCAGACCGGGCAAAAGGTCTTCCTGCCCCCAACGAGGATGA 968
Query 1647 GATGGATGAGAT 1658
||||||||||||
Sbjct 969 GATGGATGAGAT 980
Score = 351 bits (190), Expect = 1e-95
Identities = 235/257 (91%), Gaps = 2/257 (1%)
Strand=Plus/Plus
Query 584 TGAGAGTTCCTAAAGATGGGTTTTTAGGAACTGGCATTTTCCCTCATCCTTTGCTTGAAA 643
||||||||||||||||||| |||| |||||||||||||||||| |||||||| | | |||
Sbjct 2 TGAGAGTTCCTAAAGATGGCTTTTCAGGAACTGGCATTTTCCCACATCCTTTCCAT-AAA 60
Query 644 GT-ATTATGAAACCACATCACTACGAAATACTCAATTTTCTCTGCAAGAACTTGGTTGTG 702
| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||
Sbjct 61 ATGATTATGAAACCACATCACTTCGAGATACTCAATTTTCTCTACAAGAACTTGGTTGTG 120
Query 703 GAAAACTCAAACGGCTGCATCATAGCACAAATTCCTTTATCTGAAAAGACCTTCTTGATG 762
||||||||||| || ||||||||||| |||| ||| |||||||| |||||||||||||||
Sbjct 121 GAAAACTCAAATGGATGCATCATAGCTCAAACTCCATTATCTGAGAAGACCTTCTTGATG 180
Query 763 ATCAATTTCATATATGGTTACTTAGAAAAGCACCCAAATAGTAAACCTCTATTTGTGCTT 822
|||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 ATCAGTTTCATCTATGGTTACTTAGAAAAGCACCCAAATAGTAAATCTCTATTTGTGCTT 240
Query 823 CCTAAGTGGATGCTGAA 839
||||||||| || ||||
Sbjct 241 CCTAAGTGGGTGTTGAA 257
> AT3G31900.1 | Symbols: | ATP-dependent helicase family protein
| chr3:12875071-12877422 FORWARD LENGTH=1182
Length=1182
Score = 1005 bits (544), Expect = 0.0
Identities = 706/782 (90%), Gaps = 20/782 (3%)
Strand=Plus/Plus
Query 1 ATGGATGCAAAGAGGAAATTATCACAAGAGAAAGACCTACATCAAAACGATGATAAAAGA 60
|||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 1 ATGGATGCAAAGAGGAAATTCTCACAAGAGAAAGACCTGTATCAAAACGACGATAAAAGG 60
Query 61 AAAAAGGTTATGACACTAGAAACTCAAGAAGCCAGTGGAAGTTGTGTCGATCAAAATGTG 120
|||||||| || ||||||||| ||||||| | ||||||||||||||||| |||||||
Sbjct 61 AAAAAGGTCGTGGCACTAGAAAATCAAGAAACTGGTGGAAGTTGTGTCGATGGAAATGTG 120
Query 121 GCTCATTGGTTTTCGAAAACGGAGTTCAATGGGTTAATGGACGTACCAATTGTGTATTTG 180
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 121 GCTCATTGGTTTTCGAAAACTAAGTTCAATGGGTTAGTGGACGTACCAATTGTGTATTTG 180
Query 181 GCCTCGGAAGAAAATATAGTTAAGAATGATCATACAATCG-GAAGCTCACTTAAAGATGT 239
|||| |||||||||| ||||||||||||||| ||| || | |||||||||||||| ||||
Sbjct 181 GCCTTGGAAGAAAATGTAGTTAAGAATGATCTTAC-ATTGAGAAGCTCACTTAAACATGT 239
Query 240 CAACATTGGCGGTAGCAGCAGAGGCAGTAACAGTGGTAAAGGGCTAGCCAACGATTTGTA 299
|| ||||||| ||| |||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 CATCATTGGCAGTATCAGCGGAGGCAGTAACAGTGGTAAAGGGCTAGCCAAGGATTTGTA 299
Query 300 CTTAGATGGAAATGAATTGGTCGGAGTTCATA-TGAGAAGTGATAAAGAAATCAATACGA 358
|||||||| |||||||||||||| |||||| | |||||||||||||||||||||||| ||
Sbjct 300 CTTAGATGTAAATGAATTGGTCGAAGTTCA-AGTGAGAAGTGATAAAGAAATCAATATGA 358
Query 359 TGAAAGACAAAGGAAAAGCAATATTCGACCTTAACAAAGCTATTTGGCCAAAAGATGAAC 418
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 TGAAAGACAAAGGAAAAGCAATATTCGACCTTAACGAAGCTATTTGGCCAAAAGATGAAC 418
Query 419 CAGTTTCAAACACATTTGAGAAAAGTGGAGCATCACTGAAAAATTGTGAGCATTCTTGGA 478
|| | ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct 419 CAATATCAAACACATTTGAGAAAAGTAGAGCAACACTGACAAATTGTGAGCATTCTTGGA 478
Query 479 TATGGAAGCAAGGTCTTGGTCATACTTGTTGGATATGTGGTATCATTGACAAGGATCATC 538
|||||||||||||| ||||| | ||||||| ||||||| ||||||||||||
Sbjct 479 TATGGAAGCAAGGTTTTGGT-------G----ATATGTGCTATCATTTACAAGGATCATC 527
Query 539 CATTGCCACCCGGATTCGGGTCGAATATCTGCAAAGATATCAAGTTGAGAGTTCCTAAAG 598
| |||||||| |||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct 528 CGTTGCCACC-GGATTCAGATCGAATATCTGCAAAGATATCAAGATGAGAGTTCCTAAAG 586
Query 599 ATGGGTTTTTAGGAACTGGCATTTTCCCTCATCCTTTGCTTGAAA-GTATTATGAAACCA 657
|| | |||| |||||||||||||||||| |||||||||| | ||| | ||||||||||||
Sbjct 587 ATAGCTTTTCAGGAACTGGCATTTTCCCACATCCTTTGCATAAAATG-ATTATGAAACCA 645
Query 658 CATCACTACGAAATACTCAATTTTCTCTGCAAGAACTTGGTTGTGGAAAACTCAAACGGC 717
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 646 CATCACTTCGAGATACTCAATTTTCTCTGCAAGAACTTGGTTGTGGAAAACTCAAATGGA 705
Query 718 TGCATCATAGCA-CAAATTCCTTTATCTGAAAAGACCTTCTTGATGATCAATTTCATATA 776
|||||||||| | |||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct 706 TGCATCATAG-ATCAAACTCCTTTATCTGAAAAGACCTTCTTGATGATCAGTTTCATCTA 764
Query 777 TG 778
||
Sbjct 765 TG 766
Score = 459 bits (248), Expect = 7e-128
Identities = 307/334 (92%), Gaps = 10/334 (3%)
Strand=Plus/Plus
Query 983 CCAAGCAGTTCTCCAACATAGTATCTGATAACAGTGGTACAGAAGCTTCAGATTCTTGTA 1042
|||| || |||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 854 CCAAACAATTCTCCAACATAGTATCTGATAACAGTGGTGCAGAAGCTTCAGACTCTTGTA 913
Query 1043 GGGAAATTCTCTTAAACATTCCTTCACTGGTTGTTTTCGACAGAGGAACTGATCCGAGGA 1102
|||| ||||| |||||||||| ||| | |||||||||| ||||||||||||||||||||
Sbjct 914 GGGATATTCTTTTAAACATTCTTTCGGTTGTTGTTTTCGGCAGAGGAACTGATCCGAGGA 973
Query 1103 ACGAGATGATGAGCTTTCTTAAGGCTGTTGCTCGTATCAAGACGCCACGA-AAGGTTTTA 1161
|||||||||||||||||||||||| |||| |||||||||||||||||| | |||||| ||
Sbjct 974 ACGAGATGATGAGCTTTCTTAAGGTTGTTTCTCGTATCAAGACGCCAC-ATAAGGTTCTA 1032
Query 1162 CTCACTGGCACACTATACCAAAACAACATTAAGGAGGTTTTCAACATTCTTGATGTTGCT 1221
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CTCACTGGCTCACTATACCAAAACAACATTAAGGAGGTTTTCAACATTCTTGATGTTGCT 1092
Query 1222 TTCCCTGAGTTTCTGAAGCATAACCAAATTGGTAAAAATATCAGCAAATTC-TTGAATGT 1280
||||||||||||||||||||||||||||||||||||||| |||| |||||| || |||||
Sbjct 1093 TTCCCTGAGTTTCTGAAGCATAACCAAATTGGTAAAAATTTCAGAAAATTCCTT-AATGT 1151
Query 1281 TGAAGCTGACGTTGATGGACCTTCAACGAATTTG 1314
||||||||| | | || |||||||||||||||
Sbjct 1152 TGAAGCTGA--T-G--GG-CCTTCAACGAATTTG 1179
> AT3G32370.1 | Symbols: | pseudogene, similar to Hypothetical
protein, blastp match of 49% identity and 3.6e-40 P-value to
GP|20219037|gb|AAM15781.1|AC104428_2|AC104428 Hypothetical
protein {Oryza sativa (japonica cultivar-group)} | chr3:13289193-13289828
FORWARD LENGTH=636
Length=636
Score = 891 bits (482), Expect = 0.0
Identities = 568/610 (93%), Gaps = 3/610 (0%)
Strand=Plus/Plus
Query 1667 AAATCGACGTAACAGATGGCGTT-AAAACAAACTTCTTCATGGGTTTAGTGAAGTTATGC 1725
|||||||||||||||||||| || |||| ||| ||||||||||||||||| |||||||||
Sbjct 1 AAATCGACGTAACAGATGGC-TTAAAAAAAAAGTTCTTCATGGGTTTAGTAAAGTTATGC 59
Query 1726 GATTACACGAATGAGAAGATTCTTGTAGTGAGCCAATATGTCATCCCATTGATATTCCTC 1785
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 60 GGTTACACGAATGAGAAGATTCTTGTAGTGAGCCAATATGTCATCCCATTTATATTCCTC 119
Query 1786 CAAAGACTCGTGGCTAAGATTAAAGGTTGGAAAGATGGCAAAGAAACATTCATGATTAAA 1845
|||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| |||
Sbjct 120 CAAAGACTAGTGGCTAAGATTAAAGGTTGGAAAGATGGCAAACAAACCTTCATGATCAAA 179
Query 1846 GGTGATACAAGTCTTTCTGCTCGAGAAATGTCGATTAATCAATTCAACAACTCGAATGAT 1905
||||||||||||| |||||| ||||||| || ||||||||||| ||||||||| |||||
Sbjct 180 GGTGATACAAGTCAGTCTGCTTGAGAAATATCAATTAATCAATTTAACAACTCGCATGAT 239
Query 1906 GCGAAAATCTTCTTTGTATCCATTAAAGCGTGTAATGAGCAGATCGGTCTTACGGGTGCA 1965
|||||||||||||||| |||||| ||||||||||||||||| |||| |||| ||||||||
Sbjct 240 GCGAAAATCTTCTTTGCATCCATCAAAGCGTGTAATGAGCATATCGCTCTTCCGGGTGCA 299
Query 1966 ACAAGGGTTTTAATGCTCGACATCATCGCCAACCCTTGTATGGCTCGACAAGCCATAGAG 2025
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 300 ACAAGGGTTTTAATGCTTGACATCATCTCCAACCCTTGTATGGCTCGACAAGCCATACAG 359
Query 2026 CTGGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTATAGGCTGGTGGCTGCTGAT 2085
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 360 CTCGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTATAGGCTTGTGGCTGCGGAT 419
Query 2086 ACATCAGAAGAAGATGAAGAAATAATCGCAGCTAAAAAGGAGATAATTTCTGGAATATGG 2145
|||||| ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 420 ACATCAAAAGAAGACGAAGACATAATAGCAGCTAAAAAGGAGATAATTTCTGGAATATGG 479
Query 2146 TTT-GATGGGAAGACTTATCCTATAGATGGAAAATTTTGTATTCCGACCATTGATGGAGA 2204
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 480 TTTTGATGGGAAGACTTATCCTATAGATGAAAAATTTTGTATTCCGACCATTGATGGAAA 539
Query 2205 GTACAGCAATGATTACTTCCTTGGAGCTTCATATATGAGGGAAGATATCAAAACCATATA 2264
||||| ||| |||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 540 CTACAGTAATCATTACTTCCTTGGAGCTTCATATATGAGGGAAGACATCAAAAGCATATA 599
Query 2265 CAAAAGGTTG 2274
|||||||||
Sbjct 600 TAAAAGGTTG 609
> AT3G32310.1 | Symbols: | pseudogene, similar to Hypothetical
protein, blastp match of 45% identity and 2.6e-33 P-value to
GP|20219037|gb|AAM15781.1|AC104428_2|AC104428 Hypothetical
protein {Oryza sativa (japonica cultivar-group)} | chr3:13263527-13264055
FORWARD LENGTH=529
Length=529
Score = 750 bits (406), Expect = 0.0
Identities = 474/508 (93%), Gaps = 0/508 (0%)
Strand=Plus/Plus
Query 1767 CATCCCATTGATATTCCTCCAAAGACTCGTGGCTAAGATTAAAGGTTGGAAAGATGGCAA 1826
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 CATCCCATTGATATTCCTCCAAAGACTAGTGGCTAAGATTAAAGGTTGGAAAGATGGCAA 60
Query 1827 AGAAACATTCATGATTAAAGGTGATACAAGTCTTTCTGCTCGAGAAATGTCGATTAATCA 1886
| |||| |||||||| |||||||||||||||| |||||| ||||||| || ||||||||
Sbjct 61 ATAAACCTTCATGATCAAAGGTGATACAAGTCAGTCTGCTTGAGAAATATCAATTAATCA 120
Query 1887 ATTCAACAACTCGAATGATGCGAAAATCTTCTTTGTATCCATTAAAGCGTGTAATGAGCA 1946
||| ||||||||| | ||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 121 ATTTAACAACTCGCACGATGCGAAAATCTTCTTTGCATCCATCAAAGCGTGTAATGAGCA 180
Query 1947 GATCGGTCTTACGGGTGCAACAAGGGTTTTAATGCTCGACATCATCGCCAACCCTTGTAT 2006
||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 181 GATCGCTCTTCCGGGTGCAACAAGGGTTTTAATGCTTGACATCATCTCCAACCCTTGTAT 240
Query 2007 GGCTCGACAAGCCATAGAGCTGGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTA 2066
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCTCAACAAGCCATAGAGCTCGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTA 300
Query 2067 TAGGCTGGTGGCTGCTGATACATCAGAAGAAGATGAAGAAATAATCGCAGCTAAAAAGGA 2126
|||||| |||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 301 TAGGCTTGTGGCTGCGGATACATCAGAAGAAGACGAAGACATAATAGCAGCTAAAAAGGA 360
Query 2127 GATAATTTCTGGAATATGGTTTGATGGGAAGACTTATCCTATAGATGGAAAATTTTGTAT 2186
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GATAATTTCTGGAATATGGTTTGATGGGAAGACTTATCCTATAGATGAAAAATTTTGTAT 420
Query 2187 TCCGACCATTGATGGAGAGTACAGCAATGATTACTTCCTTGGAGCTTCATATATGAGGGA 2246
||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||
Sbjct 421 GCCGACCATTGATGGAAACTACGGTAATGATTACTTCCTTGGAGCTTCATATATGAGGGA 480
Query 2247 AGATATCAAAACCATATACAAAAGGTTG 2274
||| ||||||| |||||| |||||||||
Sbjct 481 AGACATCAAAAGCATATATAAAAGGTTG 508
> AT3G32320.1 | Symbols: | transposable element gene | chr3:13270925-13275593
REVERSE LENGTH=4669
Length=4669
Score = 158 bits (85), Expect = 3e-37
Identities = 91/94 (97%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 437 AGAAAAGTGGAGCATCACTGAAAAATTGTGAGCATTCTTGGATATGGAAGCAAGGTCTTG 496
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 237 AGAAAAGTGGAGCAACACTGGCAAATTGTGAGCATTCTTGGATATGGAAGCAAGGTCTTG 178
Query 497 GTCATACTTGTTGGATATGTGGTATCATTGACAA 530
||||||||||||||||||||||||||||||||||
Sbjct 177 GTCATACTTGTTGGATATGTGGTATCATTGACAA 144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117218272575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5