BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg344097 Length=2361 Score E Sequences producing significant alignments: (Bits) Value AT2G25020.1 | Symbols: | pseudogene, similar to Hypothetical p... 2259 0.0 AT3G32280.1 | Symbols: | ATP-dependent helicase family protein... 1140 0.0 AT3G32330.1 | Symbols: | DNA repair protein-related | chr3:132... 1013 0.0 AT3G31900.1 | Symbols: | ATP-dependent helicase family protein... 1005 0.0 AT3G32370.1 | Symbols: | pseudogene, similar to Hypothetical p... 891 0.0 AT3G32310.1 | Symbols: | pseudogene, similar to Hypothetical p... 750 0.0 AT3G32320.1 | Symbols: | transposable element gene | chr3:1327... 158 3e-37 > AT2G25020.1 | Symbols: | pseudogene, similar to Hypothetical protein, contains similarity to Swiss-Prot:Q61687 transcriptional regulator ATRX (X-linked nuclear protein, Heterochromatin protein 2, HP1 alpha-interacting protein, HP1-BP38 protein) (Mus musculus); blastp match of 38% identity and 2.2e-95 P-value to GP|20219037|gb|AAM15781.1|AC104428_2|AC104428 Hypothetical protein {Oryza sativa (japonica cultivar-group)} | chr2:10639089-10642250 FORWARD LENGTH=3162 Length=3162 Score = 2259 bits (1223), Expect = 0.0 Identities = 1490/1616 (92%), Gaps = 29/1616 (2%) Strand=Plus/Plus Query 530 AGGATCATCCATTGCCACCCGGATTCGGGTCGAATATCTGCAAAGATATCAAGTTGAGAG 589 |||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||||| Sbjct 1568 AGGATCATCCGTTGCCACCCGGATTCGGATCAAATATCTGCAAAGATATCAAGATGAGAG 1627 Query 590 TTCCTAAAGATGGGTTTTTAGGAACTGGCATTTTCCCTCATCCTTTGCTTGAAAGT-ATT 648 |||| |||||||| |||| |||||||||||||||||| |||||||||| | ||| | ||| Sbjct 1628 TTCCAAAAGATGGATTTTCAGGAACTGGCATTTTCCCACATCCTTTGCAT-AAAATGATT 1686 Query 649 ATGAAACCACATCACTACGAAATACTCAATTTTCTCTGCAAGAACTTGGTTGTGGAAAAC 708 |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 1687 ATGAAACCACATCACTTCGAGATATTCAATTTTCTCTGCAAGAACTTGGTTGTGGAAAAC 1746 Query 709 TCAAACGGCTGCATCATAGCACAAATTCCTTTATCTGAAAAGACCTTCTTGATGATCAAT 768 ||||| || ||||||||||| |||| |||||||||||||||||||||||||||||||| | Sbjct 1747 TCAAATGGATGCATCATAGCTCAAACTCCTTTATCTGAAAAGACCTTCTTGATGATCAGT 1806 Query 769 TTCATATATGGTTACTTAGAAAAGCACCCAAATAGTAAACCTCTATTTGTGCTTCCTAAG 828 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1807 TTCATCTATGGTTACTTAGAAAAGCACCCAAATAGTAAACCTCTATTTGTGCTTCCTAAA 1866 Query 829 TGGATGCTGAATTTTTGGAAAA-AAGATTTTGGTGAATTGAAGGTCAATGACCTCGTGTT 887 ||| || |||| |||||||||| || | |||||||||||||||||||||||||| ||||| Sbjct 1867 TGGGTGTTGAACTTTTGGAAAACAA-AGTTTGGTGAATTGAAGGTCAATGACCTTGTGTT 1925 Query 888 GCTAGACTTCTACTCGGCGAAGGCACA-TACCCGATATCAGCAGTTAGAAGTTCTAAAGC 946 |||||||||||||||||| ||||| | |||||||| |||||||||||| |||||||| | Sbjct 1926 GCTAGACTTCTACTCGGCAAAGGC-GAGTACCCGATCTCAGCAGTTAGAGGTTCTAAACC 1984 Query 947 AATGGATCACAAA-CCGGAGTATTATCTTCTTAGGCACCAAGCAGTTCTCCAACATAGTA 1005 |||||||| ||| |||||||||||||||||||||| |||| || |||||||||||| || Sbjct 1985 GATGGATCA-AAACCCGGAGTATTATCTTCTTAGGCGCCAAACAATTCTCCAACATAATA 2043 Query 1006 TCTGATAACAGTGGTACAGAAGCTTCAGATTCTTGTAGGGAAATTCTCTTAAACATTCCT 1065 ||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| Sbjct 2044 TCTGATAACAGTGGTGCAGAAGCTTCAGATTCTTGTAGGGATATACTCTTAAACATTCCT 2103 Query 1066 TCACTGGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGATGATGAGCTTTCTTAAG 1125 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2104 TCGGTGGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGATGATGAGCTTTCTTAAG 2163 Query 1126 GCTGTTGCTCGTATCAAGACGCCACGA-AAGGTTTTACTCACTGGCACACTATACCAAAA 1184 | ||||||||||||||||||||||| | |||||| ||||||||||| ||||||||||||| Sbjct 2164 GTTGTTGCTCGTATCAAGACGCCAC-ATAAGGTTCTACTCACTGGCTCACTATACCAAAA 2222 Query 1185 CAACATTAAGGAGGTTTTCAACATTCTTGATGTTGCTTTCCCTGAGTTTCTGAAGCATAA 1244 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2223 CAACATTAAGGAGGTTTTCAACATTCTTGATGTTGTTTTCCCTGAGTTTCTGAAGCATAA 2282 Query 1245 CCAAATTGGTAAAAATATCAGCAAATTC-TTGAATGTTGAAGCTGACGTTGATGGACCTT 1303 || |||||||||||||||||| |||||| || |||||||||||||| | | | ||||| Sbjct 2283 CCGAATTGGTAAAAATATCAGAAAATTCCTT-AATGTTGAAGCTGA--T-G--G-ACCTT 2335 Query 1304 CAACGAATTTGAAGATGCCCCTATTTGATAAATTGGAAGAAGCTTTGCTTAGTCAAGATT 1363 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 2336 CAACGAATTTGAAGATGCCCTTGTTTGATAAATTGGAAGAAGCTTTGCTTAGTCAAGATT 2395 Query 1364 CTGATCATGGGGACAAGATTGGTTACTTAACCGAACTAAGGATGTTGACAAACAAGGTTA 1423 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 2396 CTGATCATGGAGACAAGATTAGTTACTTAACCGAACTAAGGATGTTGACAAACAAGTTTA 2455 Query 1424 TCTACAATTACAAAGGAGAGTGTCTCCTTGATCTCCCGGGATTGCTGGACTTCACGGTGG 1483 | |||||| |||||| ||||| ||||||||| ||||||||||| ||||||||||||||| Sbjct 2456 TTTACAATCACAAAGAAGAGTTTCTCCTTGAGGTCCCGGGATTGATGGACTTCACGGTGG 2515 Query 1484 TCTTAAACCCGACATTAAGCCAAAAGTCAGAATGGGAGACTGAAAGAAACTCCAAAGGGA 1543 ||||||| |||||||||||||||||||||| |||||||| |||| |||| |||||||||| Sbjct 2516 TCTTAAAACCGACATTAAGCCAAAAGTCAGCATGGGAGATTGAATGAAAGTCCAAAGGGA 2575 Query 1544 AAGGTTTCAAAACGTACTCTACCTTGAGCGGAATCACT-CTTCACCCACTGCTACGTGCT 1602 |||||||||||||||| ||||||||||||||||||| | |||||||||| |||| ||||| Sbjct 2576 AAGGTTTCAAAACGTATTCTACCTTGAGCGGAATCA-TGCTTCACCCACAGCTATGTGCT 2634 Query 1603 TTCTCAAACCGGGCAAAAGGTCTTCCTGCCCCTAACGAGGATGAGATGGATGAGATTATC 1662 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 2635 TTCTCAGACCGGGCAAAAGGTCTTCCTGCCCCCAACGAGGATGAGATGGATGAGATCATC 2694 Query 1663 AAAGAAATCGACGTAACAGATGGCGTTAAAACAAACTTCTTCATGGGTTTAGTGAAGTTA 1722 |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 2695 AAAGAAATTGACGTAACAGATGGCGTAAAAACAAAGTTCTTCATGGGTTTAGTAAAGTTA 2754 Query 1723 TGCGATTACACGAATGAGAAGATTCTTGTAGTGAGCCAATATGTCATCCCATTGATATTC 1782 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2755 TGCGGTTACACGAATGAGAAGATTCTTGTAGTGAGCCAATGTGTCATCCCATTGATATTC 2814 Query 1783 CTCCAAAGACTCGTGGCTAAGATTAAAGGTTGGAAAGATGGCAAAGAAACATTCATGATT 1842 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2815 CTCCAAAGACTAGTGGCTAAGATTAAAGGTTGGAAAGATGGCAAAGAAACCTTCATGATC 2874 Query 1843 AAAGGTGATACAAGTCTTTCTGCTCGAGAAATGTCGATTAATCAATTCAACAACTCGA-A 1901 |||||||||||||||| |||||||| | | | ||||||||||| |||||||| | | Sbjct 2875 AAAGGTGATACAAGTCATTCTGCTC-A----T--CAATTAATCAATTTAACAACTC-ACA 2926 Query 1902 TGATGCGAAAATCTTCTTTGTATCCATTAAAGCGTGTAATGAGCAGATCGGTCTTACGGG 1961 |||||| ||||||||||||| |||||| |||||||||||||||||||| | |||| |||| Sbjct 2927 TGATGCAAAAATCTTCTTTGCATCCATCAAAGCGTGTAATGAGCAGATAGCTCTTCCGGG 2986 Query 1962 TGCAACAAGGGTTTTAATGCTCGACATCATCGCCAACCCTTGTATGGCTCGACAAGCCAT 2021 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 2987 TGCAACAAGGGTTTTAATGCTTGACATCATCGCAAACCCTTGTATGGCTCGACAAGCCAT 3046 Query 2022 AGAGCTGGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTATAGGCTGGTGGCTGC 2081 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3047 AGAGTTGGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTATAGGCTTGTGGCTGC 3106 Query 2082 TGATACATCAGAAGAAGATGAAGAAATAATCGCAGCTAAAAAGGAGATAATTTCTG 2137 |||||||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct 3107 GGATACATCAGAAGAAGGCGAAGACATAATAACAGCTAAAAAGGAGATAATTTCTG 3162 Score = 344 bits (186), Expect = 2e-93 Identities = 241/268 (90%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 41 ATCAAAACGATGATAAAAGAAAAAAGGTTATGACACTAGAAACTCAAGAAGCCAGTGGAA 100 |||||||||| |||||||| |||||||| || ||||||||| ||||||||| | |||| Sbjct 290 ATCAAAACGACGATAAAAGGAAAAAGGTCGTGGCACTAGAAAATCAAGAAGCTGGGGGAA 349 Query 101 GTTGTGTCGATCAAAATGTGGCTCATTGGTTTTCGAAAACGGAGTTCAATGGGTTAATGG 160 ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| || Sbjct 350 GTTGTATCGATGGAAATGTGGCTCATTGGTTTTCGAAAACTAAGTTCAATGGGTTGGTGA 409 Query 161 ACGTACCAATTGTGTATTTGGCCTCGGAAGAAAATATAGTTAAGAATGATCATACAATCG 220 |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || | Sbjct 410 ACGTACCAATTGTGTATTTGGCCTTGGAAGAAAATATAGTTAAGAATGATCTTAC-ATTG 468 Query 221 -GAAGCTCACTTAAAGATGTCAACATTGGCGGTAGCAGCAGAGGCAGTAACAGTGGTAAA 279 |||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||| Sbjct 469 AGAAGCTCACTTAAACATGTCATCTTTGGCGGTAGCAGCGGAGGCAGTAACAGTGGTAAA 528 Query 280 GGGCTAGCCAACGATTTGTACTTAGATG 307 ||||||||||| |||||||||||||||| Sbjct 529 GGGCTAGCCAAGGATTTGTACTTAGATG 556 Score = 183 bits (99), Expect = 5e-45 Identities = 121/132 (92%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 307 GGAAATGAATTGGTCGGAGTTCATATGAGAAGTGATAAAGAAATCAATACGATGAAAGAC 366 ||||| |||||||| | ||||||| |||||||||||| ||||||||||| |||||||||| Sbjct 667 GGAAACGAATTGGTTGAAGTTCATGTGAGAAGTGATAGAGAAATCAATATGATGAAAGAC 726 Query 367 AAAGGAAAAGCAATATTCGACCTTAACAAAGCTATTTGGCCAAAAGATGAACCAGTTTCA 426 ||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||| ||| Sbjct 727 AAAGGAAAAGCAATATTCGACCTTAACGAAGCTGTTTGGCCAAGAGATGAAGCAGTATCA 786 Query 427 AACACATTTGAG 438 |||||||||||| Sbjct 787 AACACATTTGAG 798 Score = 156 bits (84), Expect = 1e-36 Identities = 95/100 (95%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 437 AGAAAAGTGGAGCATCACTGAAAAATTGTGAGCATTCTTGGATATGGAAGCAAGGTCTTG 496 |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 879 AGAAAAGTGGAGCAACACTGACAAATTGTGAGCATTCTTGGATATGGAAGCAAGATCTTG 938 Query 497 GTCATACTTGTTGGATATGTGGTATCATTGACAAGGATCA 536 ||||||||||||||||||||||||||||| |||||| ||| Sbjct 939 GTCATACTTGTTGGATATGTGGTATCATTAACAAGG-TCA 977 Score = 63.9 bits (34), Expect = 7e-09 Identities = 34/34 (100%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 1 ATGGATGCAAAGAGGAAATTATCACAAGAGAAAG 34 |||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATGCAAAGAGGAAATTATCACAAGAGAAAG 34 > AT3G32280.1 | Symbols: | ATP-dependent helicase family protein | chr3:13233832-13240154 FORWARD LENGTH=1425 Length=1425 Score = 1140 bits (617), Expect = 0.0 Identities = 746/809 (92%), Gaps = 6/809 (1%) Strand=Plus/Plus Query 34 GACCTACATCAAAACGATGATAAAAGAAAAAAGGTTATGACACTAGAAACTCAAGAAGCC 93 ||||| |||||||||| |||||||| |||||||| || ||||||||| ||||||||| Sbjct 319 GACCTGTATCAAAACGACGATAAAAGGAAAAAGGTCGTGGCACTAGAAAATCAAGAAGCT 378 Query 94 AGTGGAAGTTGTGTCGATCAAAATGTGGCTCATTGGTTTTCGAAAACGGAGTTCAATGGG 153 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 379 GGTGGAAGTTGTGTCGATGGAAATGTGGCTCATTGGTTTTCGAAAACTAAGTTCAATGGA 438 Query 154 TTAATGGACGTACCAATTGTGTATTTGGCCTCGGAAGAAAATATAGTTAAGAATGATCAT 213 ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | Sbjct 439 TTAGTGGACGTACCAATTGTGTATTTGGCCTTGGAAGAAAATGTAGTTAAGAATGATCTT 498 Query 214 ACAATCG-GAAGCTCACTTAAAGATGTCAACATTGGCGGTAGCAGCAGAGGCAGTAACAG 272 || || | |||||||||||||| |||||| |||||||||||||||| ||||||||||||| Sbjct 499 AC-ATTGAGAAGCTCACTTAAACATGTCATCATTGGCGGTAGCAGCGGAGGCAGTAACAG 557 Query 273 TGGTAAAGGGCTAGCCAACGATTTGTACTTAGATGGAAATGAATTGGTCGGAGTTCATA- 331 |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||| | Sbjct 558 TGGTAAAGGGCTAGCCAATGATTTGTACTTAGATGTAAATGAATTGGTCGAAGTTCA-AG 616 Query 332 TGAGAAGTGATAAAGAAATCAATACGATGAAAGACAAAGGAAAAGCAATATTCGACCTTA 391 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| Sbjct 617 TGAGAAGTGATAAAGAAATCAATATGATGAAAGACAAAGGAAAAACAATATTCGACTTTA 676 Query 392 ACAAAGCTATTTGGCCAAAAGATGAACCAGTTTCAAACACATTTGAGAAAAGTGGAGCAT 451 || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 677 ACGAAGCTATTTGGCCAAAAGATGAACCAATATCAAACACATTTGAGAAAAGTGGAGCAA 736 Query 452 CACTGAAAAATTGTGAGCATTCTTGGATATGGAAGCAAGGTCTTGGTCATACTTGTTGGA 511 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 737 CACTGACAAATTGTGAGCATTCTTGGATATGGAAGCAAGGTCTTGGTCATACTTGTTGGA 796 Query 512 TATGTGGTATCATTGACAAGGATCATCCATTGCCACCCGGATTCGGGTCGAATATCTGCA 571 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 797 TATGTGGTATCATTGACAAGGATCATCCGTTGCCACCCGGATTCGGATCGAATATCTGCA 856 Query 572 AAGATATCAAGTTGAGAGTTCCTAAAGATGGGTTTTTAGGAACTGGCATTTTCCCTCATC 631 ||||||||||| ||||||||||||||||||| |||| ||||||||||||||| || |||| Sbjct 857 AAGATATCAAGATGAGAGTTCCTAAAGATGGCTTTTCAGGAACTGGCATTTTTCCACATC 916 Query 632 CTTTGCTT-GAAAGTATTATGAAACCACATCACTACGAAATACTCAATTTTCTCTGCAAG 690 |||||| | ||| | ||||||||||||||||||| ||| |||||||||||||||| |||| Sbjct 917 CTTTGCATAGAATG-ATTATGAAACCACATCACTTCGAGATACTCAATTTTCTCTACAAG 975 Query 691 AACTTGGTTGTGGAAAACTCAAACGGCTGCATCATAGCACAAATTCCTTTATCTGAAAAG 750 ||||||||||||||||||||||| || ||||||||||| |||| ||| |||||||| ||| Sbjct 976 AACTTGGTTGTGGAAAACTCAAATGGATGCATCATAGCTCAAACTCCATTATCTGAGAAG 1035 Query 751 ACCTTCTTGATGATCAATTTCATATATGGTTACTTAGAAAAGCACCCAAATAGTAAACCT 810 |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || Sbjct 1036 ACCTTCTTGATGATCAGTTTCATCTATGGTTACTTAGAAAAGCACCCAAATAGTAAATCT 1095 Query 811 CTATTTGTGCTTCCTAAGTGGATGCTGAA 839 ||||||||||||||||||||| || |||| Sbjct 1096 CTATTTGTGCTTCCTAAGTGGGTGTTGAA 1124 Score = 394 bits (213), Expect = 2e-108 Identities = 275/304 (90%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 937 GTTCTAAAGCAATGGATCACAAA-CCGGAGTATTATCTTCTTAGGCACCAAGCAGTTCTC 995 ||| |||||| |||||||| ||| ||||||||||||||||||||| |||| || ||||| Sbjct 1127 GTT-TAAAGCGATGGATCA-AAACCCGGAGTATTATCTTCTTAGGTGCCAAACAATTCTC 1184 Query 996 CAACATAGTATCTGATAACAGTGGTACAGAAGCTTCAGATTCTTGTAGGGAAATTCTCTT 1055 ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 1185 CAACATAGTATCTGATAACAGTGGTGCAGAAGCTTCAGATTCTTGTAGGGATATTCTCTT 1244 Query 1056 AAACATTCCTTCACTGGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGATGATGAG 1115 ||| |||| ||| | |||||||||||||||||||||||||||||||||||||||||| | Sbjct 1245 AAATATTCTTTCGGTTGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGATGATGTG 1304 Query 1116 CTTTCTTAAGGCTGTTGCTCGTATCAAGACGCCACGA-AAGGTTTTACTCACTGGCACAC 1174 ||||||||||| |||| ||||||| |||||||||| | |||||| ||||||||||| ||| Sbjct 1305 CTTTCTTAAGGTTGTTTCTCGTATTAAGACGCCAC-ATAAGGTTCTACTCACTGGCTCAC 1363 Query 1175 TATACCAAAACAACATTAAGGAGGTTTTCAACATTCTT-GATGTTGCTTTCCCTGAGTTT 1233 | ||| |||||||||||||||||||||||||||| ||| ||||||||||||||| | ||| Sbjct 1364 TGTACAAAAACAACATTAAGGAGGTTTTCAACAT-CTTTGATGTTGCTTTCCCTAA-TTT 1421 Query 1234 CTGA 1237 |||| Sbjct 1422 CTGA 1425 > AT3G32330.1 | Symbols: | DNA repair protein-related | chr3:13276082-13277155 FORWARD LENGTH=984 Length=984 Score = 1013 bits (548), Expect = 0.0 Identities = 673/732 (92%), Gaps = 14/732 (2%) Strand=Plus/Plus Query 931 TTAGAAGTTCTAAAGCAATGGATCACAAACC-GGAGTATTATCTTCTTAGGCACCAAGCA 989 ||||| ||| |||||| |||||||| ||||| ||||||| ||||||||||| |||| || Sbjct 259 TTAGAGGTTTTAAAGCGATGGATCA-AAACCTGGAGTATAATCTTCTTAGGGGCCAAACA 317 Query 990 GTTCTCCAACATAGTATCTGATAACAGTGGTACAGAAGCTTCAGATTCTTGTAGGGAAAT 1049 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 318 ATTCTCCAACATAGTATCTGATAACAGTGGTGCAGAAGCTTCAGATTCTTGTAGGGATAT 377 Query 1050 TCTCTTAAACATTCCTTCACTGGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGAT 1109 |||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| Sbjct 378 TCTCTTAAACATTCTTTCGGTTGTTGTTTTCGACAGAGGAACTGATCCGAGGAACGAGAT 437 Query 1110 GATGAGCTTTCTTAAGGCTGTTGCTCGTATCAAGACGCCACGA-AAGGTTTTACTCACTG 1168 ||||||||||||||||| |||| |||||||||||||||||| | |||||| ||||||||| Sbjct 438 GATGAGCTTTCTTAAGGTTGTTTCTCGTATCAAGACGCCAC-ATAAGGTTCTACTCACTG 496 Query 1169 GCACACTATACCAAAACAACATTAAGGAGGTTTTCAACATTCTTGATGTTGCTTTCCCTG 1228 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 497 GCTCACTATACCAAAACAACATTAAGGAGGTTTTCAACATTCTTGATGTTGCTTTCCCCG 556 Query 1229 AGTTTCTGAAGCATAACCAAATTGGTAAAAATATCAGCAAATTC-TTGAATGTTGAAGCT 1287 |||||||||||||||||||||||||||||||| |||| ||| || || |||||||||||| Sbjct 557 AGTTTCTGAAGCATAACCAAATTGGTAAAAATTTCAGAAAACTCCTT-AATGTTGAAGCT 615 Query 1288 GACGTTGATGGACCTTCAACGAATTTGAAGATGCCCCTATTTGATAAATTGGAAGAAGCT 1347 || | | | ||||||||||||||||||||||||| | |||||||||||||| |||||| Sbjct 616 GA--T-G--G-ACCTTCAACGAATTTGAAGATGCCCTTGTTTGATAAATTGGAGGAAGCT 669 Query 1348 TTGCTTAGTCAAGATTCTGATCATGGGGACAAGATTGGTTACTTAACCGAACTAAGGATG 1407 |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 670 TTGCTTAGTCAAGATTCTGATCATGGAGACAAGATTTGTTACTTAACCGAACTAAAGATG 729 Query 1408 TTGACAAACAAGGTTATCTACAATTACAAAGGAGAGTGTCTCCTTGATCTCCCGGGATTG 1467 |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| Sbjct 730 TTGACAAACAAGGTTATCTACAATCACAAAGGAGAGTGTCTCCTTGAAGTTCCGGGATTG 789 Query 1468 CTGGACTTCACGGTGGTCTTAAACCCGACATTAAGCCAAAAGTCAGAATGGGAGACTGAA 1527 |||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |||| Sbjct 790 ATGGACTTCACGGTGGTCTTAAAACCGACATCAAGCCAAAAGTCAGCATGGGAGGTTGAA 849 Query 1528 AGAAACTCCAAAGGGAAAGGTTTCAAAACGTACTCTACCTTGAGCGGAATCACT-CTTCA 1586 ||||| ||||| |||||||||||||||| |||||||||||| |||||||||| | ||||| Sbjct 850 AGAAAGTCCAATGGGAAAGGTTTCAAAAAGTACTCTACCTTAAGCGGAATCA-TGCTTCA 908 Query 1587 CCCACTGCTACGTGCTTTCTCAAACCGGGCAAAAGGTCTTCCTGCCCCTAACGAGGATGA 1646 |||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 909 CCCACTGCTATGTGCTTTCTCAGACCGGGCAAAAGGTCTTCCTGCCCCCAACGAGGATGA 968 Query 1647 GATGGATGAGAT 1658 |||||||||||| Sbjct 969 GATGGATGAGAT 980 Score = 351 bits (190), Expect = 1e-95 Identities = 235/257 (91%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 584 TGAGAGTTCCTAAAGATGGGTTTTTAGGAACTGGCATTTTCCCTCATCCTTTGCTTGAAA 643 ||||||||||||||||||| |||| |||||||||||||||||| |||||||| | | ||| Sbjct 2 TGAGAGTTCCTAAAGATGGCTTTTCAGGAACTGGCATTTTCCCACATCCTTTCCAT-AAA 60 Query 644 GT-ATTATGAAACCACATCACTACGAAATACTCAATTTTCTCTGCAAGAACTTGGTTGTG 702 | ||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||| Sbjct 61 ATGATTATGAAACCACATCACTTCGAGATACTCAATTTTCTCTACAAGAACTTGGTTGTG 120 Query 703 GAAAACTCAAACGGCTGCATCATAGCACAAATTCCTTTATCTGAAAAGACCTTCTTGATG 762 ||||||||||| || ||||||||||| |||| ||| |||||||| ||||||||||||||| Sbjct 121 GAAAACTCAAATGGATGCATCATAGCTCAAACTCCATTATCTGAGAAGACCTTCTTGATG 180 Query 763 ATCAATTTCATATATGGTTACTTAGAAAAGCACCCAAATAGTAAACCTCTATTTGTGCTT 822 |||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 181 ATCAGTTTCATCTATGGTTACTTAGAAAAGCACCCAAATAGTAAATCTCTATTTGTGCTT 240 Query 823 CCTAAGTGGATGCTGAA 839 ||||||||| || |||| Sbjct 241 CCTAAGTGGGTGTTGAA 257 > AT3G31900.1 | Symbols: | ATP-dependent helicase family protein | chr3:12875071-12877422 FORWARD LENGTH=1182 Length=1182 Score = 1005 bits (544), Expect = 0.0 Identities = 706/782 (90%), Gaps = 20/782 (3%) Strand=Plus/Plus Query 1 ATGGATGCAAAGAGGAAATTATCACAAGAGAAAGACCTACATCAAAACGATGATAAAAGA 60 |||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| Sbjct 1 ATGGATGCAAAGAGGAAATTCTCACAAGAGAAAGACCTGTATCAAAACGACGATAAAAGG 60 Query 61 AAAAAGGTTATGACACTAGAAACTCAAGAAGCCAGTGGAAGTTGTGTCGATCAAAATGTG 120 |||||||| || ||||||||| ||||||| | ||||||||||||||||| ||||||| Sbjct 61 AAAAAGGTCGTGGCACTAGAAAATCAAGAAACTGGTGGAAGTTGTGTCGATGGAAATGTG 120 Query 121 GCTCATTGGTTTTCGAAAACGGAGTTCAATGGGTTAATGGACGTACCAATTGTGTATTTG 180 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 121 GCTCATTGGTTTTCGAAAACTAAGTTCAATGGGTTAGTGGACGTACCAATTGTGTATTTG 180 Query 181 GCCTCGGAAGAAAATATAGTTAAGAATGATCATACAATCG-GAAGCTCACTTAAAGATGT 239 |||| |||||||||| ||||||||||||||| ||| || | |||||||||||||| |||| Sbjct 181 GCCTTGGAAGAAAATGTAGTTAAGAATGATCTTAC-ATTGAGAAGCTCACTTAAACATGT 239 Query 240 CAACATTGGCGGTAGCAGCAGAGGCAGTAACAGTGGTAAAGGGCTAGCCAACGATTTGTA 299 || ||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 240 CATCATTGGCAGTATCAGCGGAGGCAGTAACAGTGGTAAAGGGCTAGCCAAGGATTTGTA 299 Query 300 CTTAGATGGAAATGAATTGGTCGGAGTTCATA-TGAGAAGTGATAAAGAAATCAATACGA 358 |||||||| |||||||||||||| |||||| | |||||||||||||||||||||||| || Sbjct 300 CTTAGATGTAAATGAATTGGTCGAAGTTCA-AGTGAGAAGTGATAAAGAAATCAATATGA 358 Query 359 TGAAAGACAAAGGAAAAGCAATATTCGACCTTAACAAAGCTATTTGGCCAAAAGATGAAC 418 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 359 TGAAAGACAAAGGAAAAGCAATATTCGACCTTAACGAAGCTATTTGGCCAAAAGATGAAC 418 Query 419 CAGTTTCAAACACATTTGAGAAAAGTGGAGCATCACTGAAAAATTGTGAGCATTCTTGGA 478 || | ||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| Sbjct 419 CAATATCAAACACATTTGAGAAAAGTAGAGCAACACTGACAAATTGTGAGCATTCTTGGA 478 Query 479 TATGGAAGCAAGGTCTTGGTCATACTTGTTGGATATGTGGTATCATTGACAAGGATCATC 538 |||||||||||||| ||||| | ||||||| ||||||| |||||||||||| Sbjct 479 TATGGAAGCAAGGTTTTGGT-------G----ATATGTGCTATCATTTACAAGGATCATC 527 Query 539 CATTGCCACCCGGATTCGGGTCGAATATCTGCAAAGATATCAAGTTGAGAGTTCCTAAAG 598 | |||||||| |||||| | |||||||||||||||||||||||| ||||||||||||||| Sbjct 528 CGTTGCCACC-GGATTCAGATCGAATATCTGCAAAGATATCAAGATGAGAGTTCCTAAAG 586 Query 599 ATGGGTTTTTAGGAACTGGCATTTTCCCTCATCCTTTGCTTGAAA-GTATTATGAAACCA 657 || | |||| |||||||||||||||||| |||||||||| | ||| | |||||||||||| Sbjct 587 ATAGCTTTTCAGGAACTGGCATTTTCCCACATCCTTTGCATAAAATG-ATTATGAAACCA 645 Query 658 CATCACTACGAAATACTCAATTTTCTCTGCAAGAACTTGGTTGTGGAAAACTCAAACGGC 717 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 646 CATCACTTCGAGATACTCAATTTTCTCTGCAAGAACTTGGTTGTGGAAAACTCAAATGGA 705 Query 718 TGCATCATAGCA-CAAATTCCTTTATCTGAAAAGACCTTCTTGATGATCAATTTCATATA 776 |||||||||| | |||| |||||||||||||||||||||||||||||||| |||||| || Sbjct 706 TGCATCATAG-ATCAAACTCCTTTATCTGAAAAGACCTTCTTGATGATCAGTTTCATCTA 764 Query 777 TG 778 || Sbjct 765 TG 766 Score = 459 bits (248), Expect = 7e-128 Identities = 307/334 (92%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 983 CCAAGCAGTTCTCCAACATAGTATCTGATAACAGTGGTACAGAAGCTTCAGATTCTTGTA 1042 |||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 854 CCAAACAATTCTCCAACATAGTATCTGATAACAGTGGTGCAGAAGCTTCAGACTCTTGTA 913 Query 1043 GGGAAATTCTCTTAAACATTCCTTCACTGGTTGTTTTCGACAGAGGAACTGATCCGAGGA 1102 |||| ||||| |||||||||| ||| | |||||||||| |||||||||||||||||||| Sbjct 914 GGGATATTCTTTTAAACATTCTTTCGGTTGTTGTTTTCGGCAGAGGAACTGATCCGAGGA 973 Query 1103 ACGAGATGATGAGCTTTCTTAAGGCTGTTGCTCGTATCAAGACGCCACGA-AAGGTTTTA 1161 |||||||||||||||||||||||| |||| |||||||||||||||||| | |||||| || Sbjct 974 ACGAGATGATGAGCTTTCTTAAGGTTGTTTCTCGTATCAAGACGCCAC-ATAAGGTTCTA 1032 Query 1162 CTCACTGGCACACTATACCAAAACAACATTAAGGAGGTTTTCAACATTCTTGATGTTGCT 1221 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 CTCACTGGCTCACTATACCAAAACAACATTAAGGAGGTTTTCAACATTCTTGATGTTGCT 1092 Query 1222 TTCCCTGAGTTTCTGAAGCATAACCAAATTGGTAAAAATATCAGCAAATTC-TTGAATGT 1280 ||||||||||||||||||||||||||||||||||||||| |||| |||||| || ||||| Sbjct 1093 TTCCCTGAGTTTCTGAAGCATAACCAAATTGGTAAAAATTTCAGAAAATTCCTT-AATGT 1151 Query 1281 TGAAGCTGACGTTGATGGACCTTCAACGAATTTG 1314 ||||||||| | | || ||||||||||||||| Sbjct 1152 TGAAGCTGA--T-G--GG-CCTTCAACGAATTTG 1179 > AT3G32370.1 | Symbols: | pseudogene, similar to Hypothetical protein, blastp match of 49% identity and 3.6e-40 P-value to GP|20219037|gb|AAM15781.1|AC104428_2|AC104428 Hypothetical protein {Oryza sativa (japonica cultivar-group)} | chr3:13289193-13289828 FORWARD LENGTH=636 Length=636 Score = 891 bits (482), Expect = 0.0 Identities = 568/610 (93%), Gaps = 3/610 (0%) Strand=Plus/Plus Query 1667 AAATCGACGTAACAGATGGCGTT-AAAACAAACTTCTTCATGGGTTTAGTGAAGTTATGC 1725 |||||||||||||||||||| || |||| ||| ||||||||||||||||| ||||||||| Sbjct 1 AAATCGACGTAACAGATGGC-TTAAAAAAAAAGTTCTTCATGGGTTTAGTAAAGTTATGC 59 Query 1726 GATTACACGAATGAGAAGATTCTTGTAGTGAGCCAATATGTCATCCCATTGATATTCCTC 1785 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 60 GGTTACACGAATGAGAAGATTCTTGTAGTGAGCCAATATGTCATCCCATTTATATTCCTC 119 Query 1786 CAAAGACTCGTGGCTAAGATTAAAGGTTGGAAAGATGGCAAAGAAACATTCATGATTAAA 1845 |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||| Sbjct 120 CAAAGACTAGTGGCTAAGATTAAAGGTTGGAAAGATGGCAAACAAACCTTCATGATCAAA 179 Query 1846 GGTGATACAAGTCTTTCTGCTCGAGAAATGTCGATTAATCAATTCAACAACTCGAATGAT 1905 ||||||||||||| |||||| ||||||| || ||||||||||| ||||||||| ||||| Sbjct 180 GGTGATACAAGTCAGTCTGCTTGAGAAATATCAATTAATCAATTTAACAACTCGCATGAT 239 Query 1906 GCGAAAATCTTCTTTGTATCCATTAAAGCGTGTAATGAGCAGATCGGTCTTACGGGTGCA 1965 |||||||||||||||| |||||| ||||||||||||||||| |||| |||| |||||||| Sbjct 240 GCGAAAATCTTCTTTGCATCCATCAAAGCGTGTAATGAGCATATCGCTCTTCCGGGTGCA 299 Query 1966 ACAAGGGTTTTAATGCTCGACATCATCGCCAACCCTTGTATGGCTCGACAAGCCATAGAG 2025 ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || Sbjct 300 ACAAGGGTTTTAATGCTTGACATCATCTCCAACCCTTGTATGGCTCGACAAGCCATACAG 359 Query 2026 CTGGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTATAGGCTGGTGGCTGCTGAT 2085 || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 360 CTCGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTATAGGCTTGTGGCTGCGGAT 419 Query 2086 ACATCAGAAGAAGATGAAGAAATAATCGCAGCTAAAAAGGAGATAATTTCTGGAATATGG 2145 |||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 420 ACATCAAAAGAAGACGAAGACATAATAGCAGCTAAAAAGGAGATAATTTCTGGAATATGG 479 Query 2146 TTT-GATGGGAAGACTTATCCTATAGATGGAAAATTTTGTATTCCGACCATTGATGGAGA 2204 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 480 TTTTGATGGGAAGACTTATCCTATAGATGAAAAATTTTGTATTCCGACCATTGATGGAAA 539 Query 2205 GTACAGCAATGATTACTTCCTTGGAGCTTCATATATGAGGGAAGATATCAAAACCATATA 2264 ||||| ||| |||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 540 CTACAGTAATCATTACTTCCTTGGAGCTTCATATATGAGGGAAGACATCAAAAGCATATA 599 Query 2265 CAAAAGGTTG 2274 ||||||||| Sbjct 600 TAAAAGGTTG 609 > AT3G32310.1 | Symbols: | pseudogene, similar to Hypothetical protein, blastp match of 45% identity and 2.6e-33 P-value to GP|20219037|gb|AAM15781.1|AC104428_2|AC104428 Hypothetical protein {Oryza sativa (japonica cultivar-group)} | chr3:13263527-13264055 FORWARD LENGTH=529 Length=529 Score = 750 bits (406), Expect = 0.0 Identities = 474/508 (93%), Gaps = 0/508 (0%) Strand=Plus/Plus Query 1767 CATCCCATTGATATTCCTCCAAAGACTCGTGGCTAAGATTAAAGGTTGGAAAGATGGCAA 1826 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 CATCCCATTGATATTCCTCCAAAGACTAGTGGCTAAGATTAAAGGTTGGAAAGATGGCAA 60 Query 1827 AGAAACATTCATGATTAAAGGTGATACAAGTCTTTCTGCTCGAGAAATGTCGATTAATCA 1886 | |||| |||||||| |||||||||||||||| |||||| ||||||| || |||||||| Sbjct 61 ATAAACCTTCATGATCAAAGGTGATACAAGTCAGTCTGCTTGAGAAATATCAATTAATCA 120 Query 1887 ATTCAACAACTCGAATGATGCGAAAATCTTCTTTGTATCCATTAAAGCGTGTAATGAGCA 1946 ||| ||||||||| | ||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 121 ATTTAACAACTCGCACGATGCGAAAATCTTCTTTGCATCCATCAAAGCGTGTAATGAGCA 180 Query 1947 GATCGGTCTTACGGGTGCAACAAGGGTTTTAATGCTCGACATCATCGCCAACCCTTGTAT 2006 ||||| |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 181 GATCGCTCTTCCGGGTGCAACAAGGGTTTTAATGCTTGACATCATCTCCAACCCTTGTAT 240 Query 2007 GGCTCGACAAGCCATAGAGCTGGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTA 2066 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 241 GGCTCAACAAGCCATAGAGCTCGCTTATCATCCAGGACAACAAAACAAAGTTTATTCCTA 300 Query 2067 TAGGCTGGTGGCTGCTGATACATCAGAAGAAGATGAAGAAATAATCGCAGCTAAAAAGGA 2126 |||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct 301 TAGGCTTGTGGCTGCGGATACATCAGAAGAAGACGAAGACATAATAGCAGCTAAAAAGGA 360 Query 2127 GATAATTTCTGGAATATGGTTTGATGGGAAGACTTATCCTATAGATGGAAAATTTTGTAT 2186 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 361 GATAATTTCTGGAATATGGTTTGATGGGAAGACTTATCCTATAGATGAAAAATTTTGTAT 420 Query 2187 TCCGACCATTGATGGAGAGTACAGCAATGATTACTTCCTTGGAGCTTCATATATGAGGGA 2246 ||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||||| Sbjct 421 GCCGACCATTGATGGAAACTACGGTAATGATTACTTCCTTGGAGCTTCATATATGAGGGA 480 Query 2247 AGATATCAAAACCATATACAAAAGGTTG 2274 ||| ||||||| |||||| ||||||||| Sbjct 481 AGACATCAAAAGCATATATAAAAGGTTG 508 > AT3G32320.1 | Symbols: | transposable element gene | chr3:13270925-13275593 REVERSE LENGTH=4669 Length=4669 Score = 158 bits (85), Expect = 3e-37 Identities = 91/94 (97%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 437 AGAAAAGTGGAGCATCACTGAAAAATTGTGAGCATTCTTGGATATGGAAGCAAGGTCTTG 496 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 237 AGAAAAGTGGAGCAACACTGGCAAATTGTGAGCATTCTTGGATATGGAAGCAAGGTCTTG 178 Query 497 GTCATACTTGTTGGATATGTGGTATCATTGACAA 530 |||||||||||||||||||||||||||||||||| Sbjct 177 GTCATACTTGTTGGATATGTGGTATCATTGACAA 144 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117218272575 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5