BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344261
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19990.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 433 2e-120
AT1G06530.1 | Symbols: | Tropomyosin-related | chr1:2001594-20... 388 5e-107
AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE prot... 333 2e-90
AT2G40180.1 | Symbols: ATHPP2C5, PP2C5 | phosphatase 2C5 | chr2... 126 4e-28
> AT3G19990.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast stroma, chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING:
13 growth stages; Has 118 Blast hits to 118 proteins in 41
species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0;
Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI
BLink). | chr3:6965647-6967248 FORWARD LENGTH=1448
Length=1448
Score = 433 bits (234), Expect = 2e-120
Identities = 298/327 (91%), Gaps = 12/327 (4%)
Strand=Plus/Plus
Query 358 aagaagaTTAATGGTTTGGTTCCTGATAATGGTGTTGTTGTGAAACATATCAAGACAGGT 417
||||||||||||| |||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 526 AAGAAGATTAATGCTTTGGTTCCTGAGAACGGTGTTGTTGTGAAGCATATCAAGACAGGT 585
Query 418 GAAGAAATCGTTGTTTCGAGGAGAGTTGTTGGTGTTTTCCTGCTAATGACAATGGCGGAG 477
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 586 GAAGAAATCGTTGTTTCGAGGAGAGTTGTTGGTGTTTTCTTGTTAATGACAATGGCGGAT 645
Query 478 TTTAGTGATCAGTTTTTTGGGCTCCAAGATGAGTT-TT-T-CAACT-ATGGCT-GGAGAC 532
|||||||||||| |||||||| ||||||||||||| || | || | || | | ||||||
Sbjct 646 TTTAGTGATCAGCTTTTTGGGTTCCAAGATGAGTTGTTCTGTAA-TCAT-GATGGGAGAC 703
Query 533 TTGAGTTTAGAGGGAACAACGTGACTGCGTTGTGGCCTAGGAATGGGAAACCTGGACTGT 592
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 704 TTGAGTTTAGAGGGAACAACGTGACTGCGTTGTGGCCTGGGAATGGGAAGCCTGGACTGT 763
Query 593 GGTTGAATTCGAATTCAAGGATGGGAGCGATTTATAGTTTGATTGTGAGAGAAGAGGAGA 652
|| ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GGATGAATTCTAATTCGAGAATGGGAGCGATTTATAGTTTGATTGTGAGAGAAGAGGAGA 823
Query 653 TTTTGATAGAGAATGA-AG-AGAAGGG 677
||||||| | ||| || || |||||||
Sbjct 824 TTTTGAT-G-GAA-GAGAGGAGAAGGG 847
> AT1G06530.1 | Symbols: | Tropomyosin-related | chr1:2001594-2002596
FORWARD LENGTH=1003
Length=1003
Score = 388 bits (210), Expect = 5e-107
Identities = 312/357 (87%), Gaps = 23/357 (6%)
Strand=Plus/Plus
Query 1 ATGGGTGAGACGAAGCGAGAGACTGACAAGTCCGATGAGGAGAGGAAGGTTCTTGAAGCC 60
|||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 269 ATGGGTGAGATGGAGCGAGAGATTGACAAGTCCGATGAGGAGAGGAAGGTTCTTGAAGCC 328
Query 61 ATAGCTTCGAGAGCTTCGGAGTTAGAGACTAAAGTTGCACGGTTGCAGCATGAACTGAT- 119
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 329 ATAGCTTCTAGAGCTTCGGAGTTAGAGACCGAAGTTGCACGGCTGCAGCATGAACTGATC 388
Query 120 ----------C---------A-AGGCTACGACGGAGGCAAAGAAGCTCAATTCTGAGTTT 159
| | |||||||| ||||||| ||||||| | |||||| ||
Sbjct 389 ACGGCCAGGACGGAAGGGGAAGAGGCTACGGCGGAGGCGGAGAAGCTGAGGTCTGAGATT 448
Query 160 TCACAGAAAGGTGATGGAATTGAGGAATTGGAGAAAGAGGTCGCTGGTTTAAGGACTGTT 219
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 TCACAGAAAGGTGGTGGAATTGAGGAATTGGAGAAAGAGGTCGCTGGTTTAAGGACTGTC 508
Query 220 AAGGAGGAGAATGAGAAGAGAATGAAGGAATTGGAGACAAAGCTTGGTGCTTTGGAGGTG 279
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 509 AAGGAGGAGAATGAGAAGAGAATGAAGGAATTGGAGTCAAAGCTTGGTGCTTTGGAGGTG 568
Query 280 AAGGAGTTAGaggagaagaacgaaaggttccaagcagaggaagtagatgagg-agaa 335
||||||||||| ||||||||| ||| ||||| |||||||||| |||||||| ||||
Sbjct 569 AAGGAGTTAGATGAGAAGAACAAAAAGTTCCGTGCAGAGGAAG-AGATGAGGGAGAA 624
> AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE protein-protein
interaction domain protein family | chr1:11612118-11616218
FORWARD LENGTH=2582
Length=2582
Score = 333 bits (180), Expect = 2e-90
Identities = 222/242 (92%), Gaps = 3/242 (1%)
Strand=Plus/Plus
Query 817 TGTGATGGTGACAAAAACGGAGTTCGTTACATGGTTTTATGTCATGTAATAATGGGGAAT 876
||||||| |||| |||||||||| ||||||||||||||||| | ||| || |||||||||
Sbjct 1623 TGTGATGTTGACGAAAACGGAGTACGTTACATGGTTTTATGCCGTGTGATTATGGGGAAT 1682
Query 877 ATGGAGCTTCTTCGTGGTGATAAAGCTCAATTCTTTTATGGTGGAGAAGAATATGACAAT 936
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1683 ATGGAGCTTCTTCGTGGTGATAAAGCTCAGTTCTTTTCTGGTGGAGAAGAATATGACAAT 1742
Query 937 GGAGTAGTCGATGATATCGAGAGTCCAAAGAATTACATTGTCTGGAACATCAATATGAAC 996
| | ||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 -G-G-AGTCGATGACATTGAGAGTCCAAAGAATTACATTGTCTGGAACATCAATATGAAC 1799
Query 997 ACTCATATATTCCCCGAATTTGTTTTTAGGTTCAAGCTGTCTAATCTCTCCAATACTGGA 1056
|| ||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||| |
Sbjct 1800 ACACATATATTCCCGGAATTTGTTGTTAGGTTCAAGCTGTCTAATCTCCCCAATGCTGAA 1859
Query 1057 GG 1058
||
Sbjct 1860 GG 1861
> AT2G40180.1 | Symbols: ATHPP2C5, PP2C5 | phosphatase 2C5 | chr2:16782522-16784147
FORWARD LENGTH=1306
Length=1306
Score = 126 bits (68), Expect = 4e-28
Identities = 72/74 (97%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 1058 GCAGAAAGTGTCATTGGATTCTCTACGCCTACGCAGTACGGTCGAACCACATCGACCGCC 1117
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1082 GCAGAAAGTGTCATTGGATTCTCTACGCCTACGCAGTACGGTCGAACGACATCGACGGCC 1023
Query 1118 TCTTGGTTCGTTAC 1131
||||||||||||||
Sbjct 1022 TCTTGGTTCGTTAC 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5