BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344098
Length=2382
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25140.1 | Symbols: HSP98.7, CLPB-M, CLPB4 | casein lytic pr... 1557 0.0
AT3G32375.1 | Symbols: | pseudogene, putative heat shock prote... 782 0.0
AT3G32387.1 | Symbols: | pseudogene, putative clpB heat shock ... 780 0.0
AT3G31906.1 | Symbols: | pseudogene, ATP-dependent CLPB protei... 750 0.0
AT2G25030.1 | Symbols: | pseudogene, HSP100/ClpB, putative, si... 689 0.0
AT3G32383.1 | Symbols: | transposable element gene | chr3:1331... 124 3e-27
> AT2G25140.1 | Symbols: HSP98.7, CLPB-M, CLPB4 | casein lytic
proteinase B4 | chr2:10697703-10702152 REVERSE LENGTH=3223
Length=3223
Score = 1557 bits (843), Expect = 0.0
Identities = 1393/1653 (84%), Gaps = 60/1653 (4%)
Strand=Plus/Plus
Query 765 CCCTGCTCTTGAACCTACGATTTCGATTCTTCGTGGGTTAAGAAAGCGGTATGAGTTACA 824
|||| || ||||| ||| || ||||||||||||||||||||| ||||||| ||||||||
Sbjct 1418 CCCT-CTGTTGAAGATACAATCTCGATTCTTCGTGGGTTAAGAGAGCGGTACGAGTTACA 1476
Query 825 CCATGGTGTTAAGATATCAGATGGTGCCCTTGTTTCAGCAGCGGTTCTTGCAGACCGTTA 884
|||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 1477 CCATGGCGTTACTATATCAGATAGTGCCCTTGTTTCAGCAGCAGTTCTTGCAGACCGCTA 1536
Query 885 CATC-CCTGAACGCTTTCTTCCCGATAAAGCTATTGATCTTGTTGACGAAGCTGCTGCAA 943
|||| || ||||||||||| || || |||||||||||||||||||||||||||| |||||
Sbjct 1537 CATCACC-GAACGCTTTCTGCCAGACAAAGCTATTGATCTTGTTGACGAAGCTGGTGCAA 1595
Query 944 ATCTTAAGATGGAAACCACTTCTAAACCCGCAGAACTCGATGAAATAGACAGATCTTTGA 1003
| || |||||||| | |||||||||||| | ||||| |||| |||||| ||| || |||
Sbjct 1596 AGCTGAAGATGGAGATCACTTCTAAACCAACTGAACTAGATGGAATAGATAGAGCTGTGA 1655
Query 1004 TCACACTGGAGATGGAAAAGCTTTCT-TTGAATATGGAAACCAATAAAGCTTCAAAAGAA 1062
||| | |||||||||||||||||||| || || || || || ||||||| || ||||||
Sbjct 1656 TCAAATTGGAGATGGAAAAGCTTTCTCTTAAAAAT-GATACTGATAAAGCATCTAAAGAA 1714
Query 1063 CGGCTACAGAAGATTGAGAATGATTTGAGCACGCTCAAAGATAAACAGATAA-AATTTAA 1121
|||||||||||||||||||||||| || |||||||||| | ||||||| || || | ||
Sbjct 1715 CGGCTACAGAAGATTGAGAATGATCTGTCCACGCTCAAACAGAAACAGA-AAGAACTCAA 1773
Query 1122 TGAGCAATGGCA-AATAGAAAAGTCTCTCATTG-CTAGAATACGTTCATTTAAAGAAGAG 1179
|| |||||| | || ||||||||| |||| || | | ||||||||| ||||| ||||||
Sbjct 1774 TGTCCAATGGGAGAA-AGAAAAGTCGCTCA-TGACAAAAATACGTTCGTTTAAGGAAGAG 1831
Query 1180 ATCGAT-GAAGTAAACCAGGAAATTGAGTAC-GCAGTATGGGAATCTGATCTAAAACGTG 1237
|| ||| | ||| |||| |||||||| | | || | | | |||| ||||||||| || |
Sbjct 1832 ATTGATCG-AGTTAACCTCGAAATTGAAT-CTGCTGAACGTGAATATGATCTAAACCGAG 1889
Query 1238 TTGATGAACTTAAGTATGGAACCCTTGTATCCCTCCAACGCCAGTTAGAAGAAGCTAAAA 1297
|| ||| || ||||||||||| ||| | |||||||||||||| |||||||||||| | |
Sbjct 1890 CTGCTGAGCTGAAGTATGGAACACTTTTGTCCCTCCAACGCCAATTAGAAGAAGCTGAGA 1949
Query 1298 AGAACCTCAC-AAATT-C--TAG--T------TCACTAGTCCGAGAAGAGGTCACCGATC 1345
|||| ||||| || || | || | |||||| ||||||||| ||| |||||||
Sbjct 1950 AGAATCTCACGAATTTCCGACAGTTTGGACAGTCACTACTCCGAGAAGTGGTTACCGATC 2009
Query 1346 TTAACATAGCGGATATAGTAAGCAAGTCGACCGGTATTCCACTGTCCAATCTTCGGCAGT 1405
|| ||||||| || ||||||||||||| ||| ||||||||||| || ||||||| ||| |
Sbjct 2010 TTGACATAGCAGAAATAGTAAGCAAGTGGACTGGTATTCCACTATCTAATCTTCAGCAAT 2069
Query 1406 CAGAGAAAGAAAAGCTT-GTCATATTGG-AGCAAATGCTCCACAAGAGAGTGATTGGTCA 1463
|||||| ||| ||| || || || |||| || || |||||||| | ||||| ||||||||
Sbjct 2070 CAGAGAGAGAGAAG-TTAGTGATGTTGGAAG-AAGTGCTCCACCATAGAGTTATTGGTCA 2127
Query 1464 AGACTTGGCTGTAGAATCAGTTGCAGATGCTATCCGTTGTTCAAAAGCTGGTCTTTCAGA 1523
|||| |||||||| ||||||| |||||||||||||| |||||| ||||||||||| ||
Sbjct 2128 AGACATGGCTGTAAAATCAGTAGCAGATGCTATCCGACGTTCAAGGGCTGGTCTTTCTGA 2187
Query 1524 TCCTAACCGCCCTATAGCCAGTTTTATGTTCATGGGTCCAACAGGTGTTGGGAAAACCGA 1583
|||||||||||| ||||| ||||| |||||||||||||||||||||||||| || |||||
Sbjct 2188 TCCTAACCGCCCAATAGCTAGTTTCATGTTCATGGGTCCAACAGGTGTTGGTAAGACCGA 2247
Query 1584 GCTTGCAAAAGCTCTAGCTGGATACCTTTTCAACAATGAAAACGCGATAGTGAGGATCGA 1643
|||||| || |||||||| ||||||||||| |||| |||||| || ||||||||| ||||
Sbjct 2248 GCTTGCCAAGGCTCTAGCGGGATACCTTTTTAACACTGAAAATGCAATAGTGAGGGTCGA 2307
Query 1644 TATGAGTGAGTACATGGAAAAACAGTCAGTCTCACGGCTCGTTGGTGCAGCACCTGGCTA 1703
|||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||
Sbjct 2308 TATGAGTGAGTACATGGAAAAACACTCAGTCTCACGGCTTGTTGGTGCACCACCTGGCTA 2367
Query 1704 TGTCGGTTACGAAGAAGGAGGGCAATTAACTGAAGCTGTTCGGAGGAGACCTTATTCAGT 1763
||||||||| |||||||| ||||| |||||||||| |||||| ||||||||||| || ||
Sbjct 2368 TGTCGGTTATGAAGAAGGTGGGCAGTTAACTGAAGTTGTTCGCAGGAGACCTTACTCGGT 2427
Query 1764 GGTTCTGTTTGATGAGATAGAGAAAGCTCACCATGATGTCTTTAATATCTTGCTACAACT 1823
|||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct 2428 GGTTCTGTTTGATGAGATCGAGAAAGCCCACCCTGATGTCTTTAATATCTTGCTACAACT 2487
Query 1824 ACTAGATGATGGAAGAATAACAGATTCTCATGGGAGGACAGTAAGTTTCACAAACTGCT- 1882
||||| |||||||||||||| |||||||| || ||||| |||||||||| |||||| |
Sbjct 2488 GCTAGACGATGGAAGAATAACTGATTCTCAAGGAAGGACCGTAAGTTTCAAAAACTG-TG 2546
Query 1883 TTGTAATAATGACGTCTAATATAGGATCTCAACACATACTTGAAACGATCCGCAACAATG 1942
||||||| |||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 2547 TTGTAATTATGACGTCGAATATAGGATCTCACCACATACTTGAGACCCTCCGCAACAATG 2606
Query 1943 AAGATAGTAAAGAAGAAGTTTATGAGATGATGAAGCAACAAGTTGTGGAGTTAGCAAGA- 2001
|||| || ||||||| |||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2607 AAGACAGCAAAGAAGCAGTTTATGAGATAATGAAGCGGCAAGTTGTGGAGTTAGCAAGAC 2666
Query 2002 AAAACTTTCAAGCCAGAGTTCATGAACAGAATTGATGAATACATAGTTTTCCAGCCTTTG 2061
|||| ||||| ||| |||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 2667 AAAA-TTTCAGGCCTGAGTTCATGAACAGAATTGACGAGTACATAGTTTTCCAGCCGCTG 2725
Query 2062 GATTC-AA-GAGAACTATCGAAAATCGTGGAGTTGCAGATGATACGAGTGAAGAATAGGT 2119
||||| || || || | || |||||||| ||||| ||||||| ||| ||||||||||| |
Sbjct 2726 GATTCTAACGA-AA-TCTCCAAAATCGTAGAGTTACAGATGAGACGGGTGAAGAATAGCT 2783
Query 2120 TGGAACATAAGAAGAT-AACACTTGAGTACACAAAAGAAGCAGTGGATCTACTTGCTCAT 2178
||||||| ||||| || || |||| |||| || ||||| ||||||||||| ||||||||
Sbjct 2784 TGGAACAGAAGAAAATCAA-ACTTCAGTATACCAAAGAGGCAGTGGATCTCCTTGCTCA- 2841
Query 2179 CAGCTTGGGTTTGATCCC-AACAATGGGGCAAGACCAGTGAAGAGAGTGATTGAGA-AGA 2236
|||||| ||||| ||| ||| | |||||||| || |||||| |||||||| | | |||
Sbjct 2842 --GCTTGGCTTTGA-CCCTAACTACGGGGCAAGGCCGGTGAAGCGAGTGATTCA-ACAGA 2897
Query 2237 TTGTGAAGAAGGAGATCGCCT-TCAA-AGTTTTGAAAGGAGATTTTGCAGAGGGAGACAC 2294
| ||| |||| |||||||| | || | |||||||||||||||||||||| | ||| ||
Sbjct 2898 TGGTGGAGAATGAGATCGC-TGTCGGGA-TTTTGAAAGGAGATTTTGCAGAAGAAGATAC 2955
Query 2295 CATTCTTCTTGAAGTTGACCA---GACAAGT-A-A-CAAACTGGTCATCAAGAAGCTCGA 2348
| ||||| | || |||||||| | | ||| | | |||| |||| ||||||||||| ||
Sbjct 2956 CGTTCTTGTCGATGTTGACCACTTGGCTAGTGACAACAAATTGGTTATCAAGAAGCTTGA 3015
Query 2349 GAATAATGCTCCCAT-TGAAGAAATGACAGCTT 2380
|| ||||||| | | |||||||||| | ||||
Sbjct 3016 GAGTAATGCTTC-AGCTGAAGAAATGGCCGCTT 3047
> AT3G32375.1 | Symbols: | pseudogene, putative heat shock protein,
similar to heat shock protein GI:3360502 from (Plectonema
boryanum); blastp match of 80% identity and 2.6e-110 P-value
to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700 ClpB {Phaseolus
lunatus} | chr3:13304501-13306236 FORWARD LENGTH=1736
Length=1736
Score = 782 bits (423), Expect = 0.0
Identities = 596/678 (88%), Gaps = 17/678 (3%)
Strand=Plus/Plus
Query 1244 AACTTAAGTATGGAACCCTTGTATCCCTCCAACGCCAGTTAGAAGAAGCTAAAAAGAACC 1303
|||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 25 AACTTAAGTATGGAACCCTTGTATCCCTCCAAGGCTAGTTAGAAGAAGCTAGAAAGAACC 84
Query 1304 TCACAAA--TT------C-T--A-GTTCACTAGTCCGAGAAGAGGTCACCGATCTTAACA 1351
||||||| || | | | ||| |||||||||||| | || ||| | |||||||
Sbjct 85 TCACAAATTTTAGAAAGCATGAACATTCCCTAGTCCGAGAATAAGTAACCAAGCTTAACA 144
Query 1352 TAGCGGATATAGTAAGCAAGTCGACCGGTATTCCACTGTCCAATCTTCGGCAGTCAGAGA 1411
||| ||||||||||||||||| |||| ||||||||| |||||||||| ||| |||||||
Sbjct 145 TAGAGGATATAGTAAGCAAGT-GACCTATATTCCACTATCCAATCTTCAGCAATCAGAGA 203
Query 1412 AAGAAAAGCTT-GTCATATTGGAGCAAATGCTCCACAAGAGAGTGATTGGTCAAGACTTG 1470
||||||| || ||||| ||||| ||||| |||||| ||||||| |||| |||||||||
Sbjct 204 GAGAAAAG-TTAGTCATGTTGGAACAAATCCTCCACGAGAGAGTAATTGCTCAAGACTTA 262
Query 1471 GCTGTAGAATCAGTTGCAGATGCTATCCGTTGTTCAAAAGCTGGTCTTTCAGATCCTAAC 1530
| |||||| |||||||| |||||||||||||||||||| |||||| ||||||||||||||
Sbjct 263 GATGTAGAGTCAGTTGCCGATGCTATCCGTTGTTCAAAGGCTGGTATTTCAGATCCTAAC 322
Query 1531 CGCCCTATAGCCAGTTTTATGTTCATGGGTCCAACAGGTGTTGGGAAAACCGAGCTTGCA 1590
||||||||||| ||||||||||||||||| |||||| ||||||| || |||||||||||
Sbjct 323 CGCCCTATAGCTAGTTTTATGTTCATGGGACCAACAAGTGTTGGTAAGACCGAGCTTGCC 382
Query 1591 AAAGCTCTAGCTGGATACCTTTTCAACAATGAAAACGCGATAGTGAGGATCGATATGAGT 1650
|| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct 383 AAGGCACTAGCTGGATACCTTTTCAACAATGAAAACGCAATAGTGAGGATAGATATGATT 442
Query 1651 GAGTACATGG-AAAAACAGTCAGTCTCACGGCTCGTTGGTGCAGCACCTGGCTATGTCGG 1709
||||||||| |||||| || |||||||| ||||||||||||| || ||||||||| ||
Sbjct 443 TAGTACATGGAAAAAAC-GTTAGTCTCACAGCTCGTTGGTGCATCAGTTGGCTATGTTGG 501
Query 1710 TTACGAAGAAGGAGGGCAATTAACTGAAGCTGTTCGGAGGAGACCTTATTCAGTGGTTCT 1769
||||||||| || ||| ||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 502 TTACGAAGACGGTGGGAAATCAACTGAAGTTGTTCGAAGGAGACCTTATTCAGTGGTTCA 561
Query 1770 GTTTGATGAGATAGAGAAAGCTCACCATGATGTCTTTAATATCTTGCTACAACTACTAGA 1829
|||||||||||| |||||| | |||| | ||||||| | |||||||||||||||||||||
Sbjct 562 GTTTGATGAGATCGAGAAACCGCACCCTAATGTCTTCAGTATCTTGCTACAACTACTAGA 621
Query 1830 TGATGGAAGAATAACAGATTCTCATGGGAGGACAGTAAGTTTCACAAACTGCTTTGTAAT 1889
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 622 CGATGGAAGAATAACTGATTCTCATGGTAGGACAGTAAGTTTCACAAACTGCTTTGTAAT 681
Query 1890 AATGACGTCTAATATAGG 1907
||| ||||||||||||||
Sbjct 682 AATTACGTCTAATATAGG 699
Score = 235 bits (127), Expect = 1e-60
Identities = 179/203 (88%), Gaps = 7/203 (3%)
Strand=Plus/Plus
Query 1900 AATATAGGATCTCAACACATAC---TTGAAACGATCCGCAACAATGAAGATAGT-AAAGA 1955
|||||| |||||| ||| |||| |||| || || |||||||||||||||| | |||||
Sbjct 926 AATATAAGATCTCTACATATACTTATTGAGACTATTCGCAACAATGAAGATA-TCAAAGA 984
Query 1956 AGAAGTTTATGAGATGATGAAGCAACAAGTTGTGGAGTTAGCAAGAAAAACTTTCAAGCC 2015
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 985 AGCAGTTTATGAAATGATGAAGCAACAAGTTGTGGAGTTAGCAAGAAAAACTTTTAAGCC 1044
Query 2016 AGAGTTCATGAACAGAATTGATGAATACATAGTTTTCCAGCCTTTGGATTCAAGAG-AAC 2074
| |||||||||| |||||||||||||||||||||| ||||||||| ||||||| | ||
Sbjct 1045 AAAGTTCATGAATAGAATTGATGAATACATAGTTTCCCAGCCTTTAAATTCAAGCGTAA- 1103
Query 2075 TATCGAAAATCGTGGAGTTGCAG 2097
|||| |||||||||||||| |||
Sbjct 1104 TATCCAAAATCGTGGAGTTACAG 1126
> AT3G32387.1 | Symbols: | pseudogene, putative clpB heat shock
protein, blastp match of 63% identity and 5.8e-148 P-value
to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700 ClpB {Phaseolus
lunatus} | chr3:13323220-13325196 FORWARD LENGTH=1977
Length=1977
Score = 780 bits (422), Expect = 0.0
Identities = 747/900 (83%), Gaps = 38/900 (4%)
Strand=Plus/Plus
Query 1219 GAATCTGATCTAAAACGTGTTGATGAACTTAAGTATGGAACCCTTGTATCCCTCCAACGC 1278
|||| || ||||| | || || ||| || ||||||||||| ||| | || |||||||||
Sbjct 538 GAATGTGGTCTAAGAGGTACTGCTGATCTAAAGTATGGAACACTTATGTCTCTCCAACGC 597
Query 1279 CAGTTAGAAGAAGCT--A-AA-AA--GAACC--TCAC-AA-ATTCT-A-G-TTCACTAGT 1325
||||||||| ||| | | || || ||| || | || ||||| | | ||| || |
Sbjct 598 CAGTTAGAACAAG-TGGAGAAGAATCTCACCAGTCCCGAAGATTCTGATGACTCAATACT 656
Query 1326 CCGAGAAGAGGTCACCGATCTTAACATAGCGGATATAGTAAGCAAGTCGACCGGTATTCC 1385
|| ||||||||| | ||| | ||||||| || ||||||||||||| ||| ||||||||
Sbjct 657 CCAAGAAGAGGTAAGTGATGTCCACATAGCAGAGATAGTAAGCAAGTGGACTGGTATTCC 716
Query 1386 ACTGTCCAATCTTCGGCAGTCAGAGAAAGAAAAGCTTGTCATATTGG-AGCAAATGCTCC 1444
|| || ||||||| ||| || || || |||||| ||||| |||| || | |||| |
Sbjct 717 TCTATCAAATCTTCAGCAATC--AG--AG-AAAGCTAGTCATGTTGGAAG-ACGTGCTAC 770
Query 1445 ACAAGAGAG-TGATTGGTCAAGACTTGGCTGTAGAATCAGTTGCAGATGCTATCCGTTGT 1503
|||||| || || |||||||||| ||||||||||||| | ||| ||| ||| |||||
Sbjct 771 ACAAGATAGTTG-TTGGTCAAGAAAAGGCTGTAGAATCAATAGCAAATGTTATACGTTGC 829
Query 1504 TCAAAAGCTGGTCTTTCAGATCCTAACCGCCCTATAGCCAGTTTTATGTTCATGGGTCCA 1563
||||| |||||||||||||||||| | || ||||| |||||| ||||||||||||||
Sbjct 830 TCAAAGGCTGGTCTTTCAGATCCT-A---TCCAATAGCTAGTTTTCTGTTCATGGGTCCA 885
Query 1564 ACAGGTGTTGGGAAAACCGAGCTTGCAAAAGCTCTAGCTGGATACCTTTTCAACAATGAA 1623
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||| ||||
Sbjct 886 ACAGGTGTTGGGAAAACCGAGCTTGCCAACGCTCTTGCTGGATACCTTTTCAACACTGAA 945
Query 1624 AACGCGATAGTGAGGATCGATATGAGTGAGTACATGGA-AAAACAGTCAGTCTCACGGCT 1682
|| || |||||||||||||||||||||||||||||||| |||| | || |||||||| ||
Sbjct 946 AATGCTATAGTGAGGATCGATATGAGTGAGTACATGGAGAAAA-ACTCTGTCTCACGACT 1004
Query 1683 CGTTGGTGCAGCACCTGGCTATGTCGGTTACGAAGAAGGAGGGCAATTAACTGAAGCTGT 1742
|||||||||| | ||||||| || ||||| ||||||||| ||||| ||||| ||||||||
Sbjct 1005 CGTTGGTGCACCTCCTGGCTGTGCCGGTTTCGAAGAAGGTGGGCAGTTAACCGAAGCTGT 1064
Query 1743 TCGGAGGAGACCTTATTCAGTGGTTCTGTTTGATGAGATAGAGAAAGCTCACCATGATGT 1802
||| || |||||||| ||||||||||| || || ||||| |||||||| |||| ||||||
Sbjct 1065 TCGAAGAAGACCTTACTCAGTGGTTCTATTCGACGAGATTGAGAAAGCGCACCCTGATGT 1124
Query 1803 CTTTAATATCTTG-CTACA-ACTACTAGATGATGGAAGAATAACAGATTCTCATGGGAGG 1860
||| ||||| || ||||| | |||||| |||||||||| |||| ||||| || || |||
Sbjct 1125 CTTCAATATTTTTTCTACAGA-TACTAGGTGATGGAAGAGTAACTGATTCGCAAGGAAGG 1183
Query 1861 ACAGTAAGTTTCACAAACTGCTTTGTAATAATGACGTCTAATATAGGATCTCAACAC-AT 1919
| ||||||||| | ||||||||||||| |||||||||||||||||||||| |||| | ||
Sbjct 1184 ATAGTAAGTTTTAGAAACTGCTTTGTAGTAATGACGTCTAATATAGGATCGCAAC-CTAT 1242
Query 1920 ACTTGAAACGATCCGCAACAATGAAGATAGTAAAGAAGAAGTTTATGAGATGATGAA-GC 1978
|||||| || ||||||||||| |||| || ||||||| |||||||| ||||||||| |
Sbjct 1243 ACTTGAGACTTTCCGCAACAATAAAGAAAGCAAAGAAGCAGTTTATGGGATGATGAATG- 1301
Query 1979 AACAAGTTGTGGAGTTAGCAAGAAAAACTTTCAAGCCAGAGTTCATGAACAGAATTGATG 2038
|||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 1302 AACAAGCTGTGGAGTTAGCAAGACAAACTTTTAAGCCAGAGTTCATGAACAGAATTGACG 1361
Query 2039 AATACATAGTTTTCCAGCCT-TTGGATTCAAGAGAACTATCGAAAATCGTGGAGTTGCAG 2097
| |||||||||||||||| | ||||||| | |||| |||| |||||||||||||| |||
Sbjct 1362 AGTACATAGTTTTCCAGC-TGTTGGATTTATCAGAATTATCCAAAATCGTGGAGTTTCAG 1420
> AT3G31906.1 | Symbols: | pseudogene, ATP-dependent CLPB protein,
blastp match of 74% identity and 9.9e-102 P-value to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700
ClpB {Phaseolus lunatus}
| chr3:12896942-12898508 FORWARD LENGTH=1567
Length=1567
Score = 750 bits (406), Expect = 0.0
Identities = 592/680 (87%), Gaps = 19/680 (3%)
Strand=Plus/Plus
Query 1244 AACTTAAGTATGGAACCCTTGTATCCCTCCAACGCCAGTTAGAAGAAGCTAAAAAGAACC 1303
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 15 AACTTAAGTATGGAACCCTTGTATCCCTCCAAGGCCAGTTAGAAGAAGCTAGAAAGAACC 74
Query 1304 TCACAAATTCT-------A-G----TTCACTAGTCCGAGAAGAGGTCACCGATCTTAACA 1351
||||||||||| | | ||| |||||||||||| | || ||| | |||||||
Sbjct 75 TCACAAATTCTAGAAAGCATGAACATTCCCTAGTCCGAGAATAAGTAACCAAGCTTAACA 134
Query 1352 TAGCGGATATAGTAAGCAAGTCGACCGGTATTCCACTGTCCAATCTTCGGCAGTCAGAGA 1411
||||||||||||||||||||| |||| ||||||||||||||||||| || |||||||
Sbjct 135 TAGCGGATATAGTAAGCAAGT-GACCTATATTCCACTGTCCAATCTTTACCAATCAGAGA 193
Query 1412 AAGAAAAGCTT-GTCATATTGGAGCAAATGCTCCACAAGAGAGTGATTGGTCAAGACTTG 1470
||||||| || ||||| ||||| ||| |||||||| ||||| | |||| | ||||||||
Sbjct 194 GAGAAAAG-TTAGTCATGTTGGAACAACTGCTCCACGAGAGACTTATTGCTTAAGACTTG 252
Query 1471 GCTGTAGAATCAGTTGCAGATGCTATCCGTTGTTCAAAAGCTGGTCTTTCAGATCCTAAC 1530
| |||||| |||||||| ||| |||||||||||||||| |||||| ||||||||||||||
Sbjct 253 GATGTAGAGTCAGTTGCCGATTCTATCCGTTGTTCAAAGGCTGGTATTTCAGATCCTAAC 312
Query 1531 CGCCCTATAGCCAGTTTTATGTTCATGGGTCCAACAGGTGTTGGGAAAACCGAGCTTGCA 1590
| |||| |||| ||||||||||||||||| |||||| ||||||| || | |||||||||
Sbjct 313 CACCCTGTAGCTAGTTTTATGTTCATGGGACCAACAAGTGTTGGTAAGATCGAGCTTGCC 372
Query 1591 AAAGCTCTAGCTGGATACCTTTTCAACAATGAAAACGCGATAGTGAGGATCGATATGAGT 1650
|| | ||||||||||| ||||||||||||||||||| ||||||||||| |||||||||
Sbjct 373 AAGGAAATAGCTGGATACATTTTCAACAATGAAAACGCAATAGTGAGGATAGATATGAGT 432
Query 1651 GAGTACATGG-AAAAACAGTCAGTCTCACGGCTCGTTGGTGCAGCACCTGGCTATGTCGG 1709
||||||||| |||||| ||||||||||| ||||||||||||| ||| ||||||||| ||
Sbjct 433 TAGTACATGGAAAAAAC-GTCAGTCTCACAGCTCGTTGGTGCATCACTTGGCTATGTTGG 491
Query 1710 TTACGAAGAAGGAGGGCAATTAACTGAAGCTGTTCGGAGGAGACCTTATTCAGTGGTTCT 1769
||||||||| || ||| ||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 492 TTACGAAGACGGTGGGAAATCAACTGAAGTTGTTCGCAGGAGACCTTATTCAGTGGTTCA 551
Query 1770 GTTTGATGAGATAGAGAAAGCTCACCATGATGTCTTTAATATCTTGCTACAACTACTAGA 1829
|||||||||||| |||||| | |||||||||| || | ||||||||||||| || ||||
Sbjct 552 GTTTGATGAGATCGAGAAACCGCACCATGATGGATTCAGTATCTTGCTACAAATAATAGA 611
Query 1830 TGATGGAAGAATAACAGATTCTCATGGGAGGACAGTAAGTTTCACAAACTGCTTTGTAAT 1889
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 612 CGATGGAAGAATAACTGATTCTCATGGTAGGACAGTAAGTTTCACAAACTGCTTTGTAAT 671
Query 1890 AAT-GACGTCTAATATAGGA 1908
||| | ||||||||||||||
Sbjct 672 AATTG-CGTCTAATATAGGA 690
Score = 189 bits (102), Expect = 1e-46
Identities = 141/159 (89%), Gaps = 5/159 (3%)
Strand=Plus/Plus
Query 1900 AATATAGGATCTCAACACATAC---TTGAAACGATCCGCAACAATGAAGATAGT-AAAGA 1955
|||||| |||||| ||| |||| |||| || || |||||||||||||||| | |||||
Sbjct 916 AATATAAGATCTCTACATATACTTATTGAGACTATTCGCAACAATGAAGATA-TCAAAGA 974
Query 1956 AGAAGTTTATGAGATGATGAAGCAACAAGTTGTGGAGTTAGCAAGAAAAACTTTCAAGCC 2015
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 975 AGTAGTTTATGAAATGATGAAGCAACAAGTTGTGGAGTTAGCAAGAAAAACTTTTAGGCC 1034
Query 2016 AGAGTTCATGAACAGAATTGATGAATACATAGTTTTCCA 2054
| |||||||||| |||||||||||||||||||||| |||
Sbjct 1035 AAAGTTCATGAATAGAATTGATGAATACATAGTTTCCCA 1073
> AT2G25030.1 | Symbols: | pseudogene, HSP100/ClpB, putative,
similar to HSP100/ClpB GI:9651530 (Phaseolus lunatus); blastp
match of 77% identity and 3.4e-113 P-value to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700
ClpB {Phaseolus lunatus} |
chr2:10648663-10650450 FORWARD LENGTH=1788
Length=1788
Score = 689 bits (373), Expect = 0.0
Identities = 503/566 (89%), Gaps = 7/566 (1%)
Strand=Plus/Plus
Query 1345 CTTAACATAGCGGATATAGTAAGCAAGTCGACCGGTATTCCACTGTCCAATCTTCGGCAG 1404
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 6 CTTAACATAGCGGATATAGTAAGCAAGT-GACCTATATTCCACTGTCCAATCTTCAGCAA 64
Query 1405 TCAGAGAAAGAAAAGCTTGTCATATTGGAGCAAATGCTCCACAAGAGAGTGATTGGTCAA 1464
||||||| ||||||||| ||||| ||||| ||||| |||||| ||||| | |||| ||||
Sbjct 65 TCAGAGAGAGAAAAGCTAGTCATGTTGGAACAAATACTCCACGAGAGAATAATTGCTCAA 124
Query 1465 GACTTGGCTGTAGAATCAGTTGCAGATGCTATCCGTTGTTCAAAAGCTGGTCTTTCAGAT 1524
||||||| |||||| |||||||| |||||||||||||||||||| |||||| ||||||||
Sbjct 125 GACTTGGATGTAGAGTCAGTTGCCGATGCTATCCGTTGTTCAAAGGCTGGTATTTCAGAT 184
Query 1525 CCTAACCGCCCTATAGCCAGTTTTATGTTCATGGGTCCAA-CAGGTGTTGGGAAAACCGA 1583
|||||||||| |||||| ||||||||||||||||| ||| || ||||||| || |||||
Sbjct 185 CCTAACCGCCTTATAGCTAGTTTTATGTTCATGGG-ACAACCAAGTGTTGGTAAGACCGA 243
Query 1584 GCTTGCAAAAGCTCTAGCTGGATACCTTTTCAACAATGAAAACGCGATAGTGAGGATCGA 1643
|||||| || || |||||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 244 GCTTGCCAAGGCACTAGCTGGATACCTTTTCAACAATGAAAACACAATAGTGAGGATAGA 303
Query 1644 TATGAGTGAGTACATGGAAAAA-CAGTCAGTCTCACGGCTCGTTGGTGCAGCACCTGGCT 1702
||||||| || ||||||||||| | || |||||||| ||||||||||||| |||||||||
Sbjct 304 TATGAGTTAGCACATGGAAAAAAC-GTTAGTCTCACAGCTCGTTGGTGCATCACCTGGCT 362
Query 1703 ATGTCGGTTACGAAGAAGGAGGGCAATTAACTGAAGCTGTTCGGAGGAGACCTTATTCAG 1762
|||| ||||||| ||| || ||| |||||||||||| |||||| ||||||||||||||||
Sbjct 363 ATGTTGGTTACGGAGACGGTGGGAAATTAACTGAAGTTGTTCGAAGGAGACCTTATTCAG 422
Query 1763 TGGTTCTGTTTGATGAGATAGAGAAAGCTCACCATGATGTCTTTAATATCTTGCTACAAC 1822
|||||| |||||||||||| |||||| | |||| ||||||||| | ||||||||| ||||
Sbjct 423 TGGTTCAGTTTGATGAGATCGAGAAACCGCACCTTGATGTCTTCAGTATCTTGCTTCAAC 482
Query 1823 TACTAGATGATGGAAGAATAAC-AGATTCTCATGGGAGGACAGTAAGTTTCACAAACTGC 1881
||||||| |||||||||||||| | |||||||||| |||||| ||||||||||||||||
Sbjct 483 TACTAGACGATGGAAGAATAACTA-ATTCTCATGGTAGGACACTAAGTTTCACAAACTGT 541
Query 1882 TTTGTAATAATGACGTCTAATATAGG 1907
||||||||||| || |||||||||||
Sbjct 542 TTTGTAATAATTACATCTAATATAGG 567
Score = 291 bits (157), Expect = 3e-77
Identities = 235/271 (87%), Gaps = 11/271 (4%)
Strand=Plus/Plus
Query 2093 TGCAGATGATACGAGTGAAGAATAGGTTGGAACATAAGAAGATAACA-CTTGAGTACACA 2151
||||||||| || ||||||||| ||||||||||| || || |||| | ||||||||||||
Sbjct 1260 TGCAGATGAGACAAGTGAAGAAGAGGTTGGAACAGAATAAAATAA-ATCTTGAGTACACA 1318
Query 2152 AAAGAAGCAGTGGATCTACTTGCTCATCAGCTTGGGTTTGATCCCAACAATGGGGCAAGA 2211
|||||||| |||||||| |||| | ||||||||| ||||| ||||||||||||||||||
Sbjct 1319 AAAGAAGCTGTGGATCTCCTTG--C-TCAGCTTGGCTTTGACCCCAACAATGGGGCAAGA 1375
Query 2212 CCAGTGAAG-AGAGTGATTGAGAAGATTGTGAAGAAGGAGATCGCCTTCAAAGTTTTGAA 2270
|| |||||| | | ||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1376 CCGGTGAAGCAAA-TGATTGAGAAGCTTGTGAAGAAGGAGATCACCCTCAAAGTTTTGAA 1434
Query 2271 AGGAGATTTTGCAGAGGGA-GACACCATTCTTCTTGAAGTTGACCAGAC-AAGTAACAAA 2328
||||||||||||||||| | | ||| |||||| | || | ||||||| | || ||||||
Sbjct 1435 AGGAGATTTTGCAGAGG-ATGGCACTATTCTTATCGATGCTGACCAGCCTAAC-AACAAA 1492
Query 2329 CTGGTCATCAAGAAGCTCGAGAATAATGCTC 2359
||||||||||||||| | |||||||||||||
Sbjct 1493 CTGGTCATCAAGAAGATGGAGAATAATGCTC 1523
Score = 244 bits (132), Expect = 2e-63
Identities = 178/200 (89%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 1900 AATATAGGATCTCAACACATACTTGAAACGATCCGCAACAATGAAGATAGT-AAAGAAGA 1958
||||||||||||| ||| |||||||| || || |||||||||||||||| | |||||||
Sbjct 798 AATATAGGATCTCTACATATACTTGAGACTATTCGCAACAATGAAGATA-TCAAAGAAGC 856
Query 1959 AGTTTATGAGATGATGAAGCAACAAGTTGTGGAGTTAGCAAGAAAAACTTTCAAGCCAGA 2018
| ||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 857 ATTTTATGAAATGATGAAGCAACAAGTTGTGGAGTTAGCAAGAAAAACTTTTAGGCCAAA 916
Query 2019 GTTCATGAACAGAATTGATGAATACATAGTTT-TCCAGCCTTTGGATTCAAGAGAACTAT 2077
||||||||| |||||||||||||||||||||| || ||||||| ||||||| ||| |||
Sbjct 917 GTTCATGAATAGAATTGATGAATACATAGTTTCTC-AGCCTTTAAATTCAAGCGAAATAT 975
Query 2078 CGAAAATCGTGGAGTTGCAG 2097
| |||||||||||||| |||
Sbjct 976 CCAAAATCGTGGAGTTACAG 995
> AT3G32383.1 | Symbols: | transposable element gene | chr3:13314146-13318012
FORWARD LENGTH=3867
Length=3867
Score = 124 bits (67), Expect = 3e-27
Identities = 107/127 (84%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 518 TGCTTGCTGGTACAAAATATCGCGGAGAATTTGAGGAAAAGTTGAAAGTAGTACTGAAGG 577
|||||| ||||||| ||||| | ||||| |||||||||| |||||||| | | | ||||
Sbjct 3402 TGCTTGATGGTACAGAATATTGAGGAGATTTTGAGGAAAGGTTGAAAGCAATGTTAAAGG 3461
Query 578 AAGTAACTGCTTCCAATGGGAAGACAATCTTGTTCATTGATGAAATCCACACTCTTGTTG 637
|| ||| | | |||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct 3462 AAATAAATTCATCCAATGGCTAGATAATCTTGTTCATTGATGAAATCCACACTATTGTTG 3521
Query 638 GTGCAGG 644
| |||||
Sbjct 3522 GGGCAGG 3528
Score = 84.2 bits (45), Expect = 5e-15
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 82 TCTACCTGTGCTCACTTCAGCTCACGTTCCTCTTCCAATTCCTTTCTTTTCCGACCAAAT 141
||| ||||||||||||||||||||||||||||| ||| ||| ||| ||||||| ||| |
Sbjct 502 TCTGCCTGTGCTCACTTCAGCTCACGTTCCTCTCCCAGTTCTTTTATTTTCCGGCCATAC 561
Query 142 TCCTTCATC 150
|||||||||
Sbjct 562 TCCTTCATC 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118272484020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5