BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg344161

Length=1134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G25590.1 | Symbols:  | Plant Tudor-like protein | chr2:10890...   569    2e-161


> AT2G25590.1 | Symbols:  | Plant Tudor-like protein | chr2:10890903-10893772 
FORWARD LENGTH=1312
Length=1312

 Score =  569 bits (308),  Expect = 2e-161
 Identities = 373/404 (92%), Gaps = 5/404 (1%)
 Strand=Plus/Plus

Query  1    ATGAGATTCAGAAGAGGAAGTAGAGTTGAGGTGTTTAGCATCAAAGAGGCGACTTATGGT  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||
Sbjct  167  ATGAGATTCAGAAGAGGAAGTAGAGTTGAGGTGTTTAGCATCAAAGAAGCCTCTTATGGT  226

Query  61   GCGTGGCGATCAGCGGAGATTATATCGGGTAATGGTCACACTTACGGTGTTAGATATTAC  120
            | |||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||
Sbjct  227  GTGTGGCGATCAGCGGAGATTATATCTGGTAATGGTCACACTTACAATGTTAGATATTAC  286

Query  121  TCTTTCGAACTTGCTAACAATGAGGTAGTTGAGGAAAGAGTTCCAAGGAAGATAATTAGG  180
            ||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  287  TCTTTTGAAATTGCTAACAATGAGGTTGTTGAGGATAGAGTTCCAAGGAAGATAATTAGG  346

Query  181  CCGTGTCCTCCGCAAATAGATGTAGATAGATGGGAAGCTGGTGAATTAGTGGAGGTTCTT  240
            ||||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||
Sbjct  347  CCGTGTCCTCCGCAAGTAGATGTTGATAGATGGGAAGCTGGTGAATTGGTTGAGGTTCTT  406

Query  241  GATAATA-T-TT-CTTGGAAAACTGCTACGGTCTTGGAGGAGTTATCTGGAAGATATTAT  297
            ||||||| | || | |||||||||||||| |||||||||| |||||||||||||||||||
Sbjct  407  GATAATAATATTTCATGGAAAACTGCTACTGTCTTGGAGGTGTTATCTGGAAGATATTAT  466

Query  298  GTCGTTCGGTTACTTGGTGCCAAAGCGGAACTTACAGTTCACAAAGTTATTC-TCAGGGC  356
            || ||||||||||||||||| ||||| ||||| || |||||||||||| | | |||||||
Sbjct  467  GTTGTTCGGTTACTTGGTGCTAAAGCAGAACTCACGGTTCACAAAGTT-TACCTCAGGGC  525

Query  357  TCGACAATCTTGGCAGGATGAAAGATGGGTTATGATTGGAAAGG  400
            | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct  526  TAGACAATCTTGGCAAGATGAAAGATGGGTTATGATTGGAAAGG  569


 Score =  243 bits (131),  Expect = 4e-63
 Identities = 139/143 (97%), Gaps = 0/143 (0%)
 Strand=Plus/Plus

Query  485  AGGAGACTAGTGTTGCTTCTTTAAGAGTGTTGAAGAGACCTTCACCCTGTGATTCGGCGG  544
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct  567  AGGAGACTAGTGTTGCTTCTTTAAGAGTGTTGAAGAGACCTTCACCATGTGATTGGGCGG  626

Query  545  AGTCTGCTGAATCATGCACGAGAAGTCCTAAGAAGATACGATCATTGGAGGAAGAAGGAC  604
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  627  AGTCTGCTGAATCATGCACTAGAAGTCCTAAGAAGATACGATCATTGGAGGAAGAAGGAC  686

Query  605  ACCAGCACCGGTTTGCTTCGTCT  627
            ||||||||||||||||||| |||
Sbjct  687  ACCAGCACCGGTTTGCTTCTTCT  709


 Score =  147 bits (79),  Expect = 3e-34
 Identities = 85/88 (97%), Gaps = 0/88 (0%)
 Strand=Plus/Plus

Query  850  GGTGCCGACTCTTGTAGTAGTGATGCTGAATCTTCAAAAGAAGCATTTGGATGCAGAGAG  909
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct  817  GGTGCCGACTCTTGTAGTAGTGATGCTGAATCTTCAAAAGAAGCATCTGGATGCAGAGAT  876

Query  910  GAAGCTACGCGAAAACATTCATTATCAG  937
            ||||||| ||||||||||||||||||||
Sbjct  877  GAAGCTAGGCGAAAACATTCATTATCAG  904



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55622203860


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5