BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344110
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25130.1 | Symbols: | ARM repeat superfamily protein | chr2... 1736 0.0
AT4G31890.1 | Symbols: | ARM repeat superfamily protein | chr4... 534 7e-151
> AT2G25130.1 | Symbols: | ARM repeat superfamily protein | chr2:10695182-10697000
REVERSE LENGTH=1509
Length=1509
Score = 1736 bits (940), Expect = 0.0
Identities = 1274/1428 (89%), Gaps = 51/1428 (4%)
Strand=Plus/Plus
Query 1 ATGGCAAAGTGTCACCGTAACAATGTAGATTCTCTTATCCTTCACCGTATACCCTCCGCT 60
||||| ||||||||||| |||||||| ||| |||| || || || ||||| |||||||||
Sbjct 42 ATGGCGAAGTGTCACCGGAACAATGTTGATCCTCTCATTCTCCATCGTATTCCCTCCGCT 101
Query 61 TCTTCTTCTTCTTCCTCCGCCTCCGGAAACACTTTCTCCGGATCATCATTGCGCAGGATC 120
|||||||| |||| | ||||||||||| ||||||||||| |||||||||||||||
Sbjct 102 TCTTCTTCCTCTT--T----ATCCGGAAACACCTTCTCCGGATCGTCATTGCGCAGGATC 155
Query 121 ATCTTCGACGCAATTAGCTGCGGCGGTAGCTCTCGTTACCAACGTGAACTCCGAGAAGAA 180
||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 156 ATCTTCGACGCCATTAGTTGCGGCGGTAGCTCTCGTTACCGACGTGAACTCCGAGAAGAA 215
Query 181 GACGACGAA-GATGCTTCCAAATCGATAA-CAATCGGAGAGGATTTAGCAAGGAAATCAG 238
||||||||| | || ||| ||||||| || | ||||||||||||| | |||||| | |
Sbjct 216 GACGACGAAGGTTG-TTCGAAATCGACAATC-ATCGGAGAGGATTCAATGAGGAAACCGG 273
Query 239 AGAAGCTTTGTGATCTGTTAAACTTAGCGGTGATAGAGAGTGTTGTTGAGACGAAGAAGA 298
||||||| | ||||||||||||||||| ||||| ||||||| ||| ||||| |||||||
Sbjct 274 AGAAGCTCAGCGATCTGTTAAACTTAGCAGTGATTGAGAGTGGTGTAGAGACCAAGAAGA 333
Query 299 AGGAGGAAACACTTGAGATTCTAAAACGTGTTGTTAGAGATTTAC-A----A-GTGGAGG 352
|||||||||||||||||||||||||||||||||||| |||||||| | | | |||||
Sbjct 334 AGGAGGAAACACTTGAGATTCTAAAACGTGTTGTTAAAGATTTACAAGCGGAGGCGGAGG 393
Query 353 CGGA----GA--CGGCGGAGAAGAAAATAGCGGCGGCTAGTGAGGTTAGGTTGTTAGCAA 406
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CGGAGGCGGAGGCGGCGGAGAAGAAAATAGCGGCGGCTAGTGAGGTTAGGTTGTTAGCAA 453
Query 407 AAGATGATACGGAGGCGAGAGTGACACTTGCGATGCTCGGTGCGATTCCACCGTTGGTTA 466
||||||||| ||||||||||| |||||||||||||| |||||||| || ||||||||||
Sbjct 454 AAGATGATATAGAGGCGAGAGTAACACTTGCGATGCTTGGTGCGATCCCGCCGTTGGTTA 513
Query 467 GTATGAT---CGACGA--C-C--A-C---GATTCACAAATCGCTTCGCTTTACGCTCTTC 514
||||||| |||||| | | | | ||| | | |||||||||||||||||||||||
Sbjct 514 GTATGATCGACGACGAGTCACAAAGCGAAGATGCGCTAATCGCTTCGCTTTACGCTCTTC 573
Query 515 TCAATCTCGGAATCGGCAACGATGTGAACAAAGCAGCCATTGTTAAAGCAGAAGCTGTTC 574
|||| |||||||||||||| ||||||||||||||||||||||| ||||||| | |||||
Sbjct 574 TCAACCTCGGAATCGGCAATGATGTGAACAAAGCAGCCATTGTAAAAGCAGGTGTTGTTC 633
Query 575 ACAAAATGCTGAAGCTAATTGAGTCATCAAAGCCTCCAAATCAAGCGATTTCGGAGGCTA 634
|||||||| | |||||| ||||||||||||| ||||| |||||||| || |||||||||
Sbjct 634 ACAAAATGTTAAAGCTAGTTGAGTCATCAAAACCTCCTAATCAAGCAATCGCGGAGGCTA 693
Query 635 TTGTCGCGAATTTCCTAGGGCTAAGCGCATTAGATGCCAATAAACCGATCATCGGTTCCT 694
||||||| |||||||||||| ||||||| || ||| |||| |||||||||||||||||||
Sbjct 694 TTGTCGCTAATTTCCTAGGGTTAAGCGCGTTGGATTCCAACAAACCGATCATCGGTTCCT 753
Query 695 CGGGTGCAATTATCTTTCTAGTGAAAAC-TTTGAAAAACTTCGAGGAAACTAGCAGCTCA 753
|||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 754 CGGGTGCAATCATCTTTCTAGTGAAAACGCTT-AAAAACTTCGAGGAAACTAGCAGCTCA 812
Query 754 CAAGCTAGAGAAGACGCTCTTCGAGCTCTTTACAACCTTTCAATCA-ATCAACAAAACGT 812
|||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 813 CAAGCTAGAGAAGACGCTCTTCGAGCTCTTTACAACCTTTCAAT-ATATCACCAAAACGT 871
Query 813 TTTCTTCATCCTTGAAACAGATTTGATTCCATATCTCTTGAACACATTGGGAGACATGGA 872
|| |||||| || ||||| ||| ||||||| | |||||||||||| ||||||||||||||
Sbjct 872 TTCCTTCATACTCGAAACCGATCTGATTCCTTTTCTCTTGAACACGTTGGGAGACATGGA 931
Query 873 AGTAAGCGAGAGGATTCTCGCCATCTTAACCAATGTGGTATCCGTCCCTGAAGGACGGAA 932
||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||
Sbjct 932 AGTGAGCGAGAGGATTCTCGCCATCTTAACCAATGTAGTATCAGTCCCCGAAGGAAGGAA 991
Query 933 AGCGATAGGGG-GTGTGGTTGAAGCGCTTCCCATATTGGTAGATGTACTGAATTGGAATG 991
|||||| |||| | |||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct 992 AGCGATCGGGGAG-GTGGTTGAAGCGTTTCCCATATTGGTAGATGTATTGAACTGGAATG 1050
Query 992 ATTCGGTAAAATGTCAAGAGAAAGCGGTTTACATCCTTATGTTAATGGCTCATAAAGGGT 1051
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1051 ATTCAATAAAATGTCAAGAGAAAGCGGTTTACATCCTTATGTTAATGGCTCATAAAGGTT 1110
Query 1052 ATGGAGATCGGAAAGCAATGATCGAAGCGGGTATTGAATCTTCATTGCTTGAACTAATAC 1111
|||||||||| || || ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1111 ATGGAGATCGTAATGCGATGATTGAAGCGGGTATTGAATCTTCATTGCTTGAACTAACAC 1170
Query 1112 TTGTAGGAAGTCCATTGGCGCAAAAGCGAGCCTCAAGGGTACTAGAGTGTTTGAGAATTG 1171
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 1171 TTGTAGGAAGTCCATTGGCGCAAAAGCGAGCCTCGAGGGTACTAGAGTGTTTGAGAGTGG 1230
Query 1172 TGGACAAAGGGAAGCAAGTCTCAGCTCCGGTTTATGGAATATCTTCTTCTTCTTCATTGG 1231
|||| |||||||||||||||||||||||| |||| |||| ||||||| |||||
Sbjct 1231 TGGATAAAGGGAAGCAAGTCTCAGCTCCGATTTACGGAA---CTTCTTC------ATTGG 1281
Query 1232 GTAGAGAGAGAGGGCATGATCTAAGGATGA-GTGATGAGAGAAAAGCAGTGAAGCAGTTA 1290
| ||||||||||| |||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 1282 GAAGAGAGAGAGGTCATGATCTTAGGATGACG-GATGAGAGAAAAGCAGTGAAGCAGTTA 1340
Query 1291 GTGCAACAGAGTTTACAGAGCAACATGAAGAGGATTGTGAAGAGAGCTAATTTACCACAT 1350
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1341 GTGCAACAGAGTTTACAGAGTAACATGAAGAGGATTGTGAAGAGAGCTAATTTGCCACAT 1400
Query 1351 GACTTTGTTACTACTTCACAGCATTTCTCAAAGAGCTTAACTTTCTGA 1398
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 GACTTTGTTACTACTTCACAGCATTTCTCAAAGAGCTTAACTTTCTGA 1448
> AT4G31890.1 | Symbols: | ARM repeat superfamily protein | chr4:15426292-15429107
REVERSE LENGTH=2041
Length=2041
Score = 534 bits (289), Expect = 7e-151
Identities = 672/852 (79%), Gaps = 46/852 (5%)
Strand=Plus/Plus
Query 366 GAAGAAAATAGCGGCGGCTAGTGAGGTTA-GGTTGTTAGCAAAAGATGA-TACGGAGGCG 423
|||||||||| ||||||| ||||||| || ||||||| || || || || | ||||||||
Sbjct 532 GAAGAAAATAACGGCGGCGAGTGAGG-TACGGTTGTTGGCGAAGGAAGACT-CGGAGGCG 589
Query 424 AGAGTGACACTT-GCGATGCTCGGTGCGATTCCACCGTTGGTTAGTATGATCGACGAC-C 481
|||||||| || |||||||||||||||||||| ||||| |||||||||||||| ||| |
Sbjct 590 AGAGTGAC-GTTGGCGATGCTCGGTGCGATTCCGCCGTTAGTTAGTATGATCGATGACTC 648
Query 482 ----A-C---GATTCACAAATCGCTTCGCTTTACGCTCTTCTCAATCTCGGAATCGGCAA 533
| | ||| | || |||||||||||||| ||||| |||||||| || || || ||
Sbjct 649 GAGAATCGTAGATGCTCAGATCGCTTCGCTTTATGCTCTGCTCAATCTTGGGATTGGTAA 708
Query 534 CGATGTGAACAAAGCAGCCATTGTTAAAGCAGAAGCTGTTCACAAAATGCTGAAGCTAAT 593
|| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 709 TGACGCGAACAAAGCAGCGATTGTTAAAGCAGGTGCTGTTCACAAAATGCTGAAGCTAAT 768
Query 594 TGAGTCATC-AAAGC-CTCCAAATCAAGCGATTTCGGAGGCTATTGTCGCGAATTTCCTA 651
|||||| || ||| | |||| |||||| |||| | || ||| | ||||| ||||| ||
Sbjct 769 TGAGTC-TCCAAA-CACTCCTGATCAAGAGATTGCAGAAGCTGTGGTCGCTAATTTTCTT 826
Query 652 GGGCTAAGCGCATTAGATGCCAATAAACCGATCATCGGTTCCTCGGGTGCAATTATCTTT 711
|| ||||||| |||||| | || |||||||| || ||||| || || || || |||||
Sbjct 827 GGATTAAGCGCTTTAGATTCAAACAAACCGATTATTGGTTCTTCTGGAGCTATAATCTTC 886
Query 712 CTAGTGAAAACT-TTGAAAAACTTCGAGGAAACTAGCAGCTCACAAGCTAGAGAAGACGC 770
|| ||||||||| || | || || || ||||| || ||||||||||| ||||| |||||
Sbjct 887 CTGGTGAAAACTCTTCAGAAT-TTGGATGAAACAAGTAGCTCACAAGCGAGAGAGGACGC 945
Query 771 TCTTC-GAGCTCTTTACAACCTTTCAATCAATCAACAAAACGTTTTC-TTCATCCTTGAA 828
|| ||||||| |||||||| |||||| |||||| |||||||| | || |||||||||
Sbjct 946 A-TTGAGAGCTCTCTACAACCTCTCAATCTATCAACCAAACGTTT-CGTTTATCCTTGAA 1003
Query 829 ACAGATTTGATTC-CATATCTCTTGAACACATTGGGAGACATGGAAGTAAGCGAGAGGAT 887
|| |||||||| | | ||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 1004 ACCGATTTGAT-CACGTATCTTTTGAACACATTGGGAGATATGGAAGTGAGTGAGAGGAT 1062
Query 888 TCTCGCCATCTTAACCAATGTGGTATCCGTCCCTGAAGGACGGAAAGCGATAGGG--GGT 945
|||||| ||||| | |||| | || | |||||||||||| | ||||| || || |||
Sbjct 1063 TCTCGCTATCTTGAGCAATTTAGTGGCAGTCCCTGAAGGAAGAAAAGCAATCGGTTTGGT 1122
Query 946 GTGGTTGAAGCGCTTCCCA-TATTGGTAGATGTACTGAATTGGAATGATTCGGTAAAATG 1004
||| || || ||||| | || || ||||||||||| |||| ||| || ||
Sbjct 1123 GTGC--GACGCA-TTCCCGGTTTTAGTCGATGTACTGAACTGGACTGACTCACCGGGGTG 1179
Query 1005 TCAAGAGAAAG-CGGTTTACATCCTTATGTTAATGGCTCATAAAGGG-TATGGAGATCGG 1062
||||| |||| || |||||| || ||||| |||||||| || ||| || |||||| |
Sbjct 1180 CCAAGA-AAAGGCGACTTACATTCTAATGTTGATGGCTCACAA-GGGATACGGAGATAG- 1236
Query 1063 A-AAGCAATGATCGAAGCGGGTATTGAATCTTCATTGCTTGAACTAA-TACTTGTAGGAA 1120
| ||| ||||| || ||||| || ||||| | ||||| || ||| | ||| ||||||
Sbjct 1237 ACAAGTGATGATTGAGGCGGGAATCGAATCAGCGTTGCTCGAGTTAACT-CTTTTAGGAA 1295
Query 1121 GTCCATTGGCGCAAAAGCGAGCCTCAAGGGTACTAGAGTGT-TTGAGAATTGTGGACAAA 1179
|| || |||| |||||| |||| |||||| || |||||||| || ||| || ||||||
Sbjct 1296 GTGCACTGGCACAAAAGAGAGCATCAAGGATATTAGAGTGTCTT-AGA---GTAGACAAA 1351
Query 1180 GGGAAGCAAGTC 1191
|| |||||||||
Sbjct 1352 GGAAAGCAAGTC 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5